FFCP PHASE1:Mm9::chr5:122499831..122499891,-: Difference between revisions
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{{FFCP|EntrezGene=13048|HGNC=|MCL_coexpression_id=1|UniProt=P70298|association_with_transcript=0bp_to_ENSMUST00000111752_5end|description=CAGE_peak_1_at_Cux2_5end|id=chr5:122499831..122499891,-|ontology_enrichment_celltype=CL:0000540!1.52e-15!33;CL:0000047!1.52e-15!33;CL:0000031!1.52e-15!33;CL:0000404!1.52e-15!33;CL:0000117!1.78e-13!23;CL:0000337!1.78e-13!23;CL:0000221!3.37e-11!44;CL:0000133!3.37e-11!44;CL:0002319!6.63e-11!43;CL:0000393!3.32e-10!39;CL:0000211!3.32e-10!39;CL:0000055!7.16e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,3.67e-18,33;CL:0000047,3.67e-18,33;CL:0000031,3.67e-18,33;CL:0000404,3.67e-18,33;CL:0000117,2.19e-16,23;CL:0000337,2.19e-16,23;CL:0000393,2.53e-13,39;CL:0000211,2.53e-13,39;CL:0000221,5.02e-12,44;CL:0000133,5.02e-12,44;CL:0002319,1.14e-11,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.31e-28!73;UBERON:0005743!1.31e-28!73;UBERON:0000073!4.15e-27!75;UBERON:0001016!4.15e-27!75;UBERON:0002346!3.96e-26!71;UBERON:0003075!3.96e-26!71;UBERON:0007284!3.96e-26!71;UBERON:0004121!2.13e-24!102;UBERON:0000924!2.13e-24!102;UBERON:0006601!2.13e-24!102;UBERON:0000033!4.98e-23!63;UBERON:0001049!1.50e-22!52;UBERON:0005068!1.50e-22!52;UBERON:0006241!1.50e-22!52;UBERON:0007135!1.50e-22!52;UBERON:0000955!1.66e-21!50;UBERON:0006238!1.66e-21!50;UBERON:0002616!6.48e-21!49;UBERON:0003056!3.08e-20!49;UBERON:0002020!1.08e-18!34;UBERON:0003080!4.24e-18!40;UBERON:0002780!2.05e-17!39;UBERON:0001890!2.05e-17!39;UBERON:0006240!2.05e-17!39;UBERON:0002791!4.11e-16!29;UBERON:0003528!4.11e-16!29;UBERON:0001893!4.11e-16!29;UBERON:0000956!8.13e-12!21;UBERON:0001869!8.13e-12!21;UBERON:0000203!8.13e-12!21;UBERON:0007811!5.04e-10!86;UBERON:0002619!1.52e-09!17;UBERON:0002021!1.62e-08!10;UBERON:0000411!1.62e-08!10;UBERON:0001950!1.62e-08!10;UBERON:0000468!5.38e-08!333;UBERON:0000153!1.82e-07!94;UBERON:0004111!1.97e-07!122;UBERON:0000025!3.00e-07!114;UBERON:0000922!9.44e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.27e-31,73;UBERON:0001016,1.54e-29,75;UBERON:0002346,1.54e-27,64;UBERON:0003075,1.54e-27,64;UBERON:0007284,1.54e-27,64;UBERON:0000073,1.47e-26,54;UBERON:0004121,2.81e-26,95;UBERON:0000924,2.81e-26,95;UBERON:0006601,2.81e-26,95;UBERON:0001049,3.57e-25,52;UBERON:0005068,3.57e-25,52;UBERON:0006241,3.57e-25,52;UBERON:0007135,3.57e-25,52;UBERON:0010314,5.72e-24,92;UBERON:0010371,2.83e-23,73;UBERON:0002020,3.78e-22,34;UBERON:0000955,9.17e-22,47;UBERON:0006238,9.17e-22,47;UBERON:0003056,1.17e-21,49;UBERON:0002616,4.65e-21,46;UBERON:0003080,1.47e-19,40;UBERON:0003528,6.12e-19,29;UBERON:0002791,6.12e-19,29;UBERON:0001893,6.12e-19,29;UBERON:0002780,9.82e-19,39;UBERON:0001890,9.82e-19,39;UBERON:0006240,9.82e-19,39;UBERON:0000956,1.31e-13,21;UBERON:0001869,1.31e-13,21;UBERON:0000203,1.31e-13,21;UBERON:0002619,8.38e-11,17;UBERON:0002021,3.21e-10,10;UBERON:0000411,3.21e-10,10;UBERON:0001950,3.21e-10,10|phase1_expression=1.92178616525753,0,0,0,0,0,0,0,0,0,0,0.0797721589953364,0,0,0,0,0,0,0,0,4.16712121740242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0.219686182734472,0.388859798148567,0,1.43752564364972,0,0,0,0,0,0,10.3181395038395,8.46385566835253,10.775133859605,0,0,0,0,0,0.599200221036809,0.768436610643109,10.1615820062308,9.99043943654511,7.36137364729837,7.7125765789027,7.73039893330647,9.30930074033651,6.80502844229478,14.7075005857603,3.30347642998166,12.7687338085188,11.6740965274745,9.36392642884376,7.22752384459036,6.25096044668112,12.5632349550621,11.2552522006336,9.32069311438542,5.00868595305235,6.54909731675874,7.82877672466262,0.151452386666368,0,0.289864488701678,0,0,0,0,0,0.983110940922263,0,0,0,2.11265129665021,0,0,0,0,0,0,0.68510327831436,0,6.23456984072264,0.693941307064543,0.913396434936424,0.461230994512117,1.3565037649736,1.05829836422134,3.01599819191221,0,0.144599356919912,0,0,0,0,0,16.9812862266697,12.9856958224342,0,0,0,0,17.3757141709594,7.77751024791665,5.02617408451458,19.8159725019195,21.9915293304084,13.5062228963714,13.7905073607594,0.407357455401265,0.373220911830279,0.505445516867349,3.78795340595653,1.43132487258974,1.14951052216736,0.720248519221397,1.20563854268572,2.85753296435577,2.8185018462667,2.81105173679186,7.76110112217047,0,0,0.351902248327898,0.43839146485515,0,0,0,0.796137067273973,0,0,0,0.828503090142008,0.938104239924385,1.08037236876609,1.89395788468168,1.18058539048442,0.617068451549513,1.62773761325285,0,0.467061369468678,1.15191894939436,0.656669856316381,1.4592385718254,4.5321996101853,3.07370161407471,1.74468344388483,3.57492912559016,5.35103984372279,0.330418782983798,0,2.98603550749328,1.62565670302307,0.902072229254653,1.81515172161008,1.11189021922435,0.760902504450237,0,0.988193728344065,0.502670417600539,1.1937388322469,0.779856348476481,1.79763881730844,0,0.398282546508734,1.51734320762465,1.02823661348756,1.1270773567308,1.62921062276251,2.13347735884388,2.24434623649019,2.46622494784603,1.03327103585722,1.255989822731,1.1105744752962,0,0.50053531714828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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=13048 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=P70298 | |||
|association_with_transcript=0bp_to_ENSMUST00000111752_5end | |||
|cluster_id=chr5:122499831..122499891,- | |||
|description=CAGE_peak_1_at_Cux2_5end | |||
|id=chr5:122499831..122499891,- | |||
|ontology_enrichment_celltype=CL:0000540!1.52e-15!33;CL:0000047!1.52e-15!33;CL:0000031!1.52e-15!33;CL:0000404!1.52e-15!33;CL:0000117!1.78e-13!23;CL:0000337!1.78e-13!23;CL:0000221!3.37e-11!44;CL:0000133!3.37e-11!44;CL:0002319!6.63e-11!43;CL:0000393!3.32e-10!39;CL:0000211!3.32e-10!39;CL:0000055!7.16e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.67e-18,33;CL:0000047,3.67e-18,33;CL:0000031,3.67e-18,33;CL:0000404,3.67e-18,33;CL:0000117,2