FFCP PHASE1:Mm9::chr11:59263542..59263597,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr11:59263542..59263597,+ to FFCP PHASE1:Mm9::chr11:59263542..59263597,+: NSchange) |
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(6 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=194952 | |EntrezGene=194952 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q8BFT6 | |UniProt=Q8BFT6 | ||
|association_with_transcript=0bp_to_ENSMUST00000045279,ENSMUST00000108777,ENSMUST00000147163,NM_001205068,NM_178659,NR_037992,uc007jdu.1,uc007jdv.1,uc007jdw.1_5end | |||
|cluster_id=chr11:59263542..59263597,+ | |||
|description=CAGE_peak_1_at_Jmjd4_5end | |||
|id=chr11:59263542..59263597,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.84e-09!33;CL:0000047!1.84e-09!33;CL:0000031!1.84e-09!33;CL:0000404!1.84e-09!33;CL:0000117!3.40e-09!23;CL:0000337!3.40e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.84e-09,33;CL:0000047,1.84e-09,33;CL:0000031,1.84e-09,33;CL:0000404,1.84e-09,33;CL:0000117,3.40e-09,23;CL:0000337,3.40e-09,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!1.96e-14!94;UBERON:0001017!6.92e-14!73;UBERON:0005743!6.92e-14!73;UBERON:0002020!3.27e-13!34;UBERON:0001049!4.19e-13!52;UBERON:0005068!4.19e-13!52;UBERON:0006241!4.19e-13!52;UBERON:0007135!4.19e-13!52;UBERON:0002346!6.70e-13!71;UBERON:0003075!6.70e-13!71;UBERON:0007284!6.70e-13!71;UBERON:0007811!7.73e-13!86;UBERON:0003056!1.65e-12!49;UBERON:0000073!1.78e-12!75;UBERON:0001016!1.78e-12!75;UBERON:0003080!1.17e-11!40;UBERON:0002780!1.65e-11!39;UBERON:0001890!1.65e-11!39;UBERON:0006240!1.65e-11!39;UBERON:0002616!1.82e-11!49;UBERON:0000033!2.07e-11!63;UBERON:0000955!3.32e-11!50;UBERON:0006238!3.32e-11!50;UBERON:0002791!9.66e-11!29;UBERON:0003528!9.66e-11!29;UBERON:0001893!9.66e-11!29;UBERON:0004121!2.81e-09!102;UBERON:0000924!2.81e-09!102;UBERON:0006601!2.81e-09!102;UBERON:0000956!9.55e-09!21;UBERON:0001869!9.55e-09!21;UBERON:0000203!9.55e-09!21;UBERON:0002619!1.11e-07!17;UBERON:0002021!6.32e-07!10;UBERON:0000411!6.32e-07!10;UBERON:0001950!6.32e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,5.23e-15,64;UBERON:0003075,5.23e-15,64;UBERON:0007284,5.23e-15,64;UBERON:0001017,6.92e-14,73;UBERON:0000073,7.55e-14,54;UBERON:0002020,3.27e-13,34;UBERON:0001049,4.19e-13,52;UBERON:0005068,4.19e-13,52;UBERON:0006241,4.19e-13,52;UBERON:0007135,4.19e-13,52;UBERON:0003056,1.65e-12,49;UBERON:0001016,1.78e-12,75;UBERON:0010314,2.61e-12,92;UBERON:0010371,2.77e-12,73;UBERON:0003080,1.17e-11,40;UBERON:0002780,1.65e-11,39;UBERON:0001890,1.65e-11,39;UBERON:0006240,1.65e-11,39;UBERON:0002616,3.60e-11,46;UBERON:0000955,6.67e-11,47;UBERON:0006238,6.67e-11,47;UBERON:0003528,9.66e-11,29;UBERON:0002791,9.66e-11,29;UBERON:0001893,9.66e-11,29;UBERON:0004121,1.86e-10,95;UBERON:0000924,1.86e-10,95;UBERON:0006601,1.86e-10,95;UBERON:0000956,9.55e-09,21;UBERON:0001869,9.55e-09,21;UBERON:0000203,9.55e-09,21;UBERON:0002619,1.11e-07,17;UBERON:0002021,6.32e-07,10;UBERON:0000411,6.32e-07,10;UBERON:0001950,6.32e-07,10 | |||
