FFCP PHASE1:Mm9::chr7:52156943..52156963,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=11771 | |EntrezGene=11771 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=123 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=100bp_to_ENSMUST00000170656_5end | |association_with_transcript=100bp_to_ENSMUST00000170656_5end | ||
|cluster_id=chr7:52156943..52156963,- | |||
|description=CAGE_peak_5_at_Ap2a1_5end | |description=CAGE_peak_5_at_Ap2a1_5end | ||
|id=chr7:52156943..52156963,- | |id=chr7:52156943..52156963,- | ||
|ontology_enrichment_celltype=CL:0000791!1.42e-08!9;CL:0000789!1.42e-08!9;CL:0002420!1.42e-08!9;CL:0002419!1.42e-08!9;CL:0000790!1.42e-08!9;CL:0000624!1.27e-07!8;CL:0000838!2.83e-07!12 | |ontology_enrichment_celltype=CL:0000791!1.42e-08!9;CL:0000789!1.42e-08!9;CL:0002420!1.42e-08!9;CL:0002419!1.42e-08!9;CL:0000790!1.42e-08!9;CL:0000624!1.27e-07!8;CL:0000838!2.83e-07!12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000838,7.41e-17,12;CL:0000791,4.12e-16,9;CL:0000789,4.12e-16,9;CL:0002420,4.12e-16,9;CL:0002419,4.12e-16,9;CL:0000790,4.12e-16,9;CL:0000542,1.56e-15,13;CL:0000051,1.56e-15,13;CL:0002031,1.07e-13,25;CL:0000084,3.62e-13,11;CL:0000827,3.62e-13,11;CL:0000624,6.30e-12,8;CL:0000738,8.60e-12,17;CL:0002087,8.60e-12,17;CL:0000988,1.65e-10,32;CL:0002032,1.65e-10,32;CL:0000037,1.65e-10,32;CL:0000837,1.65e-10,32;CL:0000815,3.14e-07,1;CL:0000792,3.14e-07,1;CL:0000625,4.68e-07,1;CL:0002320,4.97e-07,46;CL:0000134,4.97e-07,46 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001004!3.09e-18!42;UBERON:0000065!1.82e-17!41;UBERON:0003408!8.87e-14!24;UBERON:0002370!5.15e-13!23;UBERON:0000974!5.15e-13!23;UBERON:0004807!5.15e-13!23;UBERON:0005058!5.15e-13!23;UBERON:0003351!5.15e-13!23;UBERON:0009113!5.15e-13!23;UBERON:0003295!5.15e-13!23;UBERON:0009722!5.15e-13!23;UBERON:0005562!5.15e-13!23;UBERON:0007690!5.15e-13!23;UBERON:0004177!9.09e-13!29;UBERON:0006562!3.85e-12!24;UBERON:0001557!3.85e-12!24;UBERON:0001042!3.85e-12!24;UBERON:0008814!3.85e-12!24;UBERON:0009145!3.85e-12!24;UBERON:0000072!4.74e-11!27;UBERON:0002193!2.64e-09!48;UBERON:0002390!1.26e-08!45;UBERON:0003061!1.26e-08!45;UBERON:0000063!6.77e-08!35;UBERON:0005911!1.33e-07!69;UBERON:0002048!2.19e-07!14;UBERON:0000117!2.19e-07!14;UBERON:0000171!2.19e-07!14;UBERON:0000170!2.19e-07!14;UBERON:0005597!2.19e-07!14;UBERON:0000118!2.19e-07!14;UBERON:0001041!6.04e-07!92 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.38e-11,23;UBERON:0000974,3.38e-11,23;UBERON:0004807,3.38e-11,23;UBERON:0005058,3.38e-11,23;UBERON:0003351,3.38e-11,23;UBERON:0009113,3.38e-11,23;UBERON:0003295,3.38e-11,23;UBERON:0009722,3.38e-11,23;UBERON:0005562,3.38e-11,23;UBERON:0007690,3.38e-11,23;UBERON:0006562,1.05e-10,24;UBERON:0003408,1.05e-10,24;UBERON:0001557,1.05e-10,24;UBERON:0001042,1.05e-10,24;UBERON:0008814,1.05e-10,24;UBERON:0009145,1.05e-10,24;UBERON:0002193,3.00e-10,48;UBERON:0002405,3.00e-10,48;UBERON:0000072,1.91e-09,27;UBERON:0002390,6.69e-09,45;UBERON:0003061,6.69e-09,45;UBERON:0004177,9.51e-09,29;UBERON:0005057,9.51e-09,29;UBERON:0000065,1.02e-07,41;UBERON:0001004,1.63e-07,42;UBERON:0000077,3.91e-07,35;UBERON:0002384,4.97e-07,46;UBERON:0001153,6.09e-07,1;UBERON:0001045,6.09e-07,1;UBERON:0007811,6.45e-07,36 | |||
|phase1_expression=0.320297694209588,0.348975407639361,0.454999239389536,0,0,0,0,4.26106967357202,0.84473233291,0.234064526321993,0.513653904676515,0.319088635981346,2.73921167889929,1.83582845079895,0,0.202475267389826,0,1.41957974411207,0.411343300817216,2.54633791078818,0.17008658030214,0,0,0.319984845586813,0,0.57423196411502,0,0,0.190023419456374,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.51004345451963,4.35217285206807,2.01656279485478,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103689612308478,0,0,0,0,0,0,0,0,0,0.153606533256243,0,0,0,0,0.56276