.19e-16,23;CL:0000337,2.19e-16,23;CL:0000393,2.53e-13,39;CL:0000211,2.53e-13,39;CL:0000221,5.02e-12,44;CL:0000133,5.02e-12,44;CL:0002319,1.14e-11,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.31e-28!73;UBERON:0005743!1.31e-28!73;UBERON:0000073!4.15e-27!75;UBERON:0001016!4.15e-27!75;UBERON:0002346!3.96e-26!71;UBERON:0003075!3.96e-26!71;UBERON:0007284!3.96e-26!71;UBERON:0004121!2.13e-24!102;UBERON:0000924!2.13e-24!102;UBERON:0006601!2.13e-24!102;UBERON:0000033!4.98e-23!63;UBERON:0001049!1.50e-22!52;UBERON:0005068!1.50e-22!52;UBERON:0006241!1.50e-22!52;UBERON:0007135!1.50e-22!52;UBERON:0000955!1.66e-21!50;UBERON:0006238!1.66e-21!50;UBERON:0002616!6.48e-21!49;UBERON:0003056!3.08e-20!49;UBERON:0002020!1.08e-18!34;UBERON:0003080!4.24e-18!40;UBERON:0002780!2.05e-17!39;UBERON:0001890!2.05e-17!39;UBERON:0006240!2.05e-17!39;UBERON:0002791!4.11e-16!29;UBERON:0003528!4.11e-16!29;UBERON:0001893!4.11e-16!29;UBERON:0000956!8.13e-12!21;UBERON:0001869!8.13e-12!21;UBERON:0000203!8.13e-12!21;UBERON:0007811!5.04e-10!86;UBERON:0002619!1.52e-09!17;UBERON:0002021!1.62e-08!10;UBERON:0000411!1.62e-08!10;UBERON:0001950!1.62e-08!10;UBERON:0000468!5.38e-08!333;UBERON:0000153!1.82e-07!94;UBERON:0004111!1.97e-07!122;UBERON:0000025!3.00e-07!114;UBERON:0000922!9.44e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.27e-31,73;UBERON:0001016,1.54e-29,75;UBERON:0002346,1.54e-27,64;UBERON:0003075,1.54e-27,64;UBERON:0007284,1.54e-27,64;UBERON:0000073,1.47e-26,54;UBERON:0004121,2.81e-26,95;UBERON:0000924,2.81e-26,95;UBERON:0006601,2.81e-26,95;UBERON:0001049,3.57e-25,52;UBERON:0005068,3.57e-25,52;UBERON:0006241,3.57e-25,52;UBERON:0007135,3.57e-25,52;UBERON:0010314,5.72e-24,92;UBERON:0010371,2.83e-23,73;UBERON:0002020,3.78e-22,34;UBERON:0000955,9.17e-22,47;UBERON:0006238,9.17e-22,47;UBERON:0003056,1.17e-21,49;UBERON:0002616,4.65e-21,46;UBERON:0003080,1.47e-19,40;UBERON:0003528,6.12e-19,29;UBERON:0002791,6.12e-19,29;UBERON:0001893,6.12e-19,29;UBERON:0002780,9.82e-19,39;UBERON:0001890,9.82e-19,39;UBERON:0006240,9.82e-19,39;UBERON:0000956,1.31e-13,21;UBERON:0001869,1.31e-13,21;UBERON:0000203,1.31e-13,21;UBERON:0002619,8.38e-11,17;UBERON:0002021,3.21e-10,10;UBERON:0000411,3.21e-10,10;UBERON:0001950,3.21e-10,10 | |||
|phase1_expression=1.92178616525753,0,0,0,0,0,0,0,0,0,0,0.0797721589953364,0,0,0,0,0,0,0,0,4.16712121740242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0.219686182734472,0.388859798148567,0,1.43752564364972,0,0,0,0,0,0,10.3181395038395,8.46385566835253,10.775133859605,0,0,0,0,0,0.599200221036809,0.768436610643109,10.1615820062308,9.99043943654511,7.36137364729837,7.7125765789027,7.73039893330647,9.30930074033651,6.80502844229478,14.7075005857603,3.30347642998166,12.7687338085188,11.6740965274745,9.36392642884376,7.22752384459036,6.25096044668112,12.5632349550621,11.2552522006336,9.32069311438542,5.00868595305235,6.54909731675874,7.82877672466262,0.151452386666368,0,0.289864488701678,0,0,0,0,0