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|phase1_expression=12.9720566154883,7.32848356042658,5.0049916332849,7.86406949397758,13.023288978605,9.9048770428015,7.47560449905682,19.6267451631196,11.1223090499817,11.2350972634557,18.320322600129,26.803445422433,18.1472773727078,16.6098764596095,11.6588416635482,13.5658429151183,5.59649502502517,18.7699988388151,22.0754238105239,21.2194825899015,10.5453679787327,11.1205865344992,12.27639008953,9.27956052201759,10.0940083669555,5.16808767703518,8.61523992318149,11.635446565038,10.4512880701006,9.32511480111744,10.199603490144,15.8757668364908,15.3766196896143,15.8481681015439,14.1537293678125,12.3013637565284,11.637653306955,2.09265815368454,3.906676722619,0.523523743973798,3.52938892818609,1.36609096991689,1.94204141212461,9.56815816614387,10.5432008468295,7.15832333430558,6.25913075478431,17.8780628231966,11.4236815021925,11.0825042472342,13.0187372111587,8.62515386189829,20.972825757217,15.9579671242496,23.19047214083,4.63066984864705,6.5902691185914,6.18806510732931,25.4918740683093,22.7466121086974,23.4517619297286,13.8926258148344,8.00365316500025,7.19919773825119,8.89979726310277,4.9733608046227,8.98800331555214,7.68436610643109,15.0349937847293,15.7956947848078,16.6156719467592,20.8525218614777,17.4486147351775,18.2511290830282,18.1147940224467,21.1420320920305,22.0231761998777,11.8749224419225,12.7493422602682,26.1134849705784,25.3420772778675,23.4411016750542,13.6799669510677,11.8180148106653,14.3630352910202,18.8562294703147,19.362548588678,23.4863301739879,5.6794644999888,6.65029728939713,14.2033599463822,11.185510400758,9.51959867190851,10.7940638327563,17.5439632710871,16.5769948226014,11.2355536105401,4.4311883870295,6.75443611967459,6.36011234118612,12.5350643601246,6.41632387071589,5.09610479413291,7.11066703153331,19.2677026499981,18.7486300451573,17.6933555755174,7.4219521817389,11.6522047641227,8.46120192669501,13.7053408145247,12.7875500891099,11.761390360059,9.49552635481522,11.5236932992991,8.54532821041793,4.44950941921873,8.6759614151947,6.19227386364912,9.70601099684455,10.1587098491781,8.24287930329878,13.0474232852686,12.0040126774734,14.8707161837553,9.96282515313506,3.71426885968353,1.19980546198682,1.65191295194984,14.5296920222678,13.2675174817402,19.2251158732683,17.7300806596122,21.4800984157478,11.6361304953354,13.7905073607594,10.1839363850316,8.33526703087623,6.06534620240819,9.25944165900485,20.5590299881072,19.0818746679783,18.546399369951,14.0155480587215,13.4712268319629,12.1708034270607,15.554486276915,12.9351685369508,27.1615671095381,25.15110866232,19.1786725338704,12.7133524807993,16.9608822027615,15.3230953269753,9.05441400194951,16.9179126795719,2.80885274925294,3.08817488537658,1.42081749697796,19.4698226183372,14.0715635988658,19.2666405763286,16.3353867553795,13.9702604540657,11.8785676923281,14.4171045745253,18.2425912951741,11.0927075248811,13.1647879930784,14.1184019108022,10.701082860053,10.5263990946239,14.7098577245004,12.3469905259542,15.5614561937454,17.8024979416162,8.92130714056255,5.81791246659797,19.6225190492415,16.0243303583703,11.8558064416326,10.8909103296605,12.2307924114679,10.4624094361908,9.49058123089023,10.5407331023367,9.80207314321051,7.95825888164603,9.35827618171777,7.19055526923377,7.5648317456143,7.36822711041159,12.7077493638565,13.0243304375091,12.3978509240388,14.6628956048626,13.1887691273986,10.1696938840962,10.7502113111237,12.3992524302866,10.5189147653721,12.2163192282583,13.6368208460088,12.5133829287071,14.3488066432638,11.6928298440124,9.73728582664814,11.576503668116,10.6942857748196,9.20627639842594,7.13394997810156,6.31491250332587,7.18841032636773,16.0020607497456,13.4176199439261,13