FFCP PHASE1:Mm9::chr3:84063658..84063709,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=80890 | |EntrezGene=80890 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2382 | |||
|TSSclassifier=NA | |||
|UniProt=Q3UHH4 | |UniProt=Q3UHH4 | ||
|association_with_transcript=0bp_to_uc008ppx.2_5end | |association_with_transcript=0bp_to_uc008ppx.2_5end | ||
|cluster_id=chr3:84063658..84063709,- | |||
|description=CAGE_peak_2_at_Trim2_5end | |description=CAGE_peak_2_at_Trim2_5end | ||
|id=chr3:84063658..84063709,- | |id=chr3:84063658..84063709,- | ||
|ontology_enrichment_celltype=CL:0000393!5.52e-10!39;CL:0000211!5.52e-10!39;CL:0000540!6.87e-10!33;CL:0000047!6.87e-10!33;CL:0000031!6.87e-10!33;CL:0000404!6.87e-10!33;CL:0000117!4.04e-08!23;CL:0000337!4.04e-08!23;CL:0000055!4.36e-07!50 | |ontology_enrichment_celltype=CL:0000393!5.52e-10!39;CL:0000211!5.52e-10!39;CL:0000540!6.87e-10!33;CL:0000047!6.87e-10!33;CL:0000031!6.87e-10!33;CL:0000404!6.87e-10!33;CL:0000117!4.04e-08!23;CL:0000337!4.04e-08!23;CL:0000055!4.36e-07!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000393,3.81e-10,39;CL:0000211,3.81e-10,39;CL:0000540,4.76e-10,33;CL:0000047,4.76e-10,33;CL:0000031,4.76e-10,33;CL:0000404,4.76e-10,33;CL:0000117,3.03e-08,23;CL:0000337,3.03e-08,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.41e-19!102;UBERON:0000924!2.41e-19!102;UBERON:0006601!2.41e-19!102;UBERON:0001017!1.24e-15!73;UBERON:0005743!1.24e-15!73;UBERON:0000073!9.45e-15!75;UBERON:0001016!9.45e-15!75;UBERON:0002346!6.84e-14!71;UBERON:0003075!6.84e-14!71;UBERON:0007284!6.84e-14!71;UBERON:0002020!9.86e-14!34;UBERON:0000033!1.13e-12!63;UBERON:0001049!2.37e-12!52;UBERON:0005068!2.37e-12!52;UBERON:0006241!2.37e-12!52;UBERON:0007135!2.37e-12!52;UBERON:0000955!4.81e-12!50;UBERON:0006238!4.81e-12!50;UBERON:0002791!5.70e-12!29;UBERON:0003528!5.70e-12!29;UBERON:0001893!5.70e-12!29;UBERON:0002616!1.39e-11!49;UBERON:0000956!6.86e-10!21;UBERON:0001869!6.86e-10!21;UBERON:0000203!6.86e-10!21;UBERON:0004111!7.09e-10!122;UBERON:0003056!2.43e-09!49;UBERON:0003080!4.48e-09!40;UBERON:0002780!1.44e-08!39;UBERON:0001890!1.44e-08!39;UBERON:0006240!1.44e-08!39;UBERON:0000025!2.55e-08!114;UBERON:0002619!7.41e-08!17;UBERON:0000468!8.24e-08!333 | |ontology_enrichment_uberon=UBERON:0004121!2.41e-19!102;UBERON:0000924!2.41e-19!102;UBERON:0006601!2.41e-19!102;UBERON:0001017!1.24e-15!73;UBERON:0005743!1.24e-15!73;UBERON:0000073!9.45e-15!75;UBERON:0001016!9.45e-15!75;UBERON:0002346!6.84e-14!71;UBERON:0003075!6.84e-14!71;UBERON:0007284!6.84e-14!71;UBERON:0002020!9.86e-14!34;UBERON:0000033!1.13e-12!63;UBERON:0001049!2.37e-12!52;UBERON:0005068!2.37e-12!52;UBERON:0006241!2.37e-12!52;UBERON:0007135!2.37e-12!52;UBERON:0000955!4.81e-12!50;UBERON:0006238!4.81e-12!50;UBERON:0002791!5.70e-12!29;UBERON:0003528!5.70e-12!29;UBERON:0001893!5.70e-12!29;UBERON:0002616!1.39e-11!49;UBERON:0000956!6.86e-10!21;UBERON:0001869!6.86e-10!21;UBERON:0000203!6.86e-10!21;UBERON:0004111!7.09e-10!122;UBERON:0003056!2.43e-09!49;UBERON:0003080!4.48e-09!40;UBERON:0002780!1.44e-08!39;UBERON:0001890!1.44e-08!39;UBERON:0006240!1.44e-08!39;UBERON:0000025!2.55e-08!114;UBERON:0002619!7.41e-08!17;UBERON:0000468!8.24e-08!333 