FFCP PHASE1:Mm9::chr2:30219747..30219780,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=108958 | |EntrezGene=108958 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BK03 | |UniProt=Q8BK03 | ||
|association_with_transcript=0bp_to_ENSMUST00000077977,ENSMUST00000140075,ENSMUST00000146308,NM_001242407,uc008jcf.1,uc008jcg.1_5end | |association_with_transcript=0bp_to_ENSMUST00000077977,ENSMUST00000140075,ENSMUST00000146308,NM_001242407,uc008jcf.1,uc008jcg.1_5end | ||
|cluster_id=chr2:30219747..30219780,+ | |||
|description=CAGE_peak_1_at_Fam73b_5end | |description=CAGE_peak_1_at_Fam73b_5end | ||
|id=chr2:30219747..30219780,+ | |id=chr2:30219747..30219780,+ | ||
|ontology_enrichment_celltype=CL:0000117!4.32e-07!23;CL:0000337!4.32e-07!23 | |ontology_enrichment_celltype=CL:0000117!4.32e-07!23;CL:0000337!4.32e-07!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.32e-07,23;CL:0000337,4.32e-07,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.61e-18!52;UBERON:0005068!4.61e-18!52;UBERON:0006241!4.61e-18!52;UBERON:0007135!4.61e-18!52;UBERON:0000955!7.11e-18!50;UBERON:0006238!7.11e-18!50;UBERON:0002616!2.83e-17!49;UBERON:0001017!1.02e-16!73;UBERON:0005743!1.02e-16!73;UBERON:0000073!2.82e-16!75;UBERON:0001016!2.82e-16!75;UBERON:0000033!3.99e-14!63;UBERON:0002346!1.40e-13!71;UBERON:0003075!1.40e-13!71;UBERON:0007284!1.40e-13!71;UBERON:0002020!2.66e-12!34;UBERON:0003080!2.77e-12!40;UBERON:0002780!1.08e-11!39;UBERON:0001890!1.08e-11!39;UBERON:0006240!1.08e-11!39;UBERON:0004121!1.61e-11!102;UBERON:0000924!1.61e-11!102;UBERON:0006601!1.61e-11!102;UBERON:0000025!7.03e-11!114;UBERON:0002791!2.95e-10!29;UBERON:0003528!2.95e-10!29;UBERON:0001893!2.95e-10!29;UBERON:0003056!4.11e-10!49;UBERON:0004111!5.14e-10!122;UBERON:0000956!1.32e-07!21;UBERON:0001869!1.32e-07!21;UBERON:0000203!1.32e-07!21;UBERON:0003076!8.47e-07!12;UBERON:0003057!8.47e-07!12 | |ontology_enrichment_uberon=UBERON:0001049!4.61e-18!52;UBERON:0005068!4.61e-18!52;UBERON:0006241!4.61e-18!52;UBERON:0007135!4.61e-18!52;UBERON:0000955!7.11e-18!50;UBERON:0006238!7.11e-18!50;UBERON:0002616!2.83e-17!49;UBERON:0001017!1.02e-16!73;UBERON:0005743!1.02e-16!73;UBERON:0000073!2.82e-16!75;UBERON:0001016!2.82e-16!75;UBERON:0000033!3.99e-14!63;UBERON:0002346!1.40e-13!71;UBERON:0003075!1.40e-13!71;UBERON:0007284!1.40e-13!71;UBERON:0002020!2.66e-12!34;UBERON:0003080!2.77e-12!40;UBERON:0002780!1.08e-11!39;UBERON:0001890!1.08e-11!39;UBERON:0006240!1.08e-11!39;UBERON:0004121!1.61e-11!102;UBERON:0000924!1.61e-11!102;UBERON:0006601!1.61e-11!102;UBERON:0000025!7.03e-11!114;UBERON:0002791!2.95e-10!29;UBERON:0003528!2.95e-10!29;UBERON:0001893!2.95e-10!29;UBERON:0003056!4.11e-10!49;UBERON:0004111!5.14e-10!122;UBERON:0000956!1.32e-07!21;UBERON:0001869!1.32e-07!21;UBERON:0000203!1.32e-07!21;UBERON:0003076!8.47e-07!12;UBERON:0003057!8.47e-07!12 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.58e-19,54;UBERON:0001049,4.61e-18,52;UBERON:0005068,4.61e-18,52;UBERON:0006241,4.61e-18,52;UBERON:0007135,4.61e-18,52;UBERON:0001017,1.02e-16,73;UBERON:0001016,2.82e-16,75;UBERON:0000955,7.25e-16,47;UBERON:0006238,7.25e-16,47;UBERON:0002616,2.77e-15,46;UBERON:0010314,1.15e-14,92;UBERON:0002346,1.28e-13,64;UBERON:0003075,1.28e-13,64;UBERON:0007284,1.28e-13,64;UBERON:0002020,2.66e-12,34;UBERON:0003080,2.77e-12,40;UBERON:0002780,1.08e-11,39;UBERON:0001890,1.08e-11,39;UBERON:0006240,1.08e-11,39;UBERON:0010371,1.57e-11,73;UBERON:0004121,3.09e-11,95;UBERON:0000924,3.09e-11,95;UBERON:0006601,3.09e-11,95;UBERON:0000025,7.03e-11,114;UBERON:0003528,2.95e-10,29;UBERON:0002791,2.95e-10,29;UBERON:0001893,2.95e-10,29;UBERON:0003056,4.11e-10,49;UBERON:0004111,5.14e-10,122;UBERON:0000956,1.32e-07,21;UBERON:0001869,1.32e-07,21;UBERON:0000203,1.32e-07,21;UBERON:0003076,8.47e-07,12;UBERON:0003057,8.47e-07,12 | |||
