FFCP PHASE1:Hg19::chr12:52908434..52908443,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:52908434..52908443,- | |||
|coexpression_cluster_id=C405 | |||
|description=CAGE_peak_at_chr12:52908434..52908443,- | |description=CAGE_peak_at_chr12:52908434..52908443,- | ||
|id=chr12:52908434..52908443,- | |id=chr12:52908434..52908443,- | ||
|ontology_enrichment_celltype=CL:0002076!3.80e-35!43;CL:0002251!3.77e-29!21;CL:0000223!3.50e-24!59;CL:0000066!7.79e-16!254;CL:0002368!8.07e-14!13;CL:0002621!2.52e-13!3;CL:0000349!4.64e-13!3;CL:0002577!4.64e-13!3;CL:0002623!1.42e-12!3;CL:0000076!7.24e-11!62;CL:0000575!3.34e-09!2;CL:0000622!1.03e-07!5;CL:0000240!5.16e-07!6;CL:0000311!5.16e-07!6;CL:0000079!5.16e-07!6;CL:0000237!5.16e-07!6;CL:0000036!5.16e-07!6;CL:0000357!5.16e-07!6;CL:0000114!5.16e-07!6 | |ontology_enrichment_celltype=CL:0002076!3.80e-35!43;CL:0002251!3.77e-29!21;CL:0000223!3.50e-24!59;CL:0000066!7.79e-16!254;CL:0002368!8.07e-14!13;CL:0002621!2.52e-13!3;CL:0000349!4.64e-13!3;CL:0002577!4.64e-13!3;CL:0002623!1.42e-12!3;CL:0000076!7.24e-11!62;CL:0000575!3.34e-09!2;CL:0000622!1.03e-07!5;CL:0000240!5.16e-07!6;CL:0000311!5.16e-07!6;CL:0000079!5.16e-07!6;CL:0000237!5.16e-07!6;CL:0000036!5.16e-07!6;CL:0000357!5.16e-07!6;CL:0000114!5.16e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000240;7.52e-24;6!CL:0000311;7.52e-24;6!CL:0000079;7.52e-24;6!CL:0000237;7.52e-24;6!CL:0002621;1.86e-21;3!CL:0002577;3.27e-21;3!CL:0002336;5.52e-17;1!CL:0002261;5.52e-17;1!CL:0002170;5.52e-17;1!CL:0002252;1.53e-16;1!CL:0000312;2.44e-13;5!CL:0002251;1.24e-12;20!CL:0002159;1.67e-10;14!CL:0000575;6.17e-09;2!CL:0002076;1.84e-08;42!CL:0000362;8.17e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000240,7.24e-24,6;CL:0000311,7.24e-24,6;CL:0000079,7.24e-24,6;CL:0000237,7.24e-24,6;CL:0000036,7.24e-24,6;CL:0000357,7.24e-24,6;CL:0000114,7.24e-24,6;CL:0002621,1.59e-21,3;CL:0002577,2.67e-21,3;CL:0002336,5.53e-17,1;CL:0002261,5.53e-17,1;CL:0002170,5.53e-17,1;CL:0002252,1.65e-16,1;CL:0000312,2.37e-13,5;CL:0002251,1.20e-12,20;CL:0002159,1.52e-10,14;CL:0002076,3.36e-09,42;CL:0000575,5.08e-09,2;CL:0000362,8.03e-08,9 | |||
|ontology_enrichment_development_v019=CL:0000357;7.52e-24;6!CL:0000114;7.52e-24;6!UBERON:0008814;6.17e-09;2!UBERON:0010056;6.17e-09;2 | |||
|ontology_enrichment_disease=DOID:1749!1.59e-25!14 | |ontology_enrichment_disease=DOID:1749!1.59e-25!14 | ||
|ontology_enrichment_disease_v019=DOID:3151;1.53e-16;1!DOID:3149;1.53e-16;1!DOID:3451;6.17e-09;2!DOID:4159;6.17e-09;2!DOID:0060122;6.17e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,3.07e-16,1;DOID:3149,3.07e-16,1;DOID:3451,8.74e-09,2;DOID:4159,8.74e-09,2;DOID:0060122,8.74e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0000166!1.98e-24!21;UBERON:0000165!4.90e-21!28;UBERON:0000930!4.90e-21!28;UBERON:0001004!1.49e-20!72;UBERON:0003729!2.58e-19!5;UBERON:0000161!1.37e-18!35;UBERON:0000974!2.17e-17!10;UBERON:0004119!4.10e-17!169;UBERON:0000925!4.10e-17!169;UBERON:0006595!4.10e-17!169;UBERON:0003343!2.46e-15!4;UBERON:0004785!2.46e-15!4;UBERON:0001444!3.99e-15!48;UBERON:0000344!1.37e-14!12;UBERON:0001949!2.52e-13!3;UBERON:0003102!7.60e-12!95;UBERON:0006562!1.29e-11!11;UBERON:0001987!6.68e-10!4;UBERON:0004340!6.68e-10!4;UBERON:0003408!2.11e-09!10;UBERON:0000065!2.88e-09!53;UBERON:0001042!3.98e-09!10;UBERON:0009145!3.98e-09!10;UBERON:0001007!1.40e-08!155;UBERON:0001555!1.40e-08!155;UBERON:0007026!1.40e-08!155;UBERON:0000365!2.33e-07!5;UBERON:0004923!2.68e-07!57;UBERON:0000078!3.48e-07!18;UBERON:0005631!5.12e-07!14;UBERON:0000158!5.12e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;1.86e-21;3!UBERON:0001987;3.58e-16;4!UBERON:0003729;2.46e-11;13!UBERON:0003929;9.31e-10;7!UBERON:0000165;4.20e-09;28!UBERON:0003350;1.19e-08;8!UBERON:0001828;1.19e-08;8!UBERON:0010371;3.44e-08;31!UBERON:0000344;1.46e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.59e-21,3;UBERON:0001987,3.07e-16,4;UBERON:0004340,3.07e-16,4;UBERON:0003729,2.34e-11,13;UBERON:0003124,1.09e-09,7;UBERON:0003102,2.89e-09,99;UBERON:0000165,8.84e-09,29;UBERON:0000930,8.84e-09,29;UBERON:0003350,1.13e-08,8;UBERON:0001828,1.13e-08,8;UBERON:0001444,7.46e-08,49;UBERON:0000344,1.42e-07,20;UBERON:0000033,7.28e-07,56;UBERON:0000166,7.63e-07,22 