FFCP PHASE1:Mm9::chr1:87791024..87791029,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=64294|HGNC=|MCL_coexpression_id=204|UniProt=Q91VK4|association_with_transcript=-55bp_to_NM_022417,uc011wof.1_5end|description=CAGE_peak_3_at_Itm2c_5end|id=chr1:87791024..87791029,+|ontology_enrichment_celltype=CL:0000117!1.08e-09!23;CL:0000337!1.08e-09!23|ontology_enrichment_celltype_v019_2=CL:0000878,2.59e-08,2;CL:0000129,2.59e-08,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!6.44e-20!52;UBERON:0005068!6.44e-20!52;UBERON:0006241!6.44e-20!52;UBERON:0007135!6.44e-20!52;UBERON:0001017!1.73e-19!73;UBERON:0005743!1.73e-19!73;UBERON:0000073!4.92e-19!75;UBERON:0001016!4.92e-19!75;UBERON:0002020!3.31e-18!34;UBERON:0003080!2.07e-17!40;UBERON:0000955!2.18e-17!50;UBERON:0006238!2.18e-17!50;UBERON:0002346!7.76e-17!71;UBERON:0003075!7.76e-17!71;UBERON:0007284!7.76e-17!71;UBERON:0002616!9.24e-17!49;UBERON:0002780!9.73e-17!39;UBERON:0001890!9.73e-17!39;UBERON:0006240!9.73e-17!39;UBERON:0003056!2.22e-16!49;UBERON:0000033!5.49e-16!63;UBERON:0004121!3.01e-15!102;UBERON:0000924!3.01e-15!102;UBERON:0006601!3.01e-15!102;UBERON:0002791!3.37e-15!29;UBERON:0003528!3.37e-15!29;UBERON:0001893!3.37e-15!29;UBERON:0007811!1.78e-12!86;UBERON:0000153!6.13e-12!94;UBERON:0002021!6.67e-10!10;UBERON:0000411!6.67e-10!10;UBERON:0001950!6.67e-10!10;UBERON:0000956!8.33e-10!21;UBERON:0001869!8.33e-10!21;UBERON:0000203!8.33e-10!21;UBERON:0002619!9.02e-09!17;UBERON:0002420!7.32e-07!8;UBERON:0007245!7.32e-07!8;UBERON:0010009!7.32e-07!8;UBERON:0010011!7.32e-07!8;UBERON:0000454!7.32e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0002021,1.49e-27,10;UBERON:0000411,1.49e-27,10;UBERON:0001950,1.49e-27,10;UBERON:0003528,8.19e-24,29;UBERON:0002791,8.19e-24,29;UBERON:0001893,8.19e-24,29;UBERON:0002619,3.96e-23,17;UBERON:0002020,1.18e-22,34;UBERON:0002780,4.50e-22,39;UBERON:0001890,4.50e-22,39;UBERON:0006240,4.50e-22,39;UBERON:0000956,6.96e-22,21;UBERON:0001869,6.96e-22,21;UBERON:0000203,6.96e-22,21;UBERON:0003080,1.95e-21,40;UBERON:0001017,1.59e-20,73;UBERON:0001016,7.28e-20,75;UBERON:0001049,7.36e-20,52;UBERON:0005068,7.36e-20,52;UBERON:0006241,7.36e-20,52;UBERON:0007135,7.36e-20,52;UBERON:0002616,3.40e-18,46;UBERON:0000955,9.80e-18,47;UBERON:0006238,9.80e-18,47;UBERON:0000073,6.10e-17,54;UBERON:0003056,7.16e-17,49;UBERON:0002346,1.97e-15,64;UBERON:0003075,1.97e-15,64;UBERON:0007284,1.97e-15,64;UBERON:0004121,8.93e-15,95;UBERON:0000924,8.93e-15,95;UBERON:0006601,8.93e-15,95;UBERON:0010371,4.60e-13,73;UBERON:0010314,1.39e-09,92;UBERON:0000025,5.26e-07,114|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0.140788722151667,0.468129052643987,0,0,0.342401459862411,0.174840804837995,0,0,0,0,0,0,0.255129870453209,0,0,0.159992422793407,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202753862439029,0.183546752161682,0,0.218025156380447,0.219686182734472,0,0.419959264876088,0,0.335565212115473,0,0.336093799142464,0.257259436035947,0,0,0.606949382578793,1.5869729378161,1.90149421051854,0.338844532069132,0.889294796111139,0,0,0,5.09320187881288,14.2160772968975,0.103689612308478,0.135005938331691,0.210324961351382,1.42825492201902,0.662605622854841,0.244981598429908,0,0,0,0.893811366596314,0.46081959976873,0.791317726381163,0.914876436024097,1.04182674