FFCP PHASE1:Mm9::chr13:51196572..51196600,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20729 | |EntrezGene=20729 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-316bp_to_uc007qlz.1_5end | |association_with_transcript=-316bp_to_uc007qlz.1_5end | ||
|cluster_id=chr13:51196572..51196600,+ | |||
|description=CAGE_peak_2_at_Spin1_5end | |description=CAGE_peak_2_at_Spin1_5end | ||
|id=chr13:51196572..51196600,+ | |id=chr13:51196572..51196600,+ | ||
|ontology_enrichment_celltype=CL:0000540!9.47e-12!33;CL:0000047!9.47e-12!33;CL:0000031!9.47e-12!33;CL:0000404!9.47e-12!33;CL:0000393!5.32e-10!39;CL:0000211!5.32e-10!39;CL:0000221!3.00e-09!44;CL:0000133!3.00e-09!44;CL:0000117!3.81e-09!23;CL:0000337!3.81e-09!23;CL:0002319!6.86e-09!43;CL:0000055!1.26e-07!50 | |ontology_enrichment_celltype=CL:0000540!9.47e-12!33;CL:0000047!9.47e-12!33;CL:0000031!9.47e-12!33;CL:0000404!9.47e-12!33;CL:0000393!5.32e-10!39;CL:0000211!5.32e-10!39;CL:0000221!3.00e-09!44;CL:0000133!3.00e-09!44;CL:0000117!3.81e-09!23;CL:0000337!3.81e-09!23;CL:0002319!6.86e-09!43;CL:0000055!1.26e-07!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.33e-13,33;CL:0000047,4.33e-13,33;CL:0000031,4.33e-13,33;CL:0000404,4.33e-13,33;CL:0000393,6.08e-11,39;CL:0000211,6.08e-11,39;CL:0000117,1.91e-10,23;CL:0000337,1.91e-10,23;CL:0000221,1.84e-09,44;CL:0000133,1.84e-09,44;CL:0002319,4.55e-09,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.78e-24!73;UBERON:0005743!9.78e-24!73;UBERON:0000073!3.69e-22!75;UBERON:0001016!3.69e-22!75;UBERON:0002346!1.08e-20!71;UBERON:0003075!1.08e-20!71;UBERON:0007284!1.08e-20!71;UBERON:0001049!1.29e-19!52;UBERON:0005068!1.29e-19!52;UBERON:0006241!1.29e-19!52;UBERON:0007135!1.29e-19!52;UBERON:0004121!1.30e-19!102;UBERON:0000924!1.30e-19!102;UBERON:0006601!1.30e-19!102;UBERON:0003056!5.77e-18!49;UBERON:0003080!2.01e-17!40;UBERON:0000033!3.19e-17!63;UBERON:0002780!3.48e-17!39;UBERON:0001890!3.48e-17!39;UBERON:0006240!3.48e-17!39;UBERON:0000955!1.08e-16!50;UBERON:0006238!1.08e-16!50;UBERON:0002020!2.19e-16!34;UBERON:0002616!4.53e-16!49;UBERON:0002791!5.65e-14!29;UBERON:0003528!5.65e-14!29;UBERON:0001893!5.65e-14!29;UBERON:0000153!1.15e-13!94;UBERON:0007811!2.72e-12!86;UBERON:0000956!4.48e-10!21;UBERON:0001869!4.48e-10!21;UBERON:0000203!4.48e-10!21;UBERON:0002619!5.18e-08!17;UBERON:0002021!5.58e-07!10;UBERON:0000411!5.58e-07!10;UBERON:0001950!5.58e-07!10 | |ontology_enrichment_uberon=UBERON:0001017!9.78e-24!73;UBERON:0005743!9.78e-24!73;UBERON:0000073!3.69e-22!75;UBERON:0001016!3.69e-22!75;UBERON:0002346!1.08e-20!71;UBERON:0003075!1.08e-20!71;UBERON:0007284!1.08e-20!71;UBERON:0001049!1.29e-19!52;UBERON:0005068!1.29e-19!52;UBERON:0006241!1.29e-19!52;UBERON:0007135!1.29e-19!52;UBERON:0004121!1.30e-19!102;UBERON:0000924!1.30e-19!102;UBERON:0006601!1.30e-19!102;UBERON:0003056!5.77e-18!49;UBERON:0003080!2.01e-17!40;UBERON:0000033!3.19e-17!63;UBERON:0002780!3.48e-17!39;UBERON:0001890!3.48e-17!39;UBERON:0006240!3.48e-17!39;UBERON:0000955!1.08e-16!50;UBERON:0006238!1.08e-16!50;UBERON:0002020!2.19e-16!34;UBERON:0002616!4.53e-16!49;UBERON:0002791!5.65e-14!29;UBERON:0003528!5.65e-14!29;UBERON:0001893!5.65e-14!29;UBERON:0000153!1.15e-13!94;UBERON:0007811!2.72e-12!86;UBERON:0000956!4.48e-10!21;UBERON:0001869!4.48e-10!21;UBERON:0000203!4.48e-10!21;UBERON:0002619!5.18e-08!17;UBERON:0002021!5.58e-07!10;UBERON:0000411!5.58e-07!10;UBERON:0001950!5.58e-07!