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45718115317017,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31913023795956,0.545492241181669,1.43402297694502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.6942908134335,0,1.40740561376283,4.16648003213383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447792613514241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21251028578504,1.66435439510497,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0.192190067365106,0.255225424989168,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53955380360819,0,0,0,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.95497793895076,0,0,0,0,0,0,0.422250816255987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.975966209950223,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0.0870592065804026,0,0,0,0,0,0.581934098930517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0063040627978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392590874004102,0.235939446695481,0.183428598521679,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.85359238546975,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535661815816973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0.193766729508018,0.0620747142958579,0,0,0,1.08858373948481,0,0.0673520530145875,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:52908434..52908443,- | |short_description=p@chr12:52908434..52908443,- | ||
}} | }} |
Latest revision as of 09:34, 24 July 2015
Short description: | p@chr12:52908434..52908443, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52908434..52908443, - |
Coexpression cluster: | C405_Keratinocyte_Mammary_Sebocyte_tongue_Corneal_Mallassezderived_Gingival |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
stratified squamous epithelial cell | 7.24e-24 | 6 |
keratin accumulating cell | 7.24e-24 | 6 |
stratified epithelial cell | 7.24e-24 | 6 |
keratinizing barrier epithelial cell | 7.24e-24 | 6 |
epithelial fate stem cell | 7.24e-24 | 6 |
stratified epithelial stem cell | 7.24e-24 | 6 |
surface ectodermal cell | 7.24e-24 | 6 |
gingival epithelial cell | 1.59e-21 | 3 |
placental epithelial cell | 2.67e-21 | 3 |
buccal mucosa cell | 5.53e-17 | 1 |
endothelial cell of viscerocranial mucosa | 5.53e-17 | 1 |
keratinized cell of the oral mucosa | 5.53e-17 | 1 |
epithelial cell of esophagus | 1.65e-16 | 1 |
keratinocyte | 2.37e-13 | 5 |
epithelial cell of alimentary canal | 1.20e-12 | 20 |
general ecto-epithelial cell | 1.52e-10 | 14 |
endo-epithelial cell | 3.36e-09 | 42 |
corneal epithelial cell | 5.08e-09 | 2 |
epidermal cell | 8.03e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 1.59e-21 | 3 |
placenta | 3.07e-16 | 4 |
allantois | 3.07e-16 | 4 |
mouth mucosa | 2.34e-11 | 13 |
chorion | 1.09e-09 | 7 |
surface structure | 2.89e-09 | 99 |
mouth | 8.84e-09 | 29 |
stomodeum | 8.84e-09 | 29 |
epithelium of mucosa | 1.13e-08 | 8 |
gingiva | 1.13e-08 | 8 |
subdivision of head | 7.46e-08 | 49 |
mucosa | 1.42e-07 | 20 |
head | 7.28e-07 | 56 |
oral opening | 7.63e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 3.07e-16 | 1 |
keratoacanthoma | 3.07e-16 | 1 |
skin carcinoma | 8.74e-09 | 2 |
skin cancer | 8.74e-09 | 2 |
integumentary system cancer | 8.74e-09 | 2 |