FFCP PHASE1:Mm9::chr18:61336648..61336711,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=106894 | |EntrezGene=106894 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=E9Q9W3,G3X9M3,Q6NZP6,Q8BY57,Q8R168,Q9JJ64,Q6AXF8,Q6PEF4,Q8BZN3 | |UniProt=E9Q9W3,G3X9M3,Q6NZP6,Q8BY57,Q8R168,Q9JJ64,Q6AXF8,Q6PEF4,Q8BZN3 | ||
|association_with_transcript=0bp_to_ENSMUST00000025524,ENSMUST00000091884,NM_134134,NM_178277,uc008fbq.1,uc008fbr.1,uc008fbs.1,uc008fbt.1,uc012bdp.1_5end | |association_with_transcript=0bp_to_ENSMUST00000025524,ENSMUST00000091884,NM_134134,NM_178277,uc008fbq.1,uc008fbr.1,uc008fbs.1,uc008fbt.1,uc012bdp.1_5end | ||
|cluster_id=chr18:61336648..61336711,- | |||
|description=CAGE_peak_1_at_Hmgxb3_5end | |description=CAGE_peak_1_at_Hmgxb3_5end | ||
|id=chr18:61336648..61336711,- | |id=chr18:61336648..61336711,- | ||
|ontology_enrichment_celltype=CL:0000540!1.72e-08!33;CL:0000047!1.72e-08!33;CL:0000031!1.72e-08!33;CL:0000404!1.72e-08!33;CL:0002319!1.08e-07!43;CL:0000221!1.98e-07!44;CL:0000133!1.98e-07!44 | |ontology_enrichment_celltype=CL:0000540!1.72e-08!33;CL:0000047!1.72e-08!33;CL:0000031!1.72e-08!33;CL:0000404!1.72e-08!33;CL:0002319!1.08e-07!43;CL:0000221!1.98e-07!44;CL:0000133!1.98e-07!44 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.72e-08,33;CL:0000047,1.72e-08,33;CL:0000031,1.72e-08,33;CL:0000404,1.72e-08,33;CL:0002319,1.08e-07,43;CL:0000221,1.98e-07,44;CL:0000133,1.98e-07,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.54e-17!75;UBERON:0001016!2.54e-17!75;UBERON:0001017!2.90e-17!73;UBERON:0005743!2.90e-17!73;UBERON:0004121!2.17e-15!102;UBERON:0000924!2.17e-15!102;UBERON:0006601!2.17e-15!102;UBERON:0000153!5.39e-14!94;UBERON:0007811!7.00e-14!86;UBERON:0000955!3.18e-13!50;UBERON:0006238!3.18e-13!50;UBERON:0001049!5.54e-13!52;UBERON:0005068!5.54e-13!52;UBERON:0006241!5.54e-13!52;UBERON:0007135!5.54e-13!52;UBERON:0002616!9.13e-13!49;UBERON:0002346!6.27e-12!71;UBERON:0003075!6.27e-12!71;UBERON:0007284!6.27e-12!71;UBERON:0003080!7.18e-12!40;UBERON:0002780!7.42e-12!39;UBERON:0001890!7.42e-12!39;UBERON:0006240!7.42e-12!39;UBERON:0002020!1.87e-11!34;UBERON:0000033!3.64e-11!63;UBERON:0003056!5.23e-11!49;UBERON:0002791!1.05e-10!29;UBERON:0003528!1.05e-10!29;UBERON:0001893!1.05e-10!29;UBERON:0000956!2.03e-08!21;UBERON:0001869!2.03e-08!21;UBERON:0000203!2.03e-08!21;UBERON:0002619!5.79e-07!17 | |ontology_enrichment_uberon=UBERON:0000073!2.54e-17!75;UBERON:0001016!2.54e-17!75;UBERON:0001017!2.90e-17!73;UBERON:0005743!2.90e-17!73;UBERON:0004121!2.17e-15!102;UBERON:0000924!2.17e-15!102;UBERON:0006601!2.17e-15!102;UBERON:0000153!5.39e-14!94;UBERON:0007811!7.00e-14!86;UBERON:0000955!3.18e-13!50;UBERON:0006238!3.18e-13!50;UBERON:0001049!5.54e-13!52;UBERON:0005068!5.54e-13!52;UBERON:0006241!5.54e-13!52;UBERON:0007135!5.54e-13!52;UBERON:0002616!9.13e-13!49;UBERON:0002346!6.27e-12!71;UBERON:0003075!6.27e-12!71;UBERON:0007284!6.27e-12!71;UBERON:0003080!7.18e-12!40;UBERON:0002780!7.42e-12!39;UBERON:0001890!7.42e-12!39;UBERON:0006240!7.42e-12!39;UBERON:0002020!1.87e-11!34;UBERON:0000033!3.64e-11!63;UBERON:0003056!5.23e-11!49;UBERON:0002791!1.05e-10!29;UBERON:0003528!1.05e-10!29;UBERON:0001893!1.05e-10!29;UBERON:0000956!2.03e-08!21;UBERON:0001869!2.03e-08!21;UBERON:0000203!2.03e-08!21;UBERON:0002619!5.79e-07!17 