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.69e-25,73;UBERON:0002346,2.68e-24,64;UBERON:0003075,2.68e-24,64;UBERON:0007284,2.68e-24,64;UBERON:0001016,9.83e-24,75;UBERON:0010371,5.28e-22,73;UBERON:0004121,2.03e-21,95;UBERON:0000924,2.03e-21,95;UBERON:0006601,2.03e-21,95;UBERON:0001049,2.54e-21,52;UBERON:0005068,2.54e-21,52;UBERON:0006241,2.54e-21,52;UBERON:0007135,2.54e-21,52;UBERON:0000073,1.54e-20,54;UBERON:0003056,7.74e-20,49;UBERON:0003080,8.44e-19,40;UBERON:0000955,9.39e-19,47;UBERON:0006238,9.39e-19,47;UBERON:0002780,1.56e-18,39;UBERON:0001890,1.56e-18,39;UBERON:0006240,1.56e-18,39;UBERON:0002616,4.76e-18,46;UBERON:0002020,1.28e-17,34;UBERON:0010314,3.34e-15,92;UBERON:0003528,6.36e-15,29;UBERON:0002791,6.36e-15,29;UBERON:0001893,6.36e-15,29;UBERON:0000956,1.41e-10,21;UBERON:0001869,1.41e-10,21;UBERON:0000203,1.41e-10,21;UBERON:0002619,2.76e-08,17;UBERON:0002021,1.23e-07,10;UBERON:0000411,1.23e-07,10;UBERON:0001950,1.23e-07,10 | |||
|phase1_expression=2.5623815536767,0.348975407639361,0,0,0.500895729946347,0.503637815735669,0.467225281191051,1.67860320474049,1.267098499365,0.936258105287974,1.02730780935303,0.797721589953364,0.856003649656029,1.57356724354195,0,0.202475267389826,0,1.73504190947031,1.7824876368746,0.84877930359606,1.9559956734746,0.595745707205312,1.30599894569468,0,1.14704640533585,0.57423196411502,0.430761996159075,0.861884930743556,0.190023419456374,0.504060259519861,0,1.90509202037889,0.61506478758457,15.8481681015439,0.866554859253824,0.997407872150954,0.408338712524738,0.418531630736908,0,0.523523743973798,0.588231488031014,0.683045484958446,0,1.25896817975577,1.31790010585369,1.28482726513177,1.56478268869608,1.09012578190223,0.659058548203415,0.777719596297134,0.839918529752175,2.87505128729943,1.17447824240415,1.45072428402269,1.68046899571232,1.02903774414379,0.573066879877513,0.515672092277442,1.82084814773638,3.70293685490423,3.80298842103708,0.677689064138264,0.889294796111139,0,0,0,0.898800331555214,1.15265491596466,3.83651565541367,3.64516033495565,2.73422449756797,1.71390590642282,4.19650227808066,6.00204916153275,4.79227355091182,1.83843757322004,0,1.78762273319263,2.4577045320999,4.2203612073662,3.65950574409639,3.12548022334056,1.95428099300967,2.8138130501584,2.75036845998258,3.53554302568401,4.41352210477219,6.71038004971082,0.37863096666592,0.302286240427142,0,0.860423876981386,2.03991400112325,0,0,0,0.280888840263504,0,0,0,2.67602497575693,0,2.54805239706646,0,1.73192832808971,0.506719730950197,1.01104889002957,0.11418387971906,0.258937883647172,0.890652834388949,2.25530924795977,0.913396434936424,1.15307748628029,0.904335843315735,1.64624189989987,0.879666139307728,0,0,0,0.161766849947409,0.220841518460394,0.484875253135222,0,1.75668478206928,0.41889341362691,0.