|phase1_expression=9.76907967339243,14.3079917132138,9.55498402718026,18.7527811010235,26.0465779572101,5.37213670118047,3.50418960893289,4.9066862907799,0.563154888606667,1.17032263160997,8.38968044304974,10.2906085103984,5.13602189793617,6.11942816932982,5.66286595086627,6.2767332890846,5.59649502502517,8.51747846467242,6.30726394586398,5.51706547337439,10.2051948181284,4.46809280403984,3.6567970479451,8.79958325363737,7.11168771308227,4.01962374880514,11.1998119001359,7.32602191132023,8.36103045608045,6.80481350351813,7.09537634096975,20.3209815507082,23.3724619282137,15.8481681015439,6.35473563452804,6.15068187826422,3.47087905646027,1.25559489221072,1.5626706890476,1.0470474879476,0,0.683045484958446,0.971020706062307,6.92432498865675,7.80602370390262,5.68994931701213,17.2126095756569,8.93903141159831,11.643367684927,14.387812531497,7.55926676776958,12.9377307928474,2.51673909086605,4.35217285206807,3.36093799142464,4.11615097657515,5.44413535883638,8.25075347643908,11.9366711907163,9.52183762689659,15.8457850876545,9.4876468979357,11.5608323494448,8.09909745553259,13.8441290759376,6.3943210345149,16.1784059679939,19.9793518767208,10.7837196800817,11.2054928815303,9.88527318351495,15.1395021734016,20.0990372265968,6.61450315760752,7.57179221044067,8.27296907949019,30.8324466798288,22.6006588410782,21.6585211891303,10.8146755938759,10.5210790142771,9.37644067002168,26.2432019061298,15.1945904708554,20.1693687065389,12.374400589894,13.810053037513,11.9295645328192,9.16286939331527,6.12129636864963,4.34796733052517,7.74381489283248,2.719885334831,10.2543606411185,16.8941868536394,15.2329141613094,9.55022056895913,6.64678258054425,5.45550609666024,4.94675404314476,9.57735254481427,6.41632387071589,12.7402619853323,0,5.19578498426914,5.32055717497707,4.54972000513305,9.47726201668198,4.40194402200192,9.79718117827843,8.32729568477452,10.9607572192371,9.22461989024234,7.53613202763113,6.23220147819235,11.6869929936598,3.70792451601561,17.2073234734695,2.65383165584962,6.47067399789637,3.09178125844551,9.21262980956922,9.31958806090611,22.5441213698891,30.369772487951,8.43008282188352,2.39630249011841,1.19980546198682,1.90605340609597,20.8208988772704,17.3850229071078,10.8062742817063,16.339486098074,19.1786592997748,27.2202338373024,23.0382593556216,5.19380755636613,5.84712761867437,6.31806896084187,13.8891624885073,6.76626303406059,7.35686734187113,4.14142898552303,8.43946979880004,7.8241974024027,6.02134485338794,7.12133106653939,10.3481348295606,5.38919982332106,8.50977360755187,8.79755620819744,7.89104636739269,7.50727572909114,11.4923214952315,6.99659263787008,7.96137067273973,0.702213187313235,2.31613116403244,2.84163499395593,7.24940203874257,7.97388603935727,7.38254451990161,8.75955521665278,11.6090896730968,9.87309522479221,7.44108623201305,13.1453966685813,9.5747580741079,13.000228143165,12.6408947340903,12.4845966700618,16.5205985790626,15.1489579550825,11.2733391758712,19.9775451135921,12.7601719350313,15.5296828002385,16.9248362664668,7.67837701926842,10.6828869055802,8.24751752461397,6.25218926332362,6.67134131534611,5.70676878337677,12.8122846617018,6.0938613247884,8.54539709920916,5.57078121715222,7.01870713628832,8.08937467788799,9.07779809473716,10.1562049359727,6.06937283049861,7.76889885746156,10.1436