FFCP PHASE1:Mm9::chr11:68666621..68666642,-: Difference between revisions
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{{FFCP|EntrezGene=83431|HGNC=|MCL_coexpression_id=1982|UniProt=Q9ERR1|association_with_transcript=0bp_to_ENSMUST00000018880,NM_023668,uc007joc.2,uc007jod.2,uc007joe.2_5end|description=CAGE_peak_2_at_Ndel1_5end|id=chr11:68666621..68666642,-|ontology_enrichment_celltype=CL:0000117!6.25e-07!23;CL:0000337!6.25e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,6.25e-07,23;CL:0000337,6.25e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.82e-12!63;UBERON:0001049!2.98e-12!52;UBERON:0005068!2.98e-12!52;UBERON:0006241!2.98e-12!52;UBERON:0007135!2.98e-12!52;UBERON:0000955!9.35e-12!50;UBERON:0006238!9.35e-12!50;UBERON:0002616!2.61e-11!49;UBERON:0004121!5.55e-11!102;UBERON:0000924!5.55e-11!102;UBERON:0006601!5.55e-11!102;UBERON:0002020!1.05e-10!34;UBERON:0001017!2.62e-10!73;UBERON:0005743!2.62e-10!73;UBERON:0000073!2.86e-10!75;UBERON:0001016!2.86e-10!75;UBERON:0003080!2.54e-09!40;UBERON:0002346!3.34e-09!71;UBERON:0003075!3.34e-09!71;UBERON:0007284!3.34e-09!71;UBERON:0003056!5.88e-09!49;UBERON:0002780!8.58e-09!39;UBERON:0001890!8.58e-09!39;UBERON:0006240!8.58e-09!39;UBERON:0002791!8.92e-09!29;UBERON:0003528!8.92e-09!29;UBERON:0001893!8.92e-09!29;UBERON:0002021!1.71e-07!10;UBERON:0000411!1.71e-07!10;UBERON:0001950!1.71e-07!10;UBERON:0007811!2.51e-07!86;UBERON:0000153!4.82e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.86e-13,54;UBERON:0001049,3.08e-12,52;UBERON:0005068,3.08e-12,52;UBERON:0006241,3.08e-12,52;UBERON:0007135,3.08e-12,52;UBERON:0004121,5.29e-12,95;UBERON:0000924,5.29e-12,95;UBERON:0006601,5.29e-12,95;UBERON:0010371,1.61e-11,73;UBERON:0002020,1.05e-10,34;UBERON:0002346,1.85e-10,64;UBERON:0003075,1.85e-10,64;UBERON:0007284,1.85e-10,64;UBERON:0001017,2.69e-10,73;UBERON:0001016,2.93e-10,75;UBERON:0000955,3.61e-10,47;UBERON:0006238,3.61e-10,47;UBERON:0002616,9.65e-10,46;UBERON:0003080,2.54e-09,40;UBERON:0003056,5.88e-09,49;UBERON:0010314,7.32e-09,92;UBERON:0002780,8.57e-09,39;UBERON:0001890,8.57e-09,39;UBERON:0006240,8.57e-09,39;UBERON:0003528,8.91e-09,29;UBERON:0002791,8.91e-09,29;UBERON:0001893,8.91e-09,29;UBERON:0002021,1.71e-07,10;UBERON:0000411,1.71e-07,10;UBERON:0001950,1.71e-07,10|phase1_expression=8.0074423552397,4.18770489167233,5.45999087267443,1.81478526784098,5.00895729946347,4.53274034162102,2.33612640595526,1.93684985162364,5.06839399746,6.78787126333781,2.22583358693156,3.43020283679947,2.22560948910567,2.18551006047494,5.99597571268193,5.66930748691513,4.89693314689703,2.20823515750766,2.33094537129756,1.69755860719212,6.80346321208558,2.18440092641948,1.56719873483361,0.639969691173627,1.37645568640302,4.59385571292016,1.29228598847722,1.50829862880122,1.14014051673824,2.01624103807945,1.33038306393183,0.635030673459631,0,0,2.02196133825892,2.32728503501889,1.42918549383658,8.37063261473815,7.813353445238,5.75876118371178,7.05877785637217,5.46436387966757,4.36959317728038,3.52511090331616,4.66333883609767,2.38610