111352,0.837548997004143,1.68828783009504,2.13917546887534,0.294628585473668,0.711858403995515,0.372798891650601,0.075726193333184,0,0.289864488701678,0,0.679971333707751,0,0,0,0,0,0.259786004602869,0,0.14084341977668,0,0,0,0.216491041011214,0,0,0,0.258937883647172,0.742210695324124,0,0.304465478312141,0,0.452167921657868,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19980546198682,1.39777249780371,0.748953197024114,0.457500602818626,0.502617408451458,2.9550134432687,3.83573185995496,1.45451631191692,2.59586020908412,0,0,0,0.210441855886474,0,0.459804208866946,0.180062129805349,0,0,0.12811372028485,0,0.776110112217047,0,0.378212160335639,0.351902248327898,0,0,0,0,0,0,0.51469581422943,0.284163499395593,0,0,0.180062061461015,0,0,0,0,0,0,0,0,0,0,0,0,4.83666881697493,1.44066457330998,0,0,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0.379335801906163,0.114248512609729,0,0,0.193952487167626,0.140271639780637,0,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0.167506257441816,0,0.390267295715598,0.157635144106191,0,0,0,0,0,0,0,0,0,0.160550589987792,0.35163505977661,0.163934945376675,0,0,0,0,0,0,0,0,0,0,0.642642632843614,0.141940085208269,0.35613120733451,0.162886959353576,0.164970122972535,0,0,0,0.188605079755898,0,0.307435147943927,0,0,0,0,0,0,0,0,0.258717367565509,0,0.177340233642274,0.535106452806212,0.822745103010605,0.608929898229199,0,0,0,0,0,0,0.119372344003136,0,0,1.11255181206306,0,0.206386867963223,0,0,0,0,0.509935289981566,0.559805809294632,1.10559979043539,0,0.158167996790568,0.203319467126849,0,0,0,0,0,0,0,0,0,0,0.165458490457098,0,0.258319646955462,0,0.234714477291508,0.13020438484395,0,0,0,0,0.202725215290164,0.205421914329655,0,0,0.198681354781265,0,0,0.201932899896295,0,0,0.0974578807397524,0,0,0,0,0,0,0,0.187682475451182,0,0,0,10.1655331671072,6.90487854760765,8.59343270159095,6.18671456437275,6.16574267793578,3.0215755895588,5.40018000185445,1.80128481289688,2.26571204492102,0.51776031175182,0,0.399024873401031,0.341467211508268,0,0,0.183843508450014,0.222246727801615,0.206035057238894,0.320919209591815,0,0,0,0,0.192075457214608,0.287177344778066,0,0.231768651889711,0,0,0.147198920134397,0,0.177475806159338,0,0.145346416632329,0,0.169229215783353,0.365855945745545,0,0,0,0.118635018124174,0.0985044823755635,0,0.154936841185966,0,0,0,0.429742108096597,0,0,0|short_description=p3@Itm2c}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=64294 | |||
|HGNC= | |||
|MCL_coexpression_id=204 | |||
|TSSclassifier=NA | |||
|UniProt=Q91VK4 | |||
|association_with_transcript=-55bp_to_NM_022417,uc011wof.1_5end | |||
|cluster_id=chr1:87791024..87791029,+ | |||
|description=CAGE_peak_3_at_Itm2c_5end | |||
|id=chr1:87791024..87791029,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.08e-09!23;CL:0000337!1.08e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000878,2.59e-08,2;CL:0000129,2.59e-08,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!6.44e-20!52;UBERON:0005068!6.44e-20!52;UBERON:0006241!6.44e-20!52;UBERON:0007135!6.44e-20!52;UBERON:0001017!1.73e-19!73;UBERON:0005743!1.73e-19!73;UBERON:0000073!4.92e-19!75;UBERON:0001016!4.92e-19!75;UBERON:0002020!3.31e-18!34;UBERON:0003080!2.07e-17!40;UBERON:0000955!2.18e-17!50;UBERON:0006238!2.18e-17!50;UBERON:0002346!7.76e-17!71;UBERON