255457055208591,1.55759661857696,0.599902730993408,0.254140454146129,2.09706895166752,6.40500843946077,11.1832373380449,4.86708096538374,4.09144731728529,4.1557608911912,4.38051410282946,1.83310854930569,1.11966273549084,1.51633655060205,0,2.08192708740326,2.5289231487682,2.52086981727489,1.9591626318643,2.78949646520444,2.0498195245576,1.87403449119458,1.03481348295606,3.44908788692548,4.34943984385984,3.16712023495108,3.28793598641362,2.50242524303038,0.348252166522167,1.85203922767149,3.18454826909589,0.702213187313235,0.51469581422943,0.284163499395593,1.44988040774851,0.703578179943289,0.720248245844059,0.946978942340841,0.590292695242212,1.69693824176116,0.465067889500816,0.536546802799238,1.75148013550754,1.81015834904829,1.14917224855367,1.05389452409612,0.292399974850665,0.439100230582101,0.805238512562231,4.20579897128254,5.76265829323993,0,0.264450566663544,2.13288250535234,2.55460339046482,2.44848176511977,1.21010114774006,0.667134131534611,0.951128130562796,0.474529061544512,0.494096864172033,0,0.795825888164603,0.38992817423824,0.898819408654221,0.216138049874694,0,1.70701110857774,2.28497025219458,2.25415471346161,1.22190796707189,0.775809948670503,2.03393877681924,0.885311519739602,0.295220295959204,0.470996183524124,0.493588655687202,0.296452627087149,0.333690211432188,0.393117990226406,0.224862112384854,0,0,0.25462585178142,0,0.972811360650212,0,0,1.11642284300551,0.936113019343682,0.252578877947112,0,0,0.739012760666419,1.51593129416388,1.30371981153621,1.69745085775188,0.704070744865506,1.84256883185997,0.714130922658041,1.75620283072019,2.99506773801763,2.43611158613652,1.75400245523236,0.491589944147214,0.345369963731791,0.144649058581512,0,0,0,0.827810238914197,2.40825884981688,1.75817529888305,2.13115428989678,0.504941854408746,2.2085575359138,3.51394869866975,3.87762115919038,0.716906393857656,2.67358408898873,1.69845918473299,3.64329631507405,2.04579100537918,2.76701444562566,4.4984984299053,2.41298144854057,1.24645922567079,3.58351310577867,2.96946221350564,0,1.21390318077491,1.51161778482376,0.943025398779491,0.295301892880773,0.614870295887855,1.80899805217755,1.45413491791002,1.42598951353889,0.316036757935816,0,1.03135543248187,1.70219802876894,3.42116078659489,3.10460841078611,2.35770738534752,1.77340233642274,2.31879462882692,1.81003922662333,2.43571959291679,0.23467170806371,0.42366414172764,0,0.98931751764888,1.93757312035087,1.08563264870681,1.19372344003136,0.820704498725306,0,2.59595422814714,0.170870880797853,1.03193433981611,0.555583582109135,0.753473828018764,0.546776910884101,0.686334519619568,1.86976272993241,0.979660166265606,2.21119958087078,0,2.68885594543965,2.43983360552218,1.08005340821801,0.627264888043406,0.436725127492355,1.21377911746339,1.48776220305605,0,0.518459893167171,0.621339313086926,0,2.24274819065968,1.82004339502807,0.972255941720238,1.6790777052105,2.19642963138012,2.58185925020659,4.81756223922615,2.83120229949419,1.93267296660805,0.864090018773596,0.948033361884535,1.01362607645082,0.821687657318618,1.16928740680016,1.61124026100733,0.79472541912506,