777810186,0.782391344348039,2.61630187656536,3.51497892375155,2.3331587888914,1.67983705950435,2.87505128729943,2.51673909086605,2.17608642603403,2.35265659399725,2.82985379639542,2.86533439938757,2.06268836910977,7.89034197352431,8.46385566835253,8.23980824558033,2.03306719241479,0,3.1496490104849,0,2.1314403448383,2.09720077362883,1.92109152660777,3.52544681848824,4.3201900266141,6.30974884054146,8.85518051651791,5.52171352379034,3.06226998037385,3.54628242767475,2.75765635983006,12.1127469099328,9.57655035638908,14.2854075928306,5.27545150920775,4.11694396210843,5.73004707612436,9.77140496504833,8.4414391504752,10.3902808488231,6.18720029494702,6.83384067835694,6.71038004971082,3.86203585999239,3.85414956544606,4.34796733052517,0.860423876981386,4.0798280022465,2.69851595818909,3.24888208723835,1.34408066129201,2.52799956237153,1.87473354835864,3.11743205523443,2.47337702157238,4.3661460130771,1.28326477414318,10.1922095882658,42.6640021891999,1.29894624606728,1.01343946190039,1.51657333504435,4.45317130904334,2.58937883647172,3.41416919849097,3.46970653532272,2.13125834818499,3.68984795609694,3.3158980921577,3.52766121407114,3.51866455723091,6.92145909656247,4.04878199375753,3.5384422077995,4.85300549842228,4.63767188766826,5.81850303762267,1.86391761218122,6.14839673724249,5.65506108396329,1.53274233125155,2.75574786363617,0.599902730993408,3.55796635804581,12.7322043494099,12.3525162761029,6.15706325353036,15.8180131374972,12.0186264945255,10.5971902725376,12.6548185192851,4.07357455401265,5.10068579501381,4.0435641349388,4.8401626853889,3.513251959993,3.21862946206862,2.34080768746954,3.61691562805716,3.81004395247436,4.99643509110914,4.31027932974753,6.98499100995342,0.862271971731369,4.34943984385984,4.92663147659057,3.94552318369635,3.89266148915837,3.83077383174383,4.52720700097476,3.78165106955137,2.1066395619397,0.772043721344145,1.98914449576915,2.89976081549703,3.98694301967864,3.6012412292203,3.78791576936336,4.9191057936851,3.85667782218446,3.95307706075693,2.14618721119695,5.02090972178829,4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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=83431 | |||
|HGNC= | |||
|MCL_coexpression_id=1982 | |||
|TSSclassifier=NA | |||
|UniProt=Q9ERR1 | |||
|association_with_transcript=0bp_to_ENSMUST00000018880,NM_023668,uc007joc.2,uc007jod.2,uc007joe.2_5end | |||
|cluster_id=chr11:68666621..68666642,- | |||
|description=CAGE_peak_2_at_Ndel1_5end | |||
|id=chr11:68666621..68666642,- | |||
|ontology_enrichment_celltype=CL:0000117!6.25e-07!23;CL:0000337!6.25e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.25e-07,23;CL:0000337,6.25e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.82e-12!63;UBERON:0001049!2.98e-12!52;UBERON:0005068!2.98e-12!52;UBERON:0006241!2.98e-12!52;UBERON:0007135!2.98e-12!52;UBERON:0000955!9.35e-12!50;UBERON:0006238!9.35e-12!50;UBERON:0002616!2.61e-11!49;UBERON:0004121!5.55e-11!102;UBERON:0000924!5.55e-11!102;UBERON:0006601!5.55e-11!102;UBERON:0002020!1.05e-10!34;UBERON:0001017