962105772,9.16430975303914,7.17624202520215,5.82127305089644,8.28398636327771,12.251642282307,13.1878931386755,11.105744752962,10.9687472022245,5.17219827719892,5.89676985339609,5.17182858485164,5.47722327748958,4.10001171579109,5.0925170356284,4.60313819921297,6.64754429777645,6.86403532970204,12.9391385874619,8.93138274404408,9.36113019343682,10.6083128737787,13.4548060141434,14.473305640901,6.65111484599777,7.20067364727842,6.19266910479698,6.62005834523234,6.10194645550105,5.86271901046355,7.14130922658041,7.21994497073856,5.51723004371669,8.41565820665345,9.24837658213425,8.52089236521838,8.46156411142888,8.53429445630918,4.52373851817817,2.17562273527484,5.4094070032094,3.03530420935206,20.5504755184374,22.0357970793342,4.75411341592359,8.07906967053994,5.67914794949262,1.95219372148319,6.46270193198397,6.69112634267146,7.79795359288379,3.39691836946599,4.85772842009873,5.55286130031493,4.74345333535828,19.2792789853084,8.37446502728785,8.369083372361,6.8412522928502,8.08353602565424,10.619611067197,7.76898035695941,8.46505959501303,6.03536255218874,4.42952839321159,4.30409207121498,8.26970538138308,7.99774204850512,4.9909632973861,6.0046984007805,5.27093042874994,7.21948802737308,11.234506989875,6.48219938512717,8.5376731296618,10.2881776815164,7.98031051390231,10.7021290561242,9.87294123612726,15.5277124048446,5.39744928546534,4.2366414172764,5.51320995137405,6.5954501176592,6.62004149453213,7.96130609051657,8.35606408021955,8.20704498725306,12.8251568117134,18.7279555030615,5.29699730473343,8.46186158649212,5.18544676635193,7.72310673719233,8.33834789098253,8.00723606222829,3.0596117398894,2.93898049879682,1.65839968565309,11.4560474161814,9.17374381385292,7.72613975082025,7.77638453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| ||
|short_description=p1@Fam73b | |short_description=p1@Fam73b | ||
}} | }} |
Latest revision as of 13:02, 26 September 2015
Short description: | p1@Fam73b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Fam73b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000077977, ENSMUST00000140075, ENSMUST00000146308, NM_001242407, uc008jcf.1, uc008jcg.1_5end |
EntrezGene: | Fam73b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.32e-07 | 23 |
neuroblast (sensu Vertebrata) | 4.32e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.58e-19 | 54 |
neural tube | 4.61e-18 | 52 |
neural rod | 4.61e-18 | 52 |
future spinal cord | 4.61e-18 | 52 |
neural keel | 4.61e-18 | 52 |
central nervous system | 1.02e-16 | 73 |
nervous system | 2.82e-16 | 75 |
brain | 7.25e-16 | 47 |
future brain | 7.25e-16 | 47 |
regional part of brain | 2.77e-15 | 46 |
structure with developmental contribution from neural crest | 1.15e-14 | 92 |
neurectoderm | 1.28e-13 | 64 |
neural plate | 1.28e-13 | 64 |
presumptive neural plate | 1.28e-13 | 64 |
gray matter | 2.66e-12 | 34 |
anterior neural tube | 2.77e-12 | 40 |
regional part of forebrain | 1.08e-11 | 39 |
forebrain | 1.08e-11 | 39 |
future forebrain | 1.08e-11 | 39 |
ecto-epithelium | 1.57e-11 | 73 |
ectoderm-derived structure | 3.09e-11 | 95 |
ectoderm | 3.09e-11 | 95 |
presumptive ectoderm | 3.09e-11 | 95 |
tube | 7.03e-11 | 114 |
brain grey matter | 2.95e-10 | 29 |
regional part of telencephalon | 2.95e-10 | 29 |
telencephalon | 2.95e-10 | 29 |
pre-chordal neural plate | 4.11e-10 | 49 |
anatomical conduit | 5.14e-10 | 122 |
cerebral cortex | 1.32e-07 | 21 |
cerebral hemisphere | 1.32e-07 | 21 |
pallium | 1.32e-07 | 21 |
posterior neural tube | 8.47e-07 | 12 |
chordal neural plate | 8.47e-07 | 12 |