1.44234539423963,0.443068581523732,0.706765149637033,0.838274873204998,0.907435666231565,1.16949456887703,0.673482891482306,1.28564592399726,0.453460767230423,0.221985953374065,0.0897138566094757,0,0.579568782096571,0.375364950902364,1.09890974560359,0.214368379079066,0,4.51801474093653,3.68260189205742,2.29158205375759,4.46818274093588,8.22099023724771,4.5323633843382,8.10027000278167,3.60256962579376,3.17199686288943,5.1776031175182,3.42498247027783,2.39414924040619,1.87806966329548,1.21553358534147,2.30574478890781,1.10306105070008,0.666740183404846,1.64828045791115,3.20919209591815,1.26348605881899,2.02783439912192,0.943131706930381,0.561849044819294,0.832326981263301,1.32101578597911,1.42888107384922,1.73826488917283,0.964546102318525,1.64834360321323,1.32479028120958,1.71434626192708,1.77475806159337,0.715308569841963,1.59881058295561,1.12931256498397,1.52306294205018,1.64635175585495,0.789209134313529,1.90125759384206,2.24456908663095,1.18635018124174,1.97008964751127,0,1.39443157067369,0.964533054905707,1.74867404556562,1.87145286756327,1.28922632428979,0.57386499620653,0.661774257358546,0.231867835620421 | |phase1_expression=2.5623815536767,0.348975407639361,0,0,0.500895729946347,0.503637815735669,0.467225281191051,1.67860320474049,1.267098499365,0.936258105287974,1.02730780935303,0.797721589953364,0.856003649656029,1.57356724354195,0,0.202475267389826,0,1.73504190947031,1.7824876368746,0.84877930359606,1.9559956734746,0.595745707205312,1.30599894569468,0,1.14704640533585,0.57423196411502,0.430761996159075,0.861884930743556,0.190023419456374,0.504060259519861,0,1.90509202037889,0.61506478758457,15.8481681015439,0.866554859253824,0.997407872150954,0.408338712524738,0.418531630736908,0,0.523523743973798,0.588231488031014,0.683045484958446,0,1.25896817975577,1.31790010585369,1.28482726513177,1.56478268869608,1.09012578190223,0.659058548203415,0.777719596297134,0.839918529752175,2.87505128729943,1.17447824240415,1.45072428402269,1.68046899571232,1.02903774414379,0.573066879877513,0.515672092277442,1.82084814773638,3.70293685490423,3.80298842103708,0.677689064138264,0.889294796111139,0,0,0,0.898800331555214,1.15265491596466,3.83651565541367,3.64516033495565,2.73422449756797,1.71390590642282,4.19650227808066,6.00204916153275,4.79227355091182,1.83843757322004,0,1.78762273319263,2.4577045320999,4.2203612073662,3.65950574409639,3.12548022334056,1.95428099300967,2.8138130501584,2.75036845998258,3.53554302568401,4.41352210477219,6.71038004971082,0.37863096666592,0.302286240427142,0,0.860423876981386,2.03991400112325,0,0,0,0.280888840263504,0,0,0,2.67602497575693,0,2.54805239706646,0,1.73192832808971,0.506719730950197,1.01104889002957,0.11418387971906,0.258937883647172,0.890652834388949,2.25530924795977,0.913396434936424,1.15307748628029,0.904335843315735,1.64624189989987,0.879666139307728,0,0,0,0.161766849947409,0.220841518460394,0.484875253135222,0,1.75668478206928,0.41889341362691,0.255457055208591,1.55759661857696,0.599902730993408,0.254140454146129,2.09706895166752,6.40500843946077,11.1832373380449,4.86708096538374