FFCP PHASE1:Hg19::chr10:54259403..54259416,+: Difference between revisions
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|id=chr10:54259403..54259416,+
|short_description=p@chr10:54259403..54259416,+
|description=CAGE_peak_at_chr10:54259403..54259416,+
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr10:54259403..54259416,+ | |||
|coexpression_cluster_id=C234 | |||
|description=CAGE_peak_at_chr10:54259403..54259416,+ | |||
|id=chr10:54259403..54259416,+ | |||
|ontology_enrichment_celltype=CL:0002251!2.13e-10!21;CL:0000076!4.20e-08!62;CL:0000066!4.32e-08!254 | |||
|ontology_enrichment_celltype_v019=CL:0002251;1.32e-12;20!CL:1000415;8.41e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002251,1.36e-12,20;CL:1000415,8.09e-09,2;CL:0000076,1.33e-08,63 | |||
|ontology_enrichment_development_v019=UBERON:0008814;4.34e-09;2!UBERON:0010056;4.34e-09;2 | |||
|ontology_enrichment_disease=DOID:1749!2.50e-39!14;DOID:305!6.32e-21!106;DOID:0050687!9.08e-15!143;DOID:162!1.29e-11!235;DOID:14566!2.64e-11!239;DOID:3151!2.59e-10!1;DOID:3149!2.59e-10!1;DOID:7!2.66e-10!39 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.49e-39;14!DOID:3151;1.12e-16;1!DOID:3149;1.12e-16;1!DOID:3451;5.28e-09;2!DOID:4159;5.28e-09;2!DOID:0060122;5.28e-09;2!DOID:4074;6.94e-09;2!DOID:4905;6.94e-09;2!DOID:3498;6.94e-09;2!DOID:7;1.10e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.41e-39,14;DOID:3151,1.04e-16,1;DOID:3149,1.04e-16,1;DOID:305,2.05e-16,106;DOID:0050687,6.66e-12,143;DOID:7,7.51e-10,39;DOID:162,7.82e-10,235;DOID:14566,1.33e-09,239;DOID:3451,5.08e-09,2;DOID:4159,5.08e-09,2;DOID:0060122,5.08e-09,2;DOID:4074,7.49e-09,2;DOID:4905,7.49e-09,2;DOID:3498,7.49e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0003343!6.77e-21!4;UBERON:0004785!6.77e-21!4;UBERON:0003729!7.70e-17!5;UBERON:0002294!7.84e-12!7;UBERON:0001173!7.84e-12!7;UBERON:0004912!7.84e-12!7;UBERON:0000997!1.80e-10!1;UBERON:0005056!1.80e-10!1;UBERON:0002394!1.03e-09!4;UBERON:0003928!1.03e-09!4;UBERON:0000974!1.11e-08!10;UBERON:0004119!1.34e-07!169;UBERON:0000925!1.34e-07!169;UBERON:0006595!1.34e-07!169;UBERON:0000344!2.62e-07!12;UBERON:0001007!3.35e-07!155;UBERON:0001555!3.35e-07!155;UBERON:0007026!3.35e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0003343;2.23e-35;4!UBERON:0004785;2.23e-35;4!UBERON:0000974;7.53e-24;6!UBERON:0000997;5.53e-17;1!UBERON:0005056;5.53e-17;1!UBERON:0004176;5.53e-17;1!UBERON:0003729;2.30e-11;13!UBERON:0002294;1.38e-09;7!UBERON:0001173;1.38e-09;7!UBERON:0006562;8.41e-09;2!UBERON:0000161;5.95e-08;19!UBERON:0000166;5.95e-08;19!UBERON:0000344;1.40e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003343,2.36e-35,4;UBERON:0004785,2.36e-35,4;UBERON:0000997,5.53e-17,1;UBERON:0005056,5.53e-17,1;UBERON:0000974,1.41e-14,10;UBERON:0003729,2.34e-11,13;UBERON:0002294,1.17e-07,9;UBERON:0001173,1.17e-07,9;UBERON:0004912,1.17e-07,9;UBERON:0000344,1.42e-07,20;UBERON:0000166,6.22e-07,22 | |||
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|short_description=p@chr10:54259403..54259416,+ | |||
}} | }} |
Latest revision as of 14:10, 23 July 2015
Short description: | p@chr10:54259403..54259416, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:54259403..54259416, + |
Coexpression cluster: | C234_oral_epidermoid_malignant_cervical_ductal_lung_keratoacanthoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of alimentary canal | 1.36e-12 | 20 |
epithelial cell of gall bladder | 8.09e-09 | 2 |
squamous epithelial cell | 1.33e-08 | 63 |
Ontology term | p-value | n |
---|---|---|
mucosa of oral region | 2.36e-35 | 4 |
respiratory system mucosa | 2.36e-35 | 4 |
mammalian vulva | 5.53e-17 | 1 |
external female genitalia | 5.53e-17 | 1 |
neck | 1.41e-14 | 10 |
mouth mucosa | 2.34e-11 | 13 |
biliary system | 1.17e-07 | 9 |
biliary tree | 1.17e-07 | 9 |
biliary bud | 1.17e-07 | 9 |
mucosa | 1.42e-07 | 20 |
oral opening | 6.22e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.41e-39 | 14 |
skin squamous cell carcinoma | 1.04e-16 | 1 |
keratoacanthoma | 1.04e-16 | 1 |
carcinoma | 2.05e-16 | 106 |
cell type cancer | 6.66e-12 | 143 |
disease of anatomical entity | 7.51e-10 | 39 |
cancer | 7.82e-10 | 235 |
disease of cellular proliferation | 1.33e-09 | 239 |
skin carcinoma | 5.08e-09 | 2 |
skin cancer | 5.08e-09 | 2 |
integumentary system cancer | 5.08e-09 | 2 |
pancreas adenocarcinoma | 7.49e-09 | 2 |
pancreatic carcinoma | 7.49e-09 | 2 |
pancreatic ductal adenocarcinoma | 7.49e-09 | 2 |