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.54e-17,75;UBERON:0001017,2.90e-17,73;UBERON:0004121,7.73e-16,95;UBERON:0000924,7.73e-16,95;UBERON:0006601,7.73e-16,95;UBERON:0000073,1.08e-13,54;UBERON:0001049,5.54e-13,52;UBERON:0005068,5.54e-13,52;UBERON:0006241,5.54e-13,52;UBERON:0007135,5.54e-13,52;UBERON:0002346,1.37e-12,64;UBERON:0003075,1.37e-12,64;UBERON:0007284,1.37e-12,64;UBERON:0000955,2.91e-12,47;UBERON:0006238,2.91e-12,47;UBERON:0003080,7.18e-12,40;UBERON:0002780,7.42e-12,39;UBERON:0001890,7.42e-12,39;UBERON:0006240,7.42e-12,39;UBERON:0002616,8.23e-12,46;UBERON:0010371,1.76e-11,73;UBERON:0002020,1.87e-11,34;UBERON:0003056,5.23e-11,49;UBERON:0003528,1.05e-10,29;UBERON:0002791,1.05e-10,29;UBERON:0001893,1.05e-10,29;UBERON:0010314,6.81e-10,92;UBERON:0000956,2.03e-08,21;UBERON:0001869,2.03e-08,21;UBERON:0000203,2.03e-08,21;UBERON:0002619,5.79e-07,17 | |||
|phase1_expression=15.0539916278506,13.9590163055744,10.9199817453489,7.25914107136392,9.5170188689806,12.0873075776561,11.2134067485852,22.2092116319511,71.6614595751984,84.0291649495957,42.2908381516997,42.8376493804956,21.4000912414007,27.4500063595652,14.3237197580735,13.970793449898,10.4934281719222,21.293696161681,22.7609959785526,16.5511964201232,18.1992640923289,13.6028603145213,11.2315909329742,8.95957567643077,8.48814339948529,9.76194338995534,12.9228598847722,8.40337807474967,8.7410772949932,10.0812051903972,14.4124831925948,65.408159366342,51.0503773695193,47.5445043046316,12.1317680295535,9.97407872150954,11.0251452381679,6.69650609179052,5.4693474116666,2.61761871986899,9.41170380849623,3.41522742479223,5.82612423637384,10.5753327099485,10.8473316404881,11.1963518818626,11.7358701652206,21.3664653252838,13.8402295122717,20.8039992009483,13.9986421625363,12.9377307928474,18.1205214542355,23.9369506863744,26.2153163331122,12.6057123657614,17.1920063963254,17.0171790451556,24.6826082248709,19.5726662330652,19.0149421051854,19.3141383279405,16.0073063300005,22.497492932035,21.7550599764734,18.4724829885986,23.0692085099172,23.0530983192933,21.9821978093973,22.5459917013923,20.4015212510841,18.2816630018434,21.2033799313549,20.0884910712525,18.2106394934649,29.4150011715207,24.2254938198655,20.9407234459708,19.6616362567992,24.5308495178161,21.3166209593614,20.8365348222704,18.7052609330925,19.6966913511088,19.8637722109853,18.8562294703147,17.7964600998879,24.2319279572891,20.2946198132933,16.0967423027453,15.6526823898906,7.74381489283248,22.4390540123558,7.01614149129162,10.3964226791627,12.5447528387254,12.4995533917259,14.3161470965569,9.35229616570328,16.9602995764963,15.2110893358815,6.41632387071589,7.64415719119937,21.3320010945999,20.9996309780878,19.0019899106324,13.6491600153991,13.245330047411,20.4560928081266,16.0317510190011,16.654591369549,17.354532263792,21.9084722393256,13.565037649736,17.1679512418129,15.3313241422204,23.7307169024999,12.5801440520323,19.4614321428972,14.0737159454246,14.1338571814652,13.5765070877862,18.6391761218122,17.2740670236813,26.3902850584953,14.5610521468897,13.4192939446631,8.99854096490112,9.14905634926066,18.2744580073884,29.7375391832107,21.7382029155255,26.7689453096106,26.338692105024,17.6619837875