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{{CL
{{CL
|id=CL:0002564
|alt_id=
|name=nucleus pulposus cell of intervertebral disc
|namespace=cell
|def="A connective tissue cell of the nucleus pulposus cell of intervertebral disc." [GOC:tfm]
|xref=
|is_a=CL:0002320;;UBERON:0002384
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-02T02:12:23Z
|def="A connective tissue cell of the nucleus pulposus cell of intervertebral disc." [GOC:tfm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002564
|is_a=CL:0002320
|is_obsolete=
|located_in=
|located_in=
|name=nucleus pulposus cell of intervertebral disc
|namespace=FANTOM
|obo_creation_date=2011-03-02T02:12:23Z
|part_of=UBERON:0002242
|part_of=UBERON:0002242
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|subset=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:44, 12 September 2014

Name:nucleus pulposus cell of intervertebral disc
Namespace:FANTOM
Definition:"A connective tissue cell of the nucleus pulposus cell of intervertebral disc." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-02T02:12:23Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002320(connective tissue cell)
part_of:UBERON:0002242(nucleus pulposus)



Children


derives from:FF:0000123 (human nucleus pulposus cell of intervertebral disc sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002564 (nucleus pulposus cell of intervertebral disc), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.26e-98FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_4459c2cc496256c23f81ffc0b9538aedp@chr3:174737010..174737023, +
8.26e-98FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_4459c2cc496256c23f81ffc0b9538aedp@chr3:174737010..174737023, +
3.03e-84FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_c70d19699c3a83da2d8c88baf4806f8ap4@PAX1
3.03e-84FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_c70d19699c3a83da2d8c88baf4806f8ap4@PAX1
2.39e-66FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_c71c3ead3b294735246ab8db4370d34dp@chr9:33028063..33028067, -
2.39e-66FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_c71c3ead3b294735246ab8db4370d34dp@chr9:33028063..33028067, -
5.46e-60FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_9535d8bdf01864c8a479c36d289f72a2p@chr5:30104176..30104187, -
5.46e-60FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_9535d8bdf01864c8a479c36d289f72a2p@chr5:30104176..30104187, -
9.77e-45FFCP PHASE2:Hg19::chr2:241987807..241987808,+#_16dc4aa7aeec31f71cde6ec5a452f9b6p22@SNED1
9.77e-45FFCP PHASE1:Hg19::chr2:241987807..241987808,+#_16dc4aa7aeec31f71cde6ec5a452f9b6p22@SNED1
6.64e-41FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_b2609e69c601e0f62a08a961e518c5d8p15@SNED1
6.64e-41FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_b2609e69c601e0f62a08a961e518c5d8p15@SNED1
1.31e-40FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_1cdc6a175e9004f86ef42118de908e4dp20@CAPZB
1.31e-40FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_1cdc6a175e9004f86ef42118de908e4dp20@CAPZB
1.8e-38FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_e42d55ff207fbb83806eea5d46233778p@chr2:12248310..12248334, -
1.8e-38FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_e42d55ff207fbb83806eea5d46233778p@chr2:12248310..12248334, -
2.75e-34FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_6be2b32c550a8a28606d42d572c061cfp6@SIX4
2.75e-34FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_6be2b32c550a8a28606d42d572c061cfp6@SIX4
5.96e-34FFCP PHASE1:Hg19::chr4:88727274..88727278,+#_3db98003e2f7033b38e796f488698ddap@chr4:88727274..88727278, +
5.96e-34FFCP PHASE1:Hg19::chr11:93468399..93468405,-#_3db98003e2f7033b38e796f488698ddap19@TAF1D, p1@SNORA40
5.96e-34FFCP PHASE2:Hg19::chr13:51101468..51101499,-#_3db98003e2f7033b38e796f488698ddap1@ENST00000428276
5.96e-34FFCP PHASE2:Hg19::chr4:88727274..88727278,+#_3db98003e2f7033b38e796f488698ddap@chr4:88727274..88727278, +
5.96e-34FFCP PHASE2:Hg19::chr11:93468399..93468405,-#_3db98003e2f7033b38e796f488698ddap19@TAF1D, p1@SNORA40
5.96e-34FFCP PHASE1:Hg19::chr13:51101468..51101499,-#_3db98003e2f7033b38e796f488698ddap1@ENST00000428276