!2.62e-10!73;UBERON:0005743!2.62e-10!73;UBERON:0000073!2.86e-10!75;UBERON:0001016!2.86e-10!75;UBERON:0003080!2.54e-09!40;UBERON:0002346!3.34e-09!71;UBERON:0003075!3.34e-09!71;UBERON:0007284!3.34e-09!71;UBERON:0003056!5.88e-09!49;UBERON:0002780!8.58e-09!39;UBERON:0001890!8.58e-09!39;UBERON:0006240!8.58e-09!39;UBERON:0002791!8.92e-09!29;UBERON:0003528!8.92e-09!29;UBERON:0001893!8.92e-09!29;UBERON:0002021!1.71e-07!10;UBERON:0000411!1.71e-07!10;UBERON:0001950!1.71e-07!10;UBERON:0007811!2.51e-07!86;UBERON:0000153!4.82e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.86e-13,54;UBERON:0001049,3.08e-12,52;UBERON:0005068,3.08e-12,52;UBERON:0006241,3.08e-12,52;UBERON:0007135,3.08e-12,52;UBERON:0004121,5.29e-12,95;UBERON:0000924,5.29e-12,95;UBERON:0006601,5.29e-12,95;UBERON:0010371,1.61e-11,73;UBERON:0002020,1.05e-10,34;UBERON:0002346,1.85e-10,64;UBERON:0003075,1.85e-10,64;UBERON:0007284,1.85e-10,64;UBERON:0001017,2.69e-10,73;UBERON:0001016,2.93e-10,75;UBERON:0000955,3.61e-10,47;UBERON:0006238,3.61e-10,47;UBERON:0002616,9.65e-10,46;UBERON:0003080,2.54e-09,40;UBERON:0003056,5.88e-09,49;UBERON:0010314,7.32e-09,92;UBERON:0002780,8.57e-09,39;UBERON:0001890,8.57e-09,39;UBERON:0006240,8.57e-09,39;UBERON:0003528,8.91e-09,29;UBERON:0002791,8.91e-09,29;UBERON:0001893,8.91e-09,29;UBERON:0002021,1.71e-07,10;UBERON:0000411,1.71e-07,10;UBERON:0001950,1.71e-07,10 | |||
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| |||
|short_description=p2@Ndel1 | |||
}} |
Latest revision as of 23:28, 1 October 2015
Short description: | p2@Ndel1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Ndel1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1982 |
Association with transcript: | 0bp_to_ENSMUST00000018880, NM_023668, uc007joc.2, uc007jod.2, uc007joe.2_5end |
EntrezGene: | Ndel1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.25e-07 | 23 |
neuroblast (sensu Vertebrata) | 6.25e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.86e-13 | 54 |
neural tube | 3.08e-12 | 52 |
neural rod | 3.08e-12 | 52 |
future spinal cord | 3.08e-12 | 52 |
neural keel | 3.08e-12 | 52 |
ectoderm-derived structure | 5.29e-12 | 95 |
ectoderm | 5.29e-12 | 95 |
presumptive ectoderm | 5.29e-12 | 95 |
ecto-epithelium | 1.61e-11 | 73 |
gray matter | 1.05e-10 | 34 |
neurectoderm | 1.85e-10 | 64 |
neural plate | 1.85e-10 | 64 |
presumptive neural plate | 1.85e-10 | 64 |
central nervous system | 2.69e-10 | 73 |
nervous system | 2.93e-10 | 75 |
brain | 3.61e-10 | 47 |
future brain | 3.61e-10 | 47 |
regional part of brain | 9.65e-10 | 46 |
anterior neural tube | 2.54e-09 | 40 |
pre-chordal neural plate | 5.88e-09 | 49 |
structure with developmental contribution from neural crest | 7.32e-09 | 92 |
regional part of forebrain | 8.57e-09 | 39 |
forebrain | 8.57e-09 | 39 |
future forebrain | 8.57e-09 | 39 |
brain grey matter | 8.91e-09 | 29 |
regional part of telencephalon | 8.91e-09 | 29 |
telencephalon | 8.91e-09 | 29 |
occipital lobe | 1.71e-07 | 10 |
visual cortex | 1.71e-07 | 10 |
neocortex | 1.71e-07 | 10 |