,0.983110940922263,0,0,0,2.11265129665021,0,0,0,0,0,0,0.68510327831436,0,6.23456984072264,0.693941307064543,0.913396434936424,0.461230994512117,1.3565037649736,1.05829836422134,3.01599819191221,0,0.144599356919912,0,0,0,0,0,16.9812862266697,12.9856958224342,0,0,0,0,17.3757141709594,7.77751024791665,5.02617408451458,19.8159725019195,21.9915293304084,13.5062228963714,13.7905073607594,0.407357455401265,0.373220911830279,0.505445516867349,3.78795340595653,1.43132487258974,1.14951052216736,0.720248519221397,1.20563854268572,2.85753296435577,2.8185018462667,2.81105173679186,7.76110112217047,0,0,0.351902248327898,0.43839146485515,0,0,0,0.796137067273973,0,0,0,0.828503090142008,0.938104239924385,1.08037236876609,1.89395788468168,1.18058539048442,0.617068451549513,1.62773761325285,0,0.467061369468678,1.15191894939436,0.656669856316381,1.4592385718254,4.5321996101853,3.07370161407471,1.74468344388483,3.57492912559016,5.35103984372279,0.330418782983798,0,2.98603550749328,1.62565670302307,0.902072229254653,1.81515172161008,1.11189021922435,0.760902504450237,0,0.988193728344065,0.502670417600539,1.1937388322469,0.779856348476481,1.79763881730844,0,0.398282546508734,1.51734320762465,1.02823661348756,1.1270773567308,1.62921062276251,2.13347735884388,2.24434623649019,2.46622494784603,1.03327103585722,1.255989822731,1.1105744752962,0,0.500535317148282,0,0.224862112384854,0,0,0,0.287696137450811,0.162135226775035,0.274561413188081,0,0,0,0,0,0,2.21703828199926,0.37898282354097,0.488894929326078,0.848725428875941,0,0.502518772325447,0.238043640886014,0.195133647857799,0.315270288212382,0.44292937929755,0.478364305972461,0.163863314715738,0.690739927463582,0.433947175744535,0,0,0,0,13.9679013289379,15.003095883802,0,0.252470927204373,0.94652465824877,2.34263246577983,1.93881057959519,1.19484398976276,2.45078541490634,1.98153571552183,2.83367491172426,2.04579100537918,3.16230222357219,8.9969968598106,0.709700426041343,0.890328018336276,1.46598263418218,1.64970122972535,0,1.21390318077491,0.604647113929502,0.188605079755898,0,0.922305443831782,0,0.727067458955011,2.13898427030833,0.948110273807448,3.16255825724996,1.03135543248187,4.42571487479924,0.900305470156551,1.4229455216103,1.71469628025274,1.77340233642274,1.24858172321449,0.658196082408484,0.608929898229199,0,0,0.220528398054962,0.16488625294148,0,0.0603129249281559,0,0,0.291480836629851,12.6089205367147,0.341741761595705,0,0.370389054739423,0,0.136694227721025,0,0,0,0,0.954670618015114,0.949007980743406,1.21991680276109,1.29606408986162,0.418176592028937,0.655087691238533,1.07891477107857,0.826534557253359,0.785267825952089,0.518459893167171,0,0,0.598066184175915,0.330916980914195,0.388902376688095,0.516639293910924,0.675824501963113,0.469428954583016,0.781226309063701,1.8874681996628,0,0.288030006257865,0,0.405450430580328,0.205421914329655,0.25984164595559,0.179026695667481,0,0.120195449519969,0,0,0,0,0,0,0,0.226730383615211,0.443971906748129