626,20.766881672673,14.0538322113436,14.8044295026011,15.6688110228878,16.6249066150314,17.1758984710769,19.3117767724117,15.48534316326,15.2211866014072,17.009124787832,22.2917873295639,18.9277483610652,14.7460921321239,18.3232793992916,18.7215019366141,15.3077478022636,13.8093311429372,21.409638190371,22.2881386574187,13.1700567301084,18.1121182804829,12.6398373716382,10.0365683774739,10.7982129770325,15.5344329401626,17.12040237862,13.1445304866541,16.0986420197943,19.0861304794982,14.6553757243009,18.6027155800326,21.9984189147688,14.8291984806305,19.7471819896177,15.9242440156722,16.3758995282629,16.5205985790626,16.4662586468288,14.7627060636409,22.9216043934899,22.6390147234426,10.2429822724977,17.1892868331304,16.8497717922835,15.7920936865098,17.1393723558384,16.1346819698674,18.0126215514345,21.3052701246066,16.6085171540579,15.811099653505,22.8715040008245,11.3405189063456,15.9870551437679,15.2799299471218,12.752144942607,9.55878111620963,14.9837641752935,15.3093006897037,15.7790829942313,14.6628956048626,12.9948166402309,17.7443624322506,15.9988438924371,14.1705742060418,12.55989822731,11.9695249004147,12.4510103376603,15.3497497258807,19.4593405162071,16.864658428864,10.9544465549792,13.2647437863829,11.4581633301639,16.3986798346962,15.8892522239535,10.158772287959,14.3768206527355,10.0478055870496,13.7296576170407,11.36604950762,10.225652570749,9.64887042726734,19.0295785871603,17.2437184711141,11.8964432802679,19.1811946925963,17.6017686216377,16.0806007144143,19.5195785526531,20.4890330250689,18.7585821486367,15.2810635857655,21.0480294627883,13.9283817508377,15.0235934223329,16.2006945611293,37.6978209848181,9.24639662491806,19.1788066477424,19.0396354950265,16.8578119487182,18.7538698547525,9.18035694109382,14.3908428506493,18.9304931649754,17.9601822376454,18.5264122050207,20.3123478259669,20.0518806674155,21.7968928707401,27.1223170122179,23.0882127749936,24.1125544547379,23.4564560987919,15.8972895433261,14.6013795007149,15.6371480979433,17.3218629121162,17.2568679841952,16.2663026223838,13.302236506449,11.3163047853539,12.1073776081117,16.6014979889721,22.7416897988035,14.1778154496227,12.1209108650805,12.9575070753685,17.9211634577498,16.5016869197099,24.1712120085189,14.7650097105674,16.6872702079753,19.7190072229065,19.1527452333655,20.334045206636,20.0749805134588,24.3571959291679,18.0697215209057,29.0209937083434,14.9959310677374,14.8397627647332,12.2712964288888,16.4051155804584,17.1896175364517,19.2044852701722,18.6547735443104,20.5822085231666,17.2579589605831,18.1620443807636,18.3342582096015,11.4904758772862,15.7198361879179,16.7008066440762,13.7682528295023,11.3360676382163,12.1615976947893,10.5013767981662,16.2913036694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|phase1_expression=15.0539916278506,13.9590163055744,10.9199817453489,7.25914107136392,9.5170188689806,12.0873075776561,11.2134067485852,22.2092116319511,71.6614595751984,84.0291649495957,42.2908381516997,42.8376493804956,21.4000912414007,27.4500063595652,14.3237197580735,13.970793449898,10.4934281719222,21.293696161681,22.7609959785526,16.5511964201232,18.1992640923289,13.6028603145213,11.2315909329742,8.95957567643077,8.48814339948529,9.76194338995534,12.9228598847