2.09e-33FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_f5765e55777040ea2dd0bcfba4b9ad5bp4@NKX3-2
2.09e-33FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_f5765e55777040ea2dd0bcfba4b9ad5bp4@NKX3-2
4.01e-31FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_62d219110e0a7a585ff4ae88f8e1aad1p19@HDAC9
4.01e-31FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_62d219110e0a7a585ff4ae88f8e1aad1p19@HDAC9
1.98e-30FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_cb9bc95c8f9b2eb0614514d837018f0ap@chr2:241897125..241897142, -
1.98e-30FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_cb9bc95c8f9b2eb0614514d837018f0ap@chr2:241897125..241897142, -
4.84e-30FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_86e8d098af97dde0cc06eeee7accce6ap@chr3:80727046..80727051, -
4.84e-30FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_86e8d098af97dde0cc06eeee7accce6ap@chr3:80727046..80727051, -
7.46e-30FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_57cafb42c3e1a9838b0bb39554114c7fp@chr7:158224707..158224729, -
7.46e-30FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_57cafb42c3e1a9838b0bb39554114c7fp@chr7:158224707..158224729, -
1.48e-29FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_d4d60f580537466dec94c99cb5f7a40ap@chr1:65888177..65888194, +
1.48e-29FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_d4d60f580537466dec94c99cb5f7a40ap@chr1:65888177..65888194, +
2.72e-28FFCP PHASE1:Hg19::chr14:100848311..100848321,+#_aca7084480222cb172fae2595fd4d430p5@WDR25
2.72e-28FFCP PHASE2:Hg19::chr14:100848311..100848321,+#_aca7084480222cb172fae2595fd4d430p5@WDR25
3.26e-27FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_24998deac75850b3698d6eb7da8b395cp1@MGC27382
3.26e-27FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_24998deac75850b3698d6eb7da8b395cp1@MGC27382
6.92e-27FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_643b63144b409502c7fe17d58e23d1d6p@chr1:19778678..19778689, -
6.92e-27FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_643b63144b409502c7fe17d58e23d1d6p@chr1:19778678..19778689, -
1.46e-26FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_09329eafc0c52bbb4e5f14897a22c14fp18@HDAC9
1.46e-26FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_09329eafc0c52bbb4e5f14897a22c14fp18@HDAC9
1.74e-26FFCP PHASE1:Hg19::chr4:156129991..156130013,+#_3c94e1d5ec074f79b6da84ac32cbcff3p2@NPY2R
1.74e-26FFCP PHASE2:Hg19::chr4:156129991..156130013,+#_3c94e1d5ec074f79b6da84ac32cbcff3p2@NPY2R
7.41e-26FFCP PHASE2:Hg19::chr14:61113228..61113233,-#_2e708d3012e545c6222c80c756d9f7adp@chr14:61113228..61113233, -
7.41e-26FFCP PHASE1:Hg19::chr14:61113228..61113233,-#_2e708d3012e545c6222c80c756d9f7adp@chr14:61113228..61113233, -
2.04e-25FFCP PHASE1:Hg19::chr7:27212374..27212387,-#_338698b714cd28746e1a03db7ff40208p12@HOXA10
2.04e-25FFCP PHASE2:Hg19::chr7:27212374..27212387,-#_338698b714cd28746e1a03db7ff40208p12@HOXA10
6.22e-25FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_3494c2e6326c043a4840ae6c36cfd2a3p1@uc010aki.1
6.22e-25FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_3494c2e6326c043a4840ae6c36cfd2a3p1@uc010aki.1
9.49e-25FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_05ea90c174d1e5578a7e42e683935563p1@PAX1
9.49e-25FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_05ea90c174d1e5578a7e42e683935563p1@PAX1
4.58e-24FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_173144db2a9f9b174613e22f0274a4a7p@chr5:140887761..140887777, +
4.58e-24FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_173144db2a9f9b174613e22f0274a4a7p@chr5:140887761..140887777, +
5.35e-24FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_31b807691754732fcd8ac039aeca6e82p2@PAX1
5.35e-24FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_31b807691754732fcd8ac039aeca6e82p2@PAX1
8.55e-24FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_956b2ac207b28502d371ba8434322a65p16@HDAC9
8.55e-24FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_956b2ac207b28502d371ba8434322a65p16@HDAC9
2.01e-23FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_6f1447553ab67b6aaad87ce9858e32f6p4@NUP54
