FFCP PHASE1:Mm9::chr1:94727911..94727952,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=14733 | |EntrezGene=14733 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q9QZF2 | |UniProt=Q9QZF2 | ||
|association_with_transcript=-269bp_to_ENSMUST00000045970_5end | |association_with_transcript=-269bp_to_ENSMUST00000045970_5end | ||
|cluster_id=chr1:94727911..94727952,+ | |||
|description=CAGE_peak_4_at_Gpc1_5end | |description=CAGE_peak_4_at_Gpc1_5end | ||
|id=chr1:94727911..94727952,+ | |id=chr1:94727911..94727952,+ | ||
|ontology_enrichment_celltype=CL:0000221!2.02e-15!44;CL:0000133!2.02e-15!44;CL:0002319!2.21e-15!43;CL:0000540!7.45e-15!33;CL:0000047!7.45e-15!33;CL:0000031!7.45e-15!33;CL:0000404!7.45e-15!33;CL:0000055!1.08e-11!50;CL:0000117!1.13e-11!23;CL:0000337!1.13e-11!23;CL:0000393!1.35e-11!39;CL:0000211!1.35e-11!39 | |ontology_enrichment_celltype=CL:0000221!2.02e-15!44;CL:0000133!2.02e-15!44;CL:0002319!2.21e-15!43;CL:0000540!7.45e-15!33;CL:0000047!7.45e-15!33;CL:0000031!7.45e-15!33;CL:0000404!7.45e-15!33;CL:0000055!1.08e-11!50;CL:0000117!1.13e-11!23;CL:0000337!1.13e-11!23;CL:0000393!1.35e-11!39;CL:0000211!1.35e-11!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.26e-15,44;CL:0000133,1.26e-15,44;CL:0002319,1.38e-15,43;CL:0000540,2.95e-15,33;CL:0000047,2.95e-15,33;CL:0000031,2.95e-15,33;CL:0000404,2.95e-15,33;CL:0000117,5.57e-12,23;CL:0000337,5.57e-12,23;CL:0000393,9.00e-12,39;CL:0000211,9.00e-12,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.74e-21!75;UBERON:0001016!1.74e-21!75;UBERON:0001017!9.40e-21!73;UBERON:0005743!9.40e-21!73;UBERON:0004121!1.05e-19!102;UBERON:0000924!1.05e-19!102;UBERON:0006601!1.05e-19!102;UBERON:0002346!4.92e-15!71;UBERON:0003075!4.92e-15!71;UBERON:0007284!4.92e-15!71;UBERON:0001049!6.30e-14!52;UBERON:0005068!6.30e-14!52;UBERON:0006241!6.30e-14!52;UBERON:0007135!6.30e-14!52;UBERON:0003056!1.36e-13!49;UBERON:0000033!1.38e-13!63;UBERON:0002020!9.17e-13!34;UBERON:0003080!1.24e-11!40;UBERON:0002616!1.67e-11!49;UBERON:0000955!1.87e-11!50;UBERON:0006238!1.87e-11!50;UBERON:0002780!2.07e-11!39;UBERON:0001890!2.07e-11!39;UBERON:0006240!2.07e-11!39;UBERON:0002791!4.59e-10!29;UBERON:0003528!4.59e-10!29;UBERON:0001893!4.59e-10!29;UBERON:0000153!3.07e-08!94;UBERON:0000956!8.14e-08!21;UBERON:0001869!8.14e-08!21;UBERON:0000203!8.14e-08!21;UBERON:0000468!1.92e-07!333;UBERON:0007811!4.71e-07!86 | |ontology_enrichment_uberon=UBERON:0000073!1.74e-21!75;UBERON:0001016!1.74e-21!75;UBERON:0001017!9.40e-21!73;UBERON:0005743!9.40e-21!73;UBERON:0004121!1.05e-19!102;UBERON:0000924!1.05e-19!102;UBERON:0006601!1.05e-19!102;UBERON:0002346!4.92e-15!71;UBERON:0003075!4.92e-15!71;UBERON:0007284!4.92e-15!71;UBERON:0001049!6.30e-14!52;UBERON:0005068!6.30e-14!52;UBERON:0006241!6.30e-14!52;UBERON:0007135!6.30e-14!52;UBERON:0003056!1.36e-13!49;UBERON:0000033!1.38e-13!63;UBERON:0002020!9.17e-13!34;UBERON:0003080!1.24e-11!40;UBERON:0002616!1.67e-11!49;UBERON:0000955!1.87e-11!50;UBERON:0006238!1.87e-11!50;UBERON:0002780!2.07e-11!39;UBERON:0001890!2.07e-11!39;UBERON:0006240!2.07e-11!39;UBERON:0002791!4.59e-10!29;UBERON:0003528!4.59e-10!29;UBERON:0001893!4.59e-10!29;UBERON:0000153!3.07e-08!94;UBERON:0000956!8.14e-08!21;UBERON:0001869!8.14e-08!21;UBERON:0000203!8.14e-08!21;UBERON:0000468!1.92e-07!333;UBERON:0007811!4.71e-07!86 