722,8.40337807474967,8.7410772949932,10.0812051903972,14.4124831925948,65.408159366342,51.0503773695193,47.5445043046316,12.1317680295535,9.97407872150954,11.0251452381679,6.69650609179052,5.4693474116666,2.61761871986899,9.41170380849623,3.41522742479223,5.82612423637384,10.5753327099485,10.8473316404881,11.1963518818626,11.7358701652206,21.3664653252838,13.8402295122717,20.8039992009483,13.9986421625363,12.9377307928474,18.1205214542355,23.9369506863744,26.2153163331122,12.6057123657614,17.1920063963254,17.0171790451556,24.6826082248709,19.5726662330652,19.0149421051854,19.3141383279405,16.0073063300005,22.497492932035,21.7550599764734,18.4724829885986,23.0692085099172,23.0530983192933,21.9821978093973,22.5459917013923,20.4015212510841,18.2816630018434,21.2033799313549,20.0884910712525,18.2106394934649,29.4150011715207,24.2254938198655,20.9407234459708,19.6616362567992,24.5308495178161,21.3166209593614,20.8365348222704,18.7052609330925,19.6966913511088,19.8637722109853,18.8562294703147,17.7964600998879,24.2319279572891,20.2946198132933,16.0967423027453,15.6526823898906,7.74381489283248,22.4390540123558,7.01614149129162,10.3964226791627,12.5447528387254,12.4995533917259,14.3161470965569,9.35229616570328,16.9602995764963,15.2110893358815,6.41632387071589,7.64415719119937,21.3320010945999,20.9996309780878,19.0019899106324,13.6491600153991,13.245330047411,20.4560928081266,16.0317510190011,16.654591369549,17.354532263792,21.9084722393256,13.565037649736,17.1679512418129,15.3313241422204,23.7307169024999,12.5801440520323,19.4614321428972,14.0737159454246,14.1338571814652,13.5765070877862,18.6391761218122,17.2740670236813,26.3902850584953,14.5610521468897,13.4192939446631,8.99854096490112,9.14905634926066,18.2744580073884,29.7375391832107,21.7382029155255,26.7689453096106,26.338692105024,17.6619837875626,20.766881672673,14.0538322113436,14.8044295026011,15.6688110228878,16.6249066150314,17.1758984710769,19.3117767724117,15.48534316326,15.2211866014072,17.009124787832,22.2917873295639,18.9277483610652,14.7460921321239,18.3232793992916,18.7215019366141,15.3077478022636,13.8093311429372,21.409638190371,22.2881386574187,13.1700567301084,18.1121182804829,12.6398373716382,10.0365683774739,10.7982129770325,15.5344329401626,17.12040237862,13.1445304866541,16.0986420197943,19.0861304794982,14.6553757243009,18.6027155800326,21.9984189147688,14.8291984806305,19.7471819896177,15.9242440156722,16.3758995282629,16.5205985790626,16.4662586468288,14.7627060636409,22.9216043934899,22.6390147234426,10.2429822724977,17.1892868331304,16.8497717922835,15.7920936865098,17.1393723558384,16.1346819698674,18.0126215514345,21.3052701246066,16.6085171540579,15.811099653505,22.8715040008245,11.3405189063456,15.9870551437679,15.2799299471218,12.752144942607,9.55878111620963,14.9837641752935,15.3093006897037,15.7790829942313,14.6628956048626,12.9948166402309,17.7443624322506,15.9988438924371,14.1705742060418,12.55989822731,11.9695249004147,12.4510103376603,15.3497497258807,19.4593405162071,16.864658428864,10.9544465549792,13.2647437863829,11.4581633301639,16.3986798346962,15.8892522239535,10.158772287959,14.3768206527355,10.0478055870496,13.7296576170407,11.36604950762,10.225652570749,9.64887042726734,