:0003075!7.76e-17!71;UBERON:0007284!7.76e-17!71;UBERON:0002616!9.24e-17!49;UBERON:0002780!9.73e-17!39;UBERON:0001890!9.73e-17!39;UBERON:0006240!9.73e-17!39;UBERON:0003056!2.22e-16!49;UBERON:0000033!5.49e-16!63;UBERON:0004121!3.01e-15!102;UBERON:0000924!3.01e-15!102;UBERON:0006601!3.01e-15!102;UBERON:0002791!3.37e-15!29;UBERON:0003528!3.37e-15!29;UBERON:0001893!3.37e-15!29;UBERON:0007811!1.78e-12!86;UBERON:0000153!6.13e-12!94;UBERON:0002021!6.67e-10!10;UBERON:0000411!6.67e-10!10;UBERON:0001950!6.67e-10!10;UBERON:0000956!8.33e-10!21;UBERON:0001869!8.33e-10!21;UBERON:0000203!8.33e-10!21;UBERON:0002619!9.02e-09!17;UBERON:0002420!7.32e-07!8;UBERON:0007245!7.32e-07!8;UBERON:0010009!7.32e-07!8;UBERON:0010011!7.32e-07!8;UBERON:0000454!7.32e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,1.49e-27,10;UBERON:0000411,1.49e-27,10;UBERON:0001950,1.49e-27,10;UBERON:0003528,8.19e-24,29;UBERON:0002791,8.19e-24,29;UBERON:0001893,8.19e-24,29;UBERON:0002619,3.96e-23,17;UBERON:0002020,1.18e-22,34;UBERON:0002780,4.50e-22,39;UBERON:0001890,4.50e-22,39;UBERON:0006240,4.50e-22,39;UBERON:0000956,6.96e-22,21;UBERON:0001869,6.96e-22,21;UBERON:0000203,6.96e-22,21;UBERON:0003080,1.95e-21,40;UBERON:0001017,1.59e-20,73;UBERON:0001016,7.28e-20,75;UBERON:0001049,7.36e-20,52;UBERON:0005068,7.36e-20,52;UBERON:0006241,7.36e-20,52;UBERON:0007135,7.36e-20,52;UBERON:0002616,3.40e-18,46;UBERON:0000955,9.80e-18,47;UBERON:0006238,9.80e-18,47;UBERON:0000073,6.10e-17,54;UBERON:0003056,7.16e-17,49;UBERON:0002346,1.97e-15,64;UBERON:0003075,1.97e-15,64;UBERON:0007284,1.97e-15,64;UBERON:0004121,8.93e-15,95;UBERON:0000924,8.93e-15,95;UBERON:0006601,8.93e-15,95;UBERON:0010371,4.60e-13,73;UBERON:0010314,1.39e-09,92;UBERON:0000025,5.26e-07,114 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0.140788722151667,0.468129052643987,0,0,0.342401459862411,0.174840804837995,0,0,0,0,0,0,0.255129870453209,0,0,0.159992422793407,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202753862439029,0.183546752161682,0,0.218025156380447,0.219686182734472,0,0.419959264876088,0,0.335565212115473,0,0.336093799142464,0.257259436035947,0,0,0.606949382578793,1.5869729378161,1.90149421051854,0.338844532069132,0.889294796111139,0,0,0,5.09320187881288,14.2160772968975,0.103689612308478,0.135005938331691,0.210324961351382,1.42825492201902,0.662605622854841,0.244981598429908,0,0,0,0.893811366596314,0.46081959976873,0.791317726381163,0.914876436024097,1.04182674111352,0.837548997004143,1.68828783009504,2.13917546887534,0.294628585473668,0.711858403995515,0.372798891650601,0.075726193333184,0,0.289864488701678,0,0.679971333707751,0,0,0,0,0,0.259786004602869,0,0.14084341977668,0,0,0,0.216491041011214,0,0,0,0.258937883647172,0.742210695324124,0,0.304465478312141,0,0.452167921657868,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19980546198682,1.39777249780371,0.748953197024114,0.457500602818626,0.502617408451458,2.9550134432687,3.83573185995496,1.45451631191692,2.59586020908412,0,0,0,0.210441855886474,0,0.459804208866946,0.180062129805349,0,0,0.12811372028485,0,0.776110112217047,0,0.378212160335639,0.351902248327898,0,0,0,0,0,0,0.51469581422943,0.284163499395593,0,0,0.180062061461015,0,0,0,0,0,0,0,0,0,0,0,0,4.83666881697493,1.44066457330998,0,0,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