FFCP PHASE1:Hg19::chr17:70120019..70120033,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:70120019..70120033,+ | |||
|description=CAGE_peak_at_chr17:70120019..70120033,+ | |description=CAGE_peak_at_chr17:70120019..70120033,+ | ||
|id=chr17:70120019..70120033,+ | |id=chr17:70120019..70120033,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000047;7.07e-34;2!CL:0000228;7.36e-18;1!CL:0002372;7.36e-18;1!CL:0000062;2.12e-08;9!CL:0002178;8.14e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000228,4.44e-18,1;CL:0002372,4.44e-18,1;CL:0000047,3.55e-09,8;CL:0000062,5.64e-07,11;CL:0000375,5.64e-07,11;CL:0000335,5.64e-07,11;CL:0002178,6.50e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000335;5.00e-07;11!UBERON:0004161;5.98e-07;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3493;1.33e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,9.46e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.23e-19!115;UBERON:0001049!2.46e-15!57;UBERON:0005068!2.46e-15!57;UBERON:0006241!2.46e-15!57;UBERON:0007135!2.46e-15!57;UBERON:0001893!6.73e-14!34;UBERON:0001017!1.42e-13!82;UBERON:0003075!1.62e-13!86;UBERON:0007284!1.62e-13!86;UBERON:0002791!2.43e-13!33;UBERON:0002346!3.78e-13!90;UBERON:0005743!3.84e-13!86;UBERON:0000073!4.76e-13!94;UBERON:0001016!4.76e-13!94;UBERON:0002780!6.36e-13!41;UBERON:0001890!6.36e-13!41;UBERON:0006240!6.36e-13!41;UBERON:0002020!1.14e-12!34;UBERON:0003528!1.14e-12!34;UBERON:0004111!1.28e-12!241;UBERON:0003080!1.92e-12!42;UBERON:0001869!2.48e-12!32;UBERON:0004121!9.13e-12!169;UBERON:0000025!1.02e-11!194;UBERON:0000924!1.17e-11!173;UBERON:0006601!1.17e-11!173;UBERON:0002616!3.24e-11!59;UBERON:0000475!1.49e-10!365;UBERON:0000033!4.23e-10!123;UBERON:0000477!4.56e-10!286;UBERON:0000119!5.87e-10!312;UBERON:0000955!8.12e-10!69;UBERON:0006238!8.12e-10!69;UBERON:0000483!9.22e-10!309;UBERON:0000153!9.37e-10!129;UBERON:0007811!9.37e-10!129;UBERON:0002619!1.02e-09!22;UBERON:0000481!1.92e-09!347;UBERON:0003056!2.18e-09!61;UBERON:0001950!2.79e-09!20;UBERON:0002420!5.93e-09!9;UBERON:0007245!5.93e-09!9;UBERON:0010009!5.93e-09!9;UBERON:0010011!5.93e-09!9;UBERON:0000454!5.93e-09!9;UBERON:0000956!4.17e-08!25;UBERON:0000203!4.17e-08!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0001874;7.36e-18;1!UBERON:0001954;1.33e-09;2!UBERON:0003022;1.33e-09;2!UBERON:0002421;1.33e-09;2!UBERON:0002600;1.33e-09;2!UBERON:0005383;8.14e-07;3!UBERON:0005382;8.14e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001874,8.72e-18,1;UBERON:0001954,1.57e-09,2;UBERON:0003022,1.57e-09,2;UBERON:0002421,1.57e-09,2;UBERON:0002600,1.57e-09,2;UBERON:0005383,8.62e-07,3;UBERON:0005382,8.62e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0.152826811495903,0.246301768349837,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,1.5905718941022,0.973269740605272,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0.309977343527296,0,0,0,0,0,0.125118519871964,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0.122988438543114,0.171567810298526,0.548751427043128,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.425325291727159,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0,0,0,0,0,0,1.42636905040718,0,0,0,0,0,0,0,1.01637849688985,1.30139853857622,0.773288812777695,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,2.27407504055985,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0,0,0.160853921143607,0,0.462629081407967,0,0,0,0,0.846016147141356,0.802025881213139,0.184161977871793,0,0.182091168006717,0,0.902399225814824,0,0.784349769176855,0,0,0,0,0,0,0.270946437543853,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0,0.0915694648183434,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532306030317022,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0.438450885253763,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0.699869440489966,0,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.852408440419239,0.47748896947538,0,0,0.994147647766298,0.281338832821026,0,0,0,0.398495976502139,0.552567831062295,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0.508507300585533,0,0,0,0,0.885741385813839,0.60298219312704,0,0.774054819518572,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.432777279484182,0,0.176915129006678,0,0,0,0,0.202203398942031,0,0.468528891450678,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0.277349346026277,0,0.293977192243133,0.0870592065804026,0,0,0,0,0,0.581934098930517,0.794305140223502,0.225980740780532,0,0,0.253243183823515,0.195551382734803,0,0.640358984218058,0.19980960958213,0.288180834308212,0,0,0.14405479798815,0.248505071130865,0.235694034616795,0,0,0,0.288950589901519,0,0.410716136675979,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0.223171457441873,0.0671834724867263,0,1.16495949527454,0.945398187686684,0.906574442192831,1.14586024552114,0.0984274815147488,0,0,1.0896272488926,0,0,0,0,0,0.182248669974074,0,0.472834243795189,0.104909176269996,0.105600336519406,0.179287339332845,0.191915197319445,0,0,0.25426853765475,0,0,0,0,0,0,0.226624183040251,0.146552233678082,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0.610131324509816,0.876336514945499,0,0.332787154610557,0.310482014706917,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0.179088841081487,0,0,0.176689145945881,0,0,0.256241518587947,0,0,0.691292180758654,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0.323474434190045,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0.319267718114302,0.615349092722265,0,0.207471757392654,0.161475645631851,0,0,0,0,0.231051332300676,0,0,0,0.225630985047772,0,0,0,0,0.887136517302272,0.0675375846183947