,0.269141569828427,0,2.51146472241848,0,0.183151624267265,0,5.517293144389,23.1548255472997,20.714635642823,25.7802981047728,22.3409137046794,23.9778881919725,41.5466643564335,27.675922509504,24.7676661773321,26.7354021300681,34.1721805756201,1.14166082342594,3.19219898720825,3.07320490357441,1.21553358534147,2.30574478890781,1.83843508450014,0.666740183404846,1.64828045791115,1.92551525755089,1.51618327058278,2.02783439912192,2.64076877940507,1.96647165686753,2.30490548657529,1.37845125493472,0.952587382566147,0.695305955669133,1.15745532278223,2.06042950401653,2.50238164228475,2.05721551431249,1.4198064492747,1.90748951957857,1.0174249164263,1.41164070622996,1.86152137361688,1.09756783723664,1.31534855718921,1.49384525230448,1.12228454331548,0.949080144993393,1.18205378850676,2.45538625901814,1.85924209423159,1.73615949883027,4.49659040288303,0.701794825336225,1.71896843238639,0.191288332068843,0,0.463735671240843 | |||
|short_description=p1@Cux2 | |||
}} |
Latest revision as of 19:44, 1 October 2015
Short description: | p1@Cux2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Cux2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000111752_5end |
EntrezGene: | Cux2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.67e-18 | 33 |
neuronal stem cell | 3.67e-18 | 33 |
neuroblast | 3.67e-18 | 33 |
electrically signaling cell | 3.67e-18 | 33 |
CNS neuron (sensu Vertebrata) | 2.19e-16 | 23 |
neuroblast (sensu Vertebrata) | 2.19e-16 | 23 |
electrically responsive cell | 2.53e-13 | 39 |
electrically active cell | 2.53e-13 | 39 |
ectodermal cell | 5.02e-12 | 44 |
neurectodermal cell | 5.02e-12 | 44 |
neural cell | 1.14e-11 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.27e-31 | 73 |
nervous system | 1.54e-29 | 75 |
neurectoderm | 1.54e-27 | 64 |
neural plate | 1.54e-27 | 64 |
presumptive neural plate | 1.54e-27 | 64 |
regional part of nervous system | 1.47e-26 | 54 |
ectoderm-derived structure | 2.81e-26 | 95 |
ectoderm | 2.81e-26 | 95 |
presumptive ectoderm | 2.81e-26 | 95 |
neural tube | 3.57e-25 | 52 |
neural rod | 3.57e-25 | 52 |
future spinal cord | 3.57e-25 | 52 |
neural keel | 3.57e-25 | 52 |
structure with developmental contribution from neural crest | 5.72e-24 | 92 |
ecto-epithelium | 2.83e-23 | 73 |
gray matter | 3.78e-22 | 34 |
brain | 9.17e-22 | 47 |
future brain | 9.17e-22 | 47 |
pre-chordal neural plate | 1.17e-21 | 49 |
regional part of brain | 4.65e-21 | 46 |
anterior neural tube | 1.47e-19 | 40 |
brain grey matter | 6.12e-19 | 29 |
regional part of telencephalon | 6.12e-19 | 29 |
telencephalon | 6.12e-19 | 29 |
regional part of forebrain | 9.82e-19 | 39 |
forebrain | 9.82e-19 | 39 |
future forebrain | 9.82e-19 | 39 |
cerebral cortex | 1.31e-13 | 21 |
cerebral hemisphere | 1.31e-13 | 21 |
pallium | 1.31e-13 | 21 |
regional part of cerebral cortex | 8.38e-11 | 17 |
occipital lobe | 3.21e-10 | 10 |
visual cortex | 3.21e-10 | 10 |
neocortex | 3.21e-10 | 10 |