,4.09144731728529,4.1557608911912,4.38051410282946,1.83310854930569,1.11966273549084,1.51633655060205,0,2.08192708740326,2.5289231487682,2.52086981727489,1.9591626318643,2.78949646520444,2.0498195245576,1.87403449119458,1.03481348295606,3.44908788692548,4.34943984385984,3.16712023495108,3.28793598641362,2.50242524303038,0.348252166522167,1.85203922767149,3.18454826909589,0.702213187313235,0.51469581422943,0.284163499395593,1.44988040774851,0.703578179943289,0.720248245844059,0.946978942340841,0.590292695242212,1.69693824176116,0.465067889500816,0.536546802799238,1.75148013550754,1.81015834904829,1.14917224855367,1.05389452409612,0.292399974850665,0.439100230582101,0.805238512562231,4.20579897128254,5.76265829323993,0,0.264450566663544,2.13288250535234,2.55460339046482,2.44848176511977,1.21010114774006,0.667134131534611,0.951128130562796,0.474529061544512,0.494096864172033,0,0.795825888164603,0.38992817423824,0.898819408654221,0.216138049874694,0,1.70701110857774,2.28497025219458,2.25415471346161,1.22190796707189,0.775809948670503,2.03393877681924,0.885311519739602,0.295220295959204,0.470996183524124,0.493588655687202,0.296452627087149,0.333690211432188,0.393117990226406,0.224862112384854,0,0,0.25462585178142,0,0.972811360650212,0,0,1.11642284300551,0.936113019343682,0.252578877947112,0,0,0.739012760666419,1.51593129416388,1.30371981153621,1.69745085775188,0.704070744865506,1.84256883185997,0.714130922658041,1.75620283072019,2.99506773801763,2.43611158613652,1.75400245523236,0.491589944147214,0.345369963731791,0.144649058581512,0,0,0,0.827810238914197,2.40825884981688,1.75817529888305,2.13115428989678,0.504941854408746,2.2085575359138,3.51394869866975,3.87762115919038,0.716906393857656,2.67358408898873,1.69845918473299,3.64329631507405,2.04579100537918,2.76701444562566,4.4984984299053,2.41298144854057,1.24645922567079,3.58351310577867,2.96946221350564,0,1.21390318077491,1.51161778482376,0.943025398779491,0.295301892880773,0.614870295887855,1.80899805217755,1.45413491791002,1.42598951353889,0.316036757935816,0,1.03135543248187,1.70219802876894,3.42116078659489,3.10460841078611,2.35770738534752,1.77340233642274,2.31879462882692,1.81003922662333,2.43571959291679,0.23467170806371,0.42366414172764,0,0.98931751764888,1.93757312035087,1.08563264870681,1.19372344003136,0.820704498725306,0,2.59595422814714,0.170870880797853,1.03193433981611,0.555583582109135,0.753473828018764,0.546776910884101,0.686334519619568,1.86976272993241,0.979660166265606,2.21119958087078,0,2.68885594543965,2.43983360552218,1.08005340821801,0.627264888043406,0.436725127492355,1.21377911746339,1.48776220305605,0,0.518459893167171,0.621339313086926,0,2.24274819065968,1.82004339502807,0.972255941720238,1.6790777052105,2.19642963138012,2.58185925020659,4.81756223922615,2.83120229949419,1.93267296660805,0.864090018773596,0.948033361884535,1.01362607645082,0.821687657318618,1.16928740680016,1.61124026100733,0.79472541912506,1.44234539423963,0.443068581523732,0.706765149637033,0.838274873204998,0.907435666231565,1.16949456887703,0.673482891482306,1.28564592