2.01e-23FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_6f1447553ab67b6aaad87ce9858e32f6p4@NUP54
2.28e-23FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_5137b53f133558f518780b83d7e013a2p1@NKX3-2
2.28e-23FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_5137b53f133558f518780b83d7e013a2p1@NKX3-2
3.27e-23FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_7af7d59aad335431de5a7b3c66d91b18p3@uc010aki.1
3.27e-23FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_7af7d59aad335431de5a7b3c66d91b18p3@uc010aki.1
1.25e-22FFCP PHASE1:Hg19::chr1:78695343..78695353,+#_3b443200435172366623fa9736599c96p2@ENST00000413519
1.25e-22FFCP PHASE2:Hg19::chr1:78695343..78695353,+#_3b443200435172366623fa9736599c96p2@ENST00000413519
1.46e-22FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_154a74f347918d6119de2d98bea65cc8p12@CDK5RAP2
1.46e-22FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_154a74f347918d6119de2d98bea65cc8p12@CDK5RAP2
9.47e-22FFCP PHASE2:Hg19::chr1:171076859..171076870,+#_51b12955147b386ae5f10ab637192fc9p@chr1:171076859..171076870, +
9.47e-22FFCP PHASE1:Hg19::chr1:171076859..171076870,+#_51b12955147b386ae5f10ab637192fc9p@chr1:171076859..171076870, +
1.35e-21FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_dc2cd72971494623ac52f3f6e5171032p@chr7:100202784..100202796, -
1.35e-21FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_dc2cd72971494623ac52f3f6e5171032p@chr7:100202784..100202796, -
3.83e-21FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_d3a1391006f519581ff875fc379d3709p4@PAX9
3.83e-21FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_d3a1391006f519581ff875fc379d3709p4@PAX9
4.02e-21FFCP PHASE1:Hg19::chr3:176765178..176765190,-#_81ec4dc72c0df3f85fd6358e4f92750ep@chr3:176765178..176765190, -
4.02e-21FFCP PHASE2:Hg19::chr3:176765178..176765190,-#_81ec4dc72c0df3f85fd6358e4f92750ep@chr3:176765178..176765190, -
4.06e-21FFCP PHASE2:Hg19::chr1:19810947..19810977,-#_9050eb8281bf4faf29ed3d8e4e1dc61bp17@CAPZB
4.06e-21FFCP PHASE1:Hg19::chr1:19810947..19810977,-#_9050eb8281bf4faf29ed3d8e4e1dc61bp17@CAPZB
5.43e-21FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_cc1e6e19c8749a18b106d95732b6f88dp8@HOXC6
5.43e-21FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_cc1e6e19c8749a18b106d95732b6f88dp8@HOXC6
4.94e-20FFCP PHASE1:Hg19::chr17:38613285..38613298,-#_76e84af69eed72119e74030e92214034p@chr17:38613285..38613298, -
4.94e-20FFCP PHASE2:Hg19::chr17:38613285..38613298,-#_76e84af69eed72119e74030e92214034p@chr17:38613285..38613298, -
9.53e-20FFCP PHASE2:Hg19::chr20:43343596..43343608,+#_d2a9f4fa4a863a7ae1dd4b67b361358ep6@WISP2
9.53e-20FFCP PHASE1:Hg19::chr20:43343596..43343608,+#_d2a9f4fa4a863a7ae1dd4b67b361358ep6@WISP2
1.46e-19FFCP PHASE2:Hg19::chr1:78958320..78958332,+#_1a5ea6be67994e295cf76857229de9e2p2@PTGFR
1.46e-19FFCP PHASE1:Hg19::chr1:78958320..78958332,+#_1a5ea6be67994e295cf76857229de9e2p2@PTGFR
2.04e-19FFCP PHASE1:Hg19::chr4:70707689..70707711,-#_ea081de71230aefe66a9e251b9df085cp@chr4:70707689..70707711, -
2.04e-19FFCP PHASE2:Hg19::chr4:70707689..70707711,-#_ea081de71230aefe66a9e251b9df085cp@chr4:70707689..70707711, -
3.75e-19FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_aca8f94d79b7f00c187168faae8510aep1@ENST00000555639
3.75e-19FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_aca8f94d79b7f00c187168faae8510aep1@ENST00000555639
4.68e-19FFCP PHASE1:Hg19::chr2:12246664..12246694,+#_a6835dabd563b77f7a94618ac30e489cp1@ENST00000449986
4.68e-19FFCP PHASE2:Hg19::chr2:12246664..12246694,+#_a6835dabd563b77f7a94618ac30e489cp1@ENST00000449986
1.04e-18FFCP PHASE2:Hg19::chr3:158390171..158390180,-#_3103db540b5c561af1b562f4c5184fccp3@LXN
1.04e-18FFCP PHASE1:Hg19::chr3:158390171..158390180,-#_3103db540b5c561af1b562f4c5184fccp3@LXN
5.12e-18FFCP PHASE1:Hg19::chr6:112375300..112375334,+#_d8ec065c12a7957005b6e43519f4513ap1@WISP3
5.12e-18FFCP PHASE2:Hg19::chr6:112375300..112375334,+#_d8ec065c12a7957005b6e43519f4513ap1@WISP3
9.14e-18FFCP PHASE1:Hg19::chr8:77595678..77595688,+#_2933f578831553b27a615869e8255855p9@ZFHX4
9.14e-18FFCP PHASE2:Hg19::chr8:77595678..77595688,+#_2933f578831553b27a615869e8255855p9@ZFHX4

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