19.0295785871603,17.2437184711141,11.8964432802679,19.1811946925963,17.6017686216377,16.0806007144143,19.5195785526531,20.4890330250689,18.7585821486367,15.2810635857655,21.0480294627883,13.9283817508377,15.0235934223329,16.2006945611293,37.6978209848181,9.24639662491806,19.1788066477424,19.0396354950265,16.8578119487182,18.7538698547525,9.18035694109382,14.3908428506493,18.9304931649754,17.9601822376454,18.5264122050207,20.3123478259669,20.0518806674155,21.7968928707401,27.1223170122179,23.0882127749936,24.1125544547379,23.4564560987919,15.8972895433261,14.6013795007149,15.6371480979433,17.3218629121162,17.2568679841952,16.2663026223838,13.302236506449,11.3163047853539,12.1073776081117,16.6014979889721,22.7416897988035,14.1778154496227,12.1209108650805,12.9575070753685,17.9211634577498,16.5016869197099,24.1712120085189,14.7650097105674,16.6872702079753,19.7190072229065,19.1527452333655,20.334045206636,20.0749805134588,24.3571959291679,18.0697215209057,29.0209937083434,14.9959310677374,14.8397627647332,12.2712964288888,16.4051155804584,17.1896175364517,19.2044852701722,18.6547735443104,20.5822085231666,17.2579589605831,18.1620443807636,18.3342582096015,11.4904758772862,15.7198361879179,16.7008066440762,13.7682528295023,11.3360676382163,12.1615976947893,10.5013767981662,16.2913036694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| ||
|short_description=p1@Hmgxb3 | |short_description=p1@Hmgxb3 | ||
}} | }} |
Latest revision as of 14:02, 1 October 2015
Short description: | p1@Hmgxb3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Hmgxb3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000025524, ENSMUST00000091884, NM_134134, NM_178277, uc008fbq.1, uc008fbr.1, uc008fbs.1, uc008fbt.1, uc012bdp.1_5end |
EntrezGene: | Hmgxb3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.72e-08 | 33 |
neuronal stem cell | 1.72e-08 | 33 |
neuroblast | 1.72e-08 | 33 |
electrically signaling cell | 1.72e-08 | 33 |
neural cell | 1.08e-07 | 43 |
ectodermal cell | 1.98e-07 | 44 |
neurectodermal cell | 1.98e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.54e-17 | 75 |
central nervous system | 2.90e-17 | 73 |
ectoderm-derived structure | 7.73e-16 | 95 |
ectoderm | 7.73e-16 | 95 |
presumptive ectoderm | 7.73e-16 | 95 |
regional part of nervous system | 1.08e-13 | 54 |
neural tube | 5.54e-13 | 52 |
neural rod | 5.54e-13 | 52 |
future spinal cord | 5.54e-13 | 52 |
neural keel | 5.54e-13 | 52 |
neurectoderm | 1.37e-12 | 64 |
neural plate | 1.37e-12 | 64 |
presumptive neural plate | 1.37e-12 | 64 |
brain | 2.91e-12 | 47 |
future brain | 2.91e-12 | 47 |
anterior neural tube | 7.18e-12 | 40 |
regional part of forebrain | 7.42e-12 | 39 |
forebrain | 7.42e-12 | 39 |
future forebrain | 7.42e-12 | 39 |
regional part of brain | 8.23e-12 | 46 |
ecto-epithelium | 1.76e-11 | 73 |
gray matter | 1.87e-11 | 34 |
pre-chordal neural plate | 5.23e-11 | 49 |
brain grey matter | 1.05e-10 | 29 |
regional part of telencephalon | 1.05e-10 | 29 |
telencephalon | 1.05e-10 | 29 |
structure with developmental contribution from neural crest | 6.81e-10 | 92 |
cerebral cortex | 2.03e-08 | 21 |
cerebral hemisphere | 2.03e-08 | 21 |
pallium | 2.03e-08 | 21 |
regional part of cerebral cortex | 5.79e-07 | 17 |