261003168,0.15279824777681,0,0.142371680799103,0,0.075726193333184,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0.281686839553361,0,0,0,0,0.253359865475099,0,0.34255163915718,1.55362730188303,0.148442139064825,0,0,0,0,0,0.251333182659351,0.494389935468748,0,0,0,0,0,1.86391761218122,0,0,0,0.11981512450592,0,0.127070227073065,0.299581278809645,0,0,0,0,0,0.162241263067758,0.203678727700633,0.124406970610093,0,0.420883711772948,0.130120442962704,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0.233530684734339,0.16455984991348,0,0,0,0,0.134206418760372,0,0,0.330418782983798,0,0,0,0,0,0,0.190225626112559,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0.350679099451593,0.0632365371242573,0,0.156998727841375,0.123397163921801,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0.923765950833023,0.568474235311454,0.325929952884052,0,0.234690248288502,0.502518772325447,0.952174563544055,1.17080188714679,0.157635144106191,0,0.478364305972461,0.81931657357869,0.518054945597687,0.867894351489069,0,0,0,0,0,0,0,0,0,0.390438744296638,0,0,0,0,0,0,0,0,0.141940085208269,0.178065603667255,0.488660878060728,0,0,0.242780636154981,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0.18006109403131,0.388076051348264,0.214337035031592,0.177340233642274,0,0,0.304464949114599,0,0,0.661585194164886,0,0,0,0,0,0,0,0.170870880797853,0,0,0.188368457004691,0.136694227721025,0.457556346413045,0,0.419854356970974,0.276399947608848,0.954670618015114,0,0,0,0.209088296014469,0,0.269728692769641,0,0.26175594198403,0,0.621339313086926,0,0.299033092087958,0.165458490457098,0,0,0.168956125490778,0.117357238645754,0.5208175393758,0.104859344425711,0,0,1.26404448251271,0.405450430580328,0.205421914329655,0.649604114888975,0.537080087002444,0.596044064343795,0.360586348559907,1.62458479892035,0.504832249740738,0.762068066549998,0.907435666231565,1.65678397257579,1.82802499116626,1.98690733708667,0,0,0,0,0,0.375364950902364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0,0,0,0.320919209591815,0.252697211763798,0.50695859978048,0,0,0.192075457214608,0.114870937911227,0,0.115884325944855,0,0.412085900803307,0,0,0.177475806159338,0,0,0.188218760830661,0,0,0.526139422875686,0.135804113845862,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0.320297694209588,0.348975407639361,0.454999239389536,0,0,0,0,4.26106967357202,0.84473233291,0.234064526321993,0.513653904676515,0.319088635981346,2.73921167889929,1.83582845079895,0,0.202475267389826,0,1.41957974411207,0.411343300817216,2.54633791078818,0.17008658030214,0,0,0.319984845586813,0,0.57423196411502,0,0,0.190023419456374,0,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.51004345451963,4.35217285206807,2.01656279485478,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103689612308478,0,0,0,0,0,0,0,0,0,0.153606533256243,0,0,0,0,0.56276261003168,0.15279824777681,0,0.142371680799103,0,0.075726193333184,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0.281686839553361,0,0,0,0,0.253359865475099,0,0.34255163915718,1.55362730188303,0.148442139064825,0,0,0,0,0,0.251333182659351,0.494389935468748,0,0,0,0,0,1.86391761218122,0,0,0,0.11981512450592,0,0.127070227073065,0.299581278809645,0,0,0,0,0,0.162241263067758,0.203678727700633,0.124406970610093,0,0.420883711772948,0.130120442962704,0,0,0,0.0680364991513279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234526059981096,0,0,0,0,0,0,0.233530684734339,0.16455984991348,0,0,0,0,0.134206418760372,0,0,0.330418782983798,0,0,0,0,0,0,0.190225626112559,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0.350679099451593,0.0632365371242573,0,0.156998727841375,0.123397163921801,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0.923765950833023,0.568474235311454,0.325929952884052,0,0.234690248288502,0.502518772325447,0.952174563544055,1.17080188714679,0.157