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,8.94e-22,95;UBERON:0000924,8.94e-22,95;UBERON:0006601,8.94e-22,95;UBERON:0001016,9.95e-22,75;UBERON:0001017,5.61e-21,73;UBERON:0002346,4.41e-17,64;UBERON:0003075,4.41e-17,64;UBERON:0007284,4.41e-17,64;UBERON:0010314,5.93e-17,92;UBERON:0010371,1.86e-15,73;UBERON:0000073,3.62e-14,54;UBERON:0001049,5.68e-14,52;UBERON:0005068,5.68e-14,52;UBERON:0006241,5.68e-14,52;UBERON:0007135,5.68e-14,52;UBERON:0003056,1.32e-13,49;UBERON:0002020,4.20e-13,34;UBERON:0003080,8.61e-12,40;UBERON:0002780,1.45e-11,39;UBERON:0001890,1.45e-11,39;UBERON:0006240,1.45e-11,39;UBERON:0002616,5.79e-11,46;UBERON:0000955,6.49e-11,47;UBERON:0006238,6.49e-11,47;UBERON:0003528,2.54e-10,29;UBERON:0002791,2.54e-10,29;UBERON:0001893,2.54e-10,29;UBERON:0000956,5.26e-08,21;UBERON:0001869,5.26e-08,21;UBERON:0000203,5.26e-08,21 | |||
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| ||
|short_description=p4@Gpc1 | |short_description=p4@Gpc1 | ||
}} | }} |
Latest revision as of 19:37, 1 October 2015
Short description: | p4@Gpc1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Gpc1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -269bp_to_ENSMUST00000045970_5end |
EntrezGene: | Gpc1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.26e-15 | 44 |
neurectodermal cell | 1.26e-15 | 44 |
neural cell | 1.38e-15 | 43 |
neuron | 2.95e-15 | 33 |
neuronal stem cell | 2.95e-15 | 33 |
neuroblast | 2.95e-15 | 33 |
electrically signaling cell | 2.95e-15 | 33 |
CNS neuron (sensu Vertebrata) | 5.57e-12 | 23 |
neuroblast (sensu Vertebrata) | 5.57e-12 | 23 |
electrically responsive cell | 9.00e-12 | 39 |
electrically active cell | 9.00e-12 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 8.94e-22 | 95 |
ectoderm | 8.94e-22 | 95 |
presumptive ectoderm | 8.94e-22 | 95 |
nervous system | 9.95e-22 | 75 |
central nervous system | 5.61e-21 | 73 |
neurectoderm | 4.41e-17 | 64 |
neural plate | 4.41e-17 | 64 |
presumptive neural plate | 4.41e-17 | 64 |
structure with developmental contribution from neural crest | 5.93e-17 | 92 |
ecto-epithelium | 1.86e-15 | 73 |
regional part of nervous system | 3.62e-14 | 54 |
neural tube | 5.68e-14 | 52 |
neural rod | 5.68e-14 | 52 |
future spinal cord | 5.68e-14 | 52 |
neural keel | 5.68e-14 | 52 |
pre-chordal neural plate | 1.32e-13 | 49 |
gray matter | 4.20e-13 | 34 |
anterior neural tube | 8.61e-12 | 40 |
regional part of forebrain | 1.45e-11 | 39 |
forebrain | 1.45e-11 | 39 |
future forebrain | 1.45e-11 | 39 |
regional part of brain | 5.79e-11 | 46 |
brain | 6.49e-11 | 47 |
future brain | 6.49e-11 | 47 |
brain grey matter | 2.54e-10 | 29 |
regional part of telencephalon | 2.54e-10 | 29 |
telencephalon | 2.54e-10 | 29 |
cerebral cortex | 5.26e-08 | 21 |
cerebral hemisphere | 5.26e-08 | 21 |
pallium | 5.26e-08 | 21 |