,0,0,0.253663240775627,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0.342976018874837,0.203909198930495,0.328863867814245,0,0,0.156986185701028,1.09980912941201,0,0,0.215927591218621,0,0.0714765441766563,0,0.116241425368125,0.173858272302579,0,0,0,0,0,0.118332000730565,0.0852134047591577,0.846774100381858,0,0,0,0,1.47225350422864,0.487671699929078,0,0,0,0,0,0.198950775161368,0,0,0,0,0.0771741581079447,0.437119121007915,0.470317296361523,0,0,0.196308467114945,0.297046400327086,0.8453114551668,0,0,0,0,0,0,0.240724100067505,0,0.917458566809082,0.286679166302903,0.157771562193185,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0.18378979906969,0,1.06090177505535,0.267964130156178,0,0.413731983447581,0.639701945702943,0,0,0,0,0,0.202117188958219,0.217716747896961,0,0.0673520530145875,0.502055437748735,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0.152826811495903,0.246301768349837,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,1.5905718941022,0.973269740605272,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0.309977343527296,0,0,0,0,0,0.125118519871964,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0.122988438543114,0.171567810298526,0.548751427043128,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0.425325291727159,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0,0,0,0,0,0,1.42636905040718,0,0,0,0,0,0,0,1.01637849688985,1.30139853857622,0.773288812777695,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,2.27407504055985,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0,0,0.160853921143607,0,0.462629081407967,0,0,0,0,0.846016147141356,0.802025881213139,0.184161977871793,0,0.182091168006717,0,0.902399225814824,0,0.784349769176855,0,0,0,0,0,0,0.270946437543853,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0,0.0915694648183434,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.532306030317022,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0.438450885253763,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0.699869440489966,0,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.852408440419239,0.47748896947538,0,0,0.994147647766298,0.281338832821026,0,0,0,0.398495976502139,0.552567831062295,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0.371072392647405,0,0,0,0,0,0.508507300585533,0,0,0,0,0.885741385813839,0.60298219312704,0,0.774054819518572,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.432777279484182,0,0.176915129006678,0,0,0,0,0.202203398942031,0,0.468528891450678,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0.277349346026277,0,0.293977192243133,0.0870592065804026,0,0,0,0,0,0.581934098930517,0.794305140223502,0.225980740780532,0,0,0.253243183823515,0.195551382734803,0,0.640358984218058,0.19980960958213,0.288180834308212,0,0,0.14405479798815,0.248505071130865,0.235694034616795,0,0,0,0.288950589901519,0,0.410716136675979,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0.223171457441873,0.0671834724867263,0,1.16495949527454,0.945398187686684,0.906574442192831,1.14586024552114,0.0984274815147488,0,0,1.0896272488926,0,0,0,0,0,0.182248669974074,0,0.472834243795189,0.104909176269996,0.105600336519406,0.179287339332845,0.191915197319445,0,0,0.25426853765475,0,0,0,0,0,0,0.226624183040251,0.146552233678082,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0.610131324509816,0.876336514945499,0,0.332787154610557,0.310482014706917,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0.179088841081487,0,0,0.176689145945881,0,0,0.256241518587947,0,0,0.691292180758654,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0.323474434190045,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0.319267718114302,0.615349092722265,0,0.207471757392654,0.161475645631851,0,0,0,0,0.231051332300676,0,0,0,0.225630985047772,0,0,0,0,0.887136517302272,0.0675375846183947,0,0,0.253663240775627,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0.342976018874837,0.203909198930495,0.328863867814245,0,0,0.156986185701028,1.09980912941201,0,0,0.215927591218621,0,0.0714765441766563,0,0.116241425368125,0.173858272302579,0,0,0,0,0,0.118332000730565,0.0852134047591577,0.846774100381858,0,0,0,0,1.47225350422864,0.487671699929078,0,0,0,0,0,0.198950775161368,0,0,0,0,0.0771741581079447,0.437119121007915,0.470317296361523,0,0,0.196308467114945,0.297046400327086,0.8453114551668,0,0,0,0,0,0,0.240724100067505,0,0.917458566809082,0.286679166302903,0.157771562193185,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0.18378979906969,0,1.06090177505535,0.267964130156178,0,0.413731983447581,0.639701945702943,0,0,0,0,0,0.202117188958219,0.217716747896961,0,0.0673520530145875,0.502055437748735,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr17:70120019..70120033,+ | |short_description=p@chr17:70120019..70120033,+ | ||
}} | }} |
Latest revision as of 20:31, 25 July 2015
Short description: | p@chr17:70120019..70120033, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:70120019..70120033, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multinucleate cell | 4.44e-18 | 1 |
myotube | 4.44e-18 | 1 |
neuronal stem cell | 3.55e-09 | 8 |
osteoblast | 5.64e-07 | 11 |
osteoprogenitor cell | 5.64e-07 | 11 |
mesenchyme condensation cell | 5.64e-07 | 11 |
epithelial cell of stomach | 6.50e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
putamen | 8.72e-18 | 1 |
Ammon's horn | 1.57e-09 | 2 |
lobe parts of cerebral cortex | 1.57e-09 | 2 |
hippocampal formation | 1.57e-09 | 2 |
limbic lobe | 1.57e-09 | 2 |
caudate-putamen | 8.62e-07 | 3 |
dorsal striatum | 8.62e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 9.46e-10 | 2 |