635144106191,0,0.478364305972461,0.81931657357869,0.518054945597687,0.867894351489069,0,0,0,0,0,0,0,0,0,0.390438744296638,0,0,0,0,0,0,0,0,0.141940085208269,0.178065603667255,0.488660878060728,0,0,0.242780636154981,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0.18006109403131,0.388076051348264,0.214337035031592,0.177340233642274,0,0,0.304464949114599,0,0,0.661585194164886,0,0,0,0,0,0,0,0.170870880797853,0,0,0.188368457004691,0.136694227721025,0.457556346413045,0,0.419854356970974,0.276399947608848,0.954670618015114,0,0,0,0.209088296014469,0,0.269728692769641,0,0.26175594198403,0,0.621339313086926,0,0.299033092087958,0.165458490457098,0,0,0.168956125490778,0.117357238645754,0.5208175393758,0.104859344425711,0,0,1.26404448251271,0.405450430580328,0.205421914329655,0.649604114888975,0.537080087002444,0.596044064343795,0.360586348559907,1.62458479892035,0.504832249740738,0.762068066549998,0.907435666231565,1.65678397257579,1.82802499116626,1.98690733708667,0,0,0,0,0,0.375364950902364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0,0,0,0.320919209591815,0.252697211763798,0.50695859978048,0,0,0.192075457214608,0.114870937911227,0,0.115884325944855,0,0.412085900803307,0,0,0.177475806159338,0,0,0.188218760830661,0,0,0.526139422875686,0.135804113845862,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p5@Ap2a1 | |short_description=p5@Ap2a1 | ||
}} | }} |
Latest revision as of 20:29, 26 September 2015
Short description: | p5@Ap2a1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Ap2a1_5end |
Coexpression cluster: | MCL_coexpression_mm9:123 |
Association with transcript: | 100bp_to_ENSMUST00000170656_5end |
EntrezGene: | Ap2a1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 7.41e-17 | 12 |
mature alpha-beta T cell | 4.12e-16 | 9 |
alpha-beta T cell | 4.12e-16 | 9 |
immature T cell | 4.12e-16 | 9 |
mature T cell | 4.12e-16 | 9 |
immature alpha-beta T cell | 4.12e-16 | 9 |
lymphocyte | 1.56e-15 | 13 |
common lymphoid progenitor | 1.56e-15 | 13 |
hematopoietic lineage restricted progenitor cell | 1.07e-13 | 25 |
T cell | 3.62e-13 | 11 |
pro-T cell | 3.62e-13 | 11 |
CD4-positive, alpha-beta T cell | 6.30e-12 | 8 |
leukocyte | 8.60e-12 | 17 |
nongranular leukocyte | 8.60e-12 | 17 |
hematopoietic cell | 1.65e-10 | 32 |
hematopoietic oligopotent progenitor cell | 1.65e-10 | 32 |
hematopoietic stem cell | 1.65e-10 | 32 |
hematopoietic multipotent progenitor cell | 1.65e-10 | 32 |
regulatory T cell | 3.14e-07 | 1 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.14e-07 | 1 |
CD8-positive, alpha-beta T cell | 4.68e-07 | 1 |
connective tissue cell | 4.97e-07 | 46 |
mesenchymal cell | 4.97e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
thymus | 3.38e-11 | 23 |
neck | 3.38e-11 | 23 |
respiratory system epithelium | 3.38e-11 | 23 |
hemolymphoid system gland | 3.38e-11 | 23 |
pharyngeal epithelium | 3.38e-11 | 23 |
thymic region | 3.38e-11 | 23 |
pharyngeal gland | 3.38e-11 | 23 |
entire pharyngeal arch endoderm | 3.38e-11 | 23 |
thymus primordium | 3.38e-11 | 23 |
early pharyngeal endoderm | 3.38e-11 | 23 |
pharynx | 1.05e-10 | 24 |
gland of gut | 1.05e-10 | 24 |
upper respiratory tract | 1.05e-10 | 24 |
chordate pharynx | 1.05e-10 | 24 |
pharyngeal arch system | 1.05e-10 | 24 |
pharyngeal region of foregut | 1.05e-10 | 24 |
hemolymphoid system | 3.00e-10 | 48 |
immune system | 3.00e-10 | 48 |
segment of respiratory tract | 1.91e-09 | 27 |
hematopoietic system | 6.69e-09 | 45 |
blood island | 6.69e-09 | 45 |
hemopoietic organ | 9.51e-09 | 29 |
immune organ | 9.51e-09 | 29 |
respiratory tract | 1.02e-07 | 41 |
respiratory system | 1.63e-07 | 42 |
mixed endoderm/mesoderm-derived structure | 3.91e-07 | 35 |
connective tissue | 4.97e-07 | 46 |
caecum | 6.09e-07 | 1 |
midgut | 6.09e-07 | 1 |
craniocervical region | 6.45e-07 | 36 |