0.379335801906163,0.114248512609729,0,0,0.193952487167626,0.140271639780637,0,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0.167506257441816,0,0.390267295715598,0.157635144106191,0,0,0,0,0,0,0,0,0,0.160550589987792,0.35163505977661,0.163934945376675,0,0,0,0,0,0,0,0,0,0,0.642642632843614,0.141940085208269,0.35613120733451,0.162886959353576,0.164970122972535,0,0,0,0.188605079755898,0,0.307435147943927,0,0,0,0,0,0,0,0,0.258717367565509,0,0.177340233642274,0.535106452806212,0.822745103010605,0.608929898229199,0,0,0,0,0,0,0.119372344003136,0,0,1.11255181206306,0,0.206386867963223,0,0,0,0,0.509935289981566,0.559805809294632,1.10559979043539,0,0.158167996790568,0.203319467126849,0,0,0,0,0,0,0,0,0,0,0.165458490457098,0,0.258319646955462,0,0.234714477291508,0.13020438484395,0,0,0,0,0.202725215290164,0.205421914329655,0,0,0.198681354781265,0,0,0.201932899896295,0,0,0.0974578807397524,0,0,0,0,0,0,0,0.187682475451182,0,0,0,10.1655331671072,6.90487854760765,8.59343270159095,6.18671456437275,6.16574267793578,3.0215755895588,5.40018000185445,1.80128481289688,2.26571204492102,0.51776031175182,0,0.399024873401031,0.341467211508268,0,0,0.183843508450014,0.222246727801615,0.206035057238894,0.320919209591815,0,0,0,0,0.192075457214608,0.287177344778066,0,0.231768651889711,0,0,0.147198920134397,0,0.177475806159338,0,0.145346416632329,0,0.169229215783353,0.365855945745545,0,0,0,0.118635018124174,0.0985044823755635,0,0.154936841185966,0,0,0,0.429742108096597,0,0,0 | |||
|short_description=p3@Itm2c | |||
}} |
Latest revision as of 17:20, 1 October 2015
Short description: | p3@Itm2c |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Itm2c_5end |
Coexpression cluster: | MCL_coexpression_mm9:204 |
Association with transcript: | -55bp_to_NM_022417, uc011wof.1_5end |
EntrezGene: | Itm2c |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system macrophage | 2.59e-08 | 2 |
microglial cell | 2.59e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
occipital lobe | 1.49e-27 | 10 |
visual cortex | 1.49e-27 | 10 |
neocortex | 1.49e-27 | 10 |
brain grey matter | 8.19e-24 | 29 |
regional part of telencephalon | 8.19e-24 | 29 |
telencephalon | 8.19e-24 | 29 |
regional part of cerebral cortex | 3.96e-23 | 17 |
gray matter | 1.18e-22 | 34 |
regional part of forebrain | 4.50e-22 | 39 |
forebrain | 4.50e-22 | 39 |
future forebrain | 4.50e-22 | 39 |
cerebral cortex | 6.96e-22 | 21 |
cerebral hemisphere | 6.96e-22 | 21 |
pallium | 6.96e-22 | 21 |
anterior neural tube | 1.95e-21 | 40 |
central nervous system | 1.59e-20 | 73 |
nervous system | 7.28e-20 | 75 |
neural tube | 7.36e-20 | 52 |
neural rod | 7.36e-20 | 52 |
future spinal cord | 7.36e-20 | 52 |
neural keel | 7.36e-20 | 52 |
regional part of brain | 3.40e-18 | 46 |
brain | 9.80e-18 | 47 |
future brain | 9.80e-18 | 47 |
regional part of nervous system | 6.10e-17 | 54 |
pre-chordal neural plate | 7.16e-17 | 49 |
neurectoderm | 1.97e-15 | 64 |
neural plate | 1.97e-15 | 64 |
presumptive neural plate | 1.97e-15 | 64 |
ectoderm-derived structure | 8.93e-15 | 95 |
ectoderm | 8.93e-15 | 95 |
presumptive ectoderm | 8.93e-15 | 95 |
ecto-epithelium | 4.60e-13 | 73 |
structure with developmental contribution from neural crest | 1.39e-09 | 92 |
tube | 5.26e-07 | 114 |