.639259409144,9.68746033018326,12.5435315554475,13.4869828821621,17.0542270593436,11.7334783038259,12.2216461758135,10.0916806764056,10.887906733718,12.1402256851867,13.0739544064725,11.0344600874334,11.2946991720875,10.6834695000516,11.6342953448174,8.63424909329478,9.69148692496127,3.01582567878545,5.98296252200581,10.3270497333998,6.34654516500885,14.6101036888891,12.0728037189969,8.6885521049638,12.1186045058099,15.1443945319803,16.0079885161622,16.3721782276927,14.0991590792006,10.2487390077901,9.90767857760913,21.0501564870945,13.7360253218317,15.0209355619679,11.2462460747632,9.65192579416227,14.6013795007149,11.2392001953967,12.5377293459127,6.63725691699814,13.8384962608339,12.3952658355548,9.9960692270626,9.15435867930396,10.4527950300935,8.01127708821486,9.45187696641514,8.19943970284859,9.7971394960103,9.48767477174989,9.28219889233682,6.12791290356818,19.8067203434441,22.637769661982,19.9333442579381,15.2512600932355,15.8748247665843,13.657568709976,13.700922710157,4.4587624532105,9.53244318887191,7.05690873775878,10.8824926941377,9.20347232166662,9.77069383836125,11.9372344003136,12.1464265811345,10.2018292820448,10.3838169125885,8.71441492069049,10.3193433981611,11.4820606969221,6.78126445216888,10.2520670790769,10.2950177942935,2.37969801991397,3.35883485576779,2.3493995546752,6.68269432610579,17.7148156405436,15.045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| ||
|short_description=p1@Jmjd4 | |||
}} | }} |
Latest revision as of 19:16, 1 October 2015
Short description: | p1@Jmjd4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Jmjd4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000045279, ENSMUST00000108777, ENSMUST00000147163, NM_001205068, NM_178659, NR_037992, uc007jdu.1, uc007jdv.1, uc007jdw.1_5end |
EntrezGene: | Jmjd4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.84e-09 | 33 |
neuronal stem cell | 1.84e-09 | 33 |
neuroblast | 1.84e-09 | 33 |
electrically signaling cell | 1.84e-09 | 33 |
CNS neuron (sensu Vertebrata) | 3.40e-09 | 23 |
neuroblast (sensu Vertebrata) | 3.40e-09 | 23 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 5.23e-15 | 64 |
neural plate | 5.23e-15 | 64 |
presumptive neural plate | 5.23e-15 | 64 |
central nervous system | 6.92e-14 | 73 |
regional part of nervous system | 7.55e-14 | 54 |
gray matter | 3.27e-13 | 34 |
neural tube | 4.19e-13 | 52 |
neural rod | 4.19e-13 | 52 |
future spinal cord | 4.19e-13 | 52 |
neural keel | 4.19e-13 | 52 |
pre-chordal neural plate | 1.65e-12 | 49 |
nervous system | 1.78e-12 | 75 |
structure with developmental contribution from neural crest | 2.61e-12 | 92 |
ecto-epithelium | 2.77e-12 | 73 |
anterior neural tube | 1.17e-11 | 40 |
regional part of forebrain | 1.65e-11 | 39 |
forebrain | 1.65e-11 | 39 |
future forebrain | 1.65e-11 | 39 |
regional part of brain | 3.60e-11 | 46 |
brain | 6.67e-11 | 47 |
future brain | 6.67e-11 | 47 |
brain grey matter | 9.66e-11 | 29 |
regional part of telencephalon | 9.66e-11 | 29 |
telencephalon | 9.66e-11 | 29 |
ectoderm-derived structure | 1.86e-10 | 95 |
ectoderm | 1.86e-10 | 95 |
presumptive ectoderm | 1.86e-10 | 95 |
cerebral cortex | 9.55e-09 | 21 |
cerebral hemisphere | 9.55e-09 | 21 |
pallium | 9.55e-09 | 21 |
regional part of cerebral cortex | 1.11e-07 | 17 |
occipital lobe | 6.32e-07 | 10 |
visual cortex | 6.32e-07 | 10 |
neocortex | 6.32e-07 | 10 |