399726,0.453460767230423,0.221985953374065,0.0897138566094757,0,0.579568782096571,0.375364950902364,1.09890974560359,0.214368379079066,0,4.51801474093653,3.68260189205742,2.29158205375759,4.46818274093588,8.22099023724771,4.5323633843382,8.10027000278167,3.60256962579376,3.17199686288943,5.1776031175182,3.42498247027783,2.39414924040619,1.87806966329548,1.21553358534147,2.30574478890781,1.10306105070008,0.666740183404846,1.64828045791115,3.20919209591815,1.26348605881899,2.02783439912192,0.943131706930381,0.561849044819294,0.832326981263301,1.32101578597911,1.42888107384922,1.73826488917283,0.964546102318525,1.64834360321323,1.32479028120958,1.71434626192708,1.77475806159337,0.715308569841963,1.59881058295561,1.12931256498397,1.52306294205018,1.64635175585495,0.789209134313529,1.90125759384206,2.24456908663095,1.18635018124174,1.97008964751127,0,1.39443157067369,0.964533054905707,1.74867404556562,1.87145286756327,1.28922632428979,0.57386499620653,0.661774257358546,0.231867835620421 | ||
|short_description=p2@Spin1 | |short_description=p2@Spin1 | ||
}} | }} |
Latest revision as of 17:15, 1 October 2015
Short description: | p2@Spin1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Spin1_5end |
Coexpression cluster: | NA |
Association with transcript: | -316bp_to_uc007qlz.1_5end |
EntrezGene: | Spin1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.33e-13 | 33 |
neuronal stem cell | 4.33e-13 | 33 |
neuroblast | 4.33e-13 | 33 |
electrically signaling cell | 4.33e-13 | 33 |
electrically responsive cell | 6.08e-11 | 39 |
electrically active cell | 6.08e-11 | 39 |
CNS neuron (sensu Vertebrata) | 1.91e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.91e-10 | 23 |
ectodermal cell | 1.84e-09 | 44 |
neurectodermal cell | 1.84e-09 | 44 |
neural cell | 4.55e-09 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.69e-25 | 73 |
neurectoderm | 2.68e-24 | 64 |
neural plate | 2.68e-24 | 64 |
presumptive neural plate | 2.68e-24 | 64 |
nervous system | 9.83e-24 | 75 |
ecto-epithelium | 5.28e-22 | 73 |
ectoderm-derived structure | 2.03e-21 | 95 |
ectoderm | 2.03e-21 | 95 |
presumptive ectoderm | 2.03e-21 | 95 |
neural tube | 2.54e-21 | 52 |
neural rod | 2.54e-21 | 52 |
future spinal cord | 2.54e-21 | 52 |
neural keel | 2.54e-21 | 52 |
regional part of nervous system | 1.54e-20 | 54 |
pre-chordal neural plate | 7.74e-20 | 49 |
anterior neural tube | 8.44e-19 | 40 |
brain | 9.39e-19 | 47 |
future brain | 9.39e-19 | 47 |
regional part of forebrain | 1.56e-18 | 39 |
forebrain | 1.56e-18 | 39 |
future forebrain | 1.56e-18 | 39 |
regional part of brain | 4.76e-18 | 46 |
gray matter | 1.28e-17 | 34 |
structure with developmental contribution from neural crest | 3.34e-15 | 92 |
brain grey matter | 6.36e-15 | 29 |
regional part of telencephalon | 6.36e-15 | 29 |
telencephalon | 6.36e-15 | 29 |
cerebral cortex | 1.41e-10 | 21 |
cerebral hemisphere | 1.41e-10 | 21 |
pallium | 1.41e-10 | 21 |
regional part of cerebral cortex | 2.76e-08 | 17 |
occipital lobe | 1.23e-07 | 10 |
visual cortex | 1.23e-07 | 10 |
neocortex | 1.23e-07 | 10 |