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.45e-17,95;UBERON:0000924,2.45e-17,95;UBERON:0006601,2.45e-17,95;UBERON:0010371,1.30e-15,73;UBERON:0001017,4.29e-15,73;UBERON:0001016,3.14e-14,75;UBERON:0002020,5.78e-14,34;UBERON:0000073,4.24e-13,54;UBERON:0002346,1.61e-12,64;UBERON:0003075,1.61e-12,64;UBERON:0007284,1.61e-12,64;UBERON:0003528,3.61e-12,29;UBERON:0002791,3.61e-12,29;UBERON:0001893,3.61e-12,29;UBERON:0001049,4.45e-12,52;UBERON:0005068,4.45e-12,52;UBERON:0006241,4.45e-12,52;UBERON:0007135,4.45e-12,52;UBERON:0000955,3.27e-10,47;UBERON:0006238,3.27e-10,47;UBERON:0000956,4.76e-10,21;UBERON:0001869,4.76e-10,21;UBERON:0000203,4.76e-10,21;UBERON:0002616,9.09e-10,46;UBERON:0004111,2.42e-09,122;UBERON:0003056,3.35e-09,49;UBERON:0003080,6.54e-09,40;UBERON:0010314,1.67e-08,92;UBERON:0002780,2.12e-08,39;UBERON:0001890,2.12e-08,39;UBERON:0006240,2.12e-08,39;UBERON:0002619,5.62e-08,17;UBERON:0000025,8.18e-08,114 | |||
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| ||
|short_description=p2@Trim2 | |short_description=p2@Trim2 | ||
}} | }} |
Latest revision as of 18:29, 25 September 2015
Short description: | p2@Trim2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Trim2_5end |
Coexpression cluster: | MCL_coexpression_mm9:2382 |
Association with transcript: | 0bp_to_uc008ppx.2_5end |
EntrezGene: | Trim2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 3.81e-10 | 39 |
electrically active cell | 3.81e-10 | 39 |
neuron | 4.76e-10 | 33 |
neuronal stem cell | 4.76e-10 | 33 |
neuroblast | 4.76e-10 | 33 |
electrically signaling cell | 4.76e-10 | 33 |
CNS neuron (sensu Vertebrata) | 3.03e-08 | 23 |
neuroblast (sensu Vertebrata) | 3.03e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.45e-17 | 95 |
ectoderm | 2.45e-17 | 95 |
presumptive ectoderm | 2.45e-17 | 95 |
ecto-epithelium | 1.30e-15 | 73 |
central nervous system | 4.29e-15 | 73 |
nervous system | 3.14e-14 | 75 |
gray matter | 5.78e-14 | 34 |
regional part of nervous system | 4.24e-13 | 54 |
neurectoderm | 1.61e-12 | 64 |
neural plate | 1.61e-12 | 64 |
presumptive neural plate | 1.61e-12 | 64 |
brain grey matter | 3.61e-12 | 29 |
regional part of telencephalon | 3.61e-12 | 29 |
telencephalon | 3.61e-12 | 29 |
neural tube | 4.45e-12 | 52 |
neural rod | 4.45e-12 | 52 |
future spinal cord | 4.45e-12 | 52 |
neural keel | 4.45e-12 | 52 |
brain | 3.27e-10 | 47 |
future brain | 3.27e-10 | 47 |
cerebral cortex | 4.76e-10 | 21 |
cerebral hemisphere | 4.76e-10 | 21 |
pallium | 4.76e-10 | 21 |
regional part of brain | 9.09e-10 | 46 |
anatomical conduit | 2.42e-09 | 122 |
pre-chordal neural plate | 3.35e-09 | 49 |
anterior neural tube | 6.54e-09 | 40 |
structure with developmental contribution from neural crest | 1.67e-08 | 92 |
regional part of forebrain | 2.12e-08 | 39 |
forebrain | 2.12e-08 | 39 |
future forebrain | 2.12e-08 | 39 |
regional part of cerebral cortex | 5.62e-08 | 17 |
tube | 8.18e-08 | 114 |