FFCP PHASE1:Hg19::chr12:54410664..54410684,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3221,3223,3222 | |EntrezGene=3221,3223,3222 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5126,5128,5127 | |HGNC=5126,5128,5127 | ||
|TSSclassifier=strong | |||
|UniProt=P09017,Q86TF7,P09630 | |UniProt=P09017,Q86TF7,P09630 | ||
|association_with_transcript=22bp_to_NM_014620,NM_153693,NR_003084,uc001ses.2,uc001set.2,uc001seu.2_5end | |association_with_transcript=22bp_to_NM_014620,NM_153693,NR_003084,uc001ses.2,uc001set.2,uc001seu.2_5end | ||
|cluster_id=chr12:54410664..54410684,+ | |||
|coexpression_cluster_id=C1362 | |||
|description=CAGE_peak_1_at_HOXC4_5end,CAGE_peak_1_at_HOXC5_5end,CAGE_peak_1_at_HOXC6_5end | |description=CAGE_peak_1_at_HOXC4_5end,CAGE_peak_1_at_HOXC5_5end,CAGE_peak_1_at_HOXC6_5end | ||
|id=chr12:54410664..54410684,+ | |id=chr12:54410664..54410684,+ | ||
|ontology_enrichment_celltype=CL:0000055!9.87e-12!180;CL:0002620!1.47e-10!23;CL:0000136!5.74e-09!15;CL:0002334!5.96e-08!12;CL:0000057!1.41e-07!75 | |ontology_enrichment_celltype=CL:0000055!9.87e-12!180;CL:0002620!1.47e-10!23;CL:0000136!5.74e-09!15;CL:0002334!5.96e-08!12;CL:0000057!1.41e-07!75 | ||
|ontology_enrichment_celltype_v019=CL:0002620;1.03e-11;23!CL:0000136;1.68e-08;13!CL:0002334;3.81e-08;12!CL:0002570;5.95e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,1.11e-11,23;CL:0000136,4.32e-10,15;CL:0002334,3.98e-08,12;CL:0000057,6.78e-08,76;CL:0002570,5.97e-07,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.87e-08!143;DOID:14566!7.86e-07!239 | |ontology_enrichment_disease=DOID:0050687!1.87e-08!143;DOID:14566!7.86e-07!239 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002199!1.07e-10!45;UBERON:0002416!1.07e-10!45;UBERON:0001013!1.30e-09!14;UBERON:0002097!1.43e-08!40;UBERON:0003886!1.16e-07!63;UBERON:0002113!7.12e-07!27;UBERON:0003918!7.12e-07!27;UBERON:0005095!7.12e-07!27;UBERON:0007687!7.12e-07!27;UBERON:0000489!7.47e-07!32;UBERON:0002100!9.55e-07!216 | |ontology_enrichment_uberon=UBERON:0002199!1.07e-10!45;UBERON:0002416!1.07e-10!45;UBERON:0001013!1.30e-09!14;UBERON:0002097!1.43e-08!40;UBERON:0003886!1.16e-07!63;UBERON:0002113!7.12e-07!27;UBERON:0003918!7.12e-07!27;UBERON:0005095!7.12e-07!27;UBERON:0007687!7.12e-07!27;UBERON:0000489!7.47e-07!32;UBERON:0002100!9.55e-07!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0001013;7.73e-11;14!UBERON:0001134;5.70e-09;16!UBERON:0002036;5.70e-09;16!UBERON:0002199;2.62e-08;46!UBERON:0002416;2.62e-08;46!UBERON:0002097;6.16e-08;41!UBERON:0004457;1.18e-07;9!UBERON:0000042;1.18e-07;9!UBERON:0004905;8.45e-07;8!UBERON:0000982;8.45e-07;8!UBERON:0004770;8.45e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,6.35e-13,46;UBERON:0002416,6.35e-13,46;UBERON:0001013,7.83e-11,14;UBERON:0002097,1.96e-10,41;UBERON:0002113,6.01e-07,26;UBERON:0003918,6.01e-07,26;UBERON:0011143,6.01e-07,26;UBERON:0005095,6.01e-07,26;UBERON:0007687,6.01e-07,26;UBERON:0004905,8.41e-07,8;UBERON:0000982,8.41e-07,8;UBERON:0004770,8.41e-07,8;UBERON:0003104,9.77e-07,160;UBERON:0009142,9.77e-07,160 | |||
|phase1_expression=128.809970902825,58.6635435461294,34.251920195321,90.0659685178174,27.2646267600646,73.276436024431,17.7309914717817,24.0053551902196,33.1705747813795,0.982935746006035,0,0,0,42.3280927123359,30.8199559426962,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23852898652861,0,0,0,0.0774672005803016,0,0,1.10799081706375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,37.5896718479949,42.1123844934147,28.6796107542431,3.9764297352555,5.35298357332899,0,0,0,5.50112117090393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0.760272105718513,0.24406205754817,0,0,0,0,0,1.53316637465883,0,0.916008719652036,0,0,0,45.7214195559693,0.25326102332916,3.57504788195691,0.286836620748814,1.06400514659507,0,0,0.74000264525148,0,0.134710672069688,0,0,0,0,0,0,18.5316363884233,32.4119216256791,26.7090358207417,25.8429484332137,0,0,0,0,0,113.770170242253,80.4852318834187,0,0,0,0,0,0.150238058906597,0.340296549480063,54.1756699780363,58.9418393139246,18.861939203201,30.3092007045246,23.2898716078872,113.104197080031,91.9417270278054,119.324866894575,126.862980719881,50.9916223973111,50.3512945573377,0.161646056818812,51.8314005074257,36.976020049544,26.9601341773675,0,0,0,0,0,0.232387885739037,0.10366105501537,1.00928340350251,0,0,0,0,21.825292617503,7.94067429836544,4.14073800139454,2.02301628093722,3.37415441836875,3.08823123650703,3.26819166138609,2.60997681022206,1.8876383142423,3.72820783738158,1.15424147083917,0,7.01208869017229,2.057870056657,2.94017422771084,0,0,0,0,12.1758554157682,0,1.75600456653801,0,1.50793458617446,0,0,0,1.44331342025273,0,0,0.288732895522148,0,0,0.790204397959275,0,0,0,0,0,0,0,4.83616022595381,3.48760726216754,2.30029607499127,0,0,0,0,0.37872730027914,15.8744735730423,17.9534560012391,12.8939191931052,20.5286935227246,9.15164685059579,10.2116639666932,9.1464458441785,0,0,0,28.5690491824689,71.5312891703765,7.607724773004,0.531876233169741,2.08014873822732,27.5211890460492,26.9513350844229,18.9159747101431,0.142977993658148,82.4784840194993,41.9852571758192,10.4235578973995,0,12.6712299669349,0.602878754119172,1.74306691720059,1.09970290300263,0,0,0,0,0,15.690059554479,32.5757940002053,38.6295486394721,66.0734954355215,0,0,0,0,0,0,0,0,0,0,0,0,45.64123491952,37.5127890794758,27.1265023699736,0,0,0.157702415033935,0,13.2416283880196,22.7407504055985,22.7640756843511,37.1966335179844,4.24049087645917,4.86548241021264,0,0.343143423810856,0,0,0,0,0,0.907170879989041,158.29278138838,122.616116657162,89.8112302185835,26.6529430451858,133.55559200641,37.1572557841733,66.7881299002459,24.0567122332143,17.7561725313127,26.7734528605018,0.519254429183621,17.3153463905339,14.0196961526282,0.40101294060657,0,0,0.182091168006717,0,6.31679458070376,3.31165949548983,27.4522419211899,7.30696123266303,7.70526890917993,1.13733384070897,0,4.53423423814493,7.71136263451447,35.4939833182447,28.5963171097266,4.58777291481069,0.831076008928724,8.50724067944278,0,0,0,0,0,3.81251743096572,15.6583784839367,19.7197704810205,3.44559322797703,4.55042172225565,25.7094287750655,54.715626553341,5.69979883324184,4.91211759123615,11.164762371247,38.2416071731054,25.8129715167327,17.8975917573812,32.3186289397657,0,0,0,0.10115778085555,0.464845549297286,0,0,33.2676266590176,0,0,0,0,0.744316738719335,0.316379424718726,0,1.02359116524534,0.42793898803392,0,0,0.539617372749944,0.54907405947211,0.353437207037059,0.202182481573316,0,0,0,13.6479554193519,19.017026416216,0.136499911407986,0.282810863907425,0,0,0,0,1.15755106853338,0.655894752046633,11.9717122407995,6.196469961995,14.3664757291443,42.3063489001952,54.7247158443085,8.91677628703126,0,10.7664894001809,45.7719901214264,0,0,0,0,0,3.38917682796405,0,0,0,0,0,0,0,0,0,0,0,0,13.993953317699,2.88743956579008,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,7.51903431270201,0,0.321176150207399,0,0,0,0,0,0,11.5278976287204,0,0,0,0,0,3.36852972734796,20.9506696358808,4.85442086998054,0,26.4246616529964,0.47748896947538,2.67268212749375,0,0,0,0,0.329607748453519,15.4121547933435,6.17668763578316,1.38141957765574,10.8331081577339,2.14764233254525,0,0,0.0898683511473268,0.179021174675609,0,2.66337195219721,0,14.4478087188028,0,0,0,0.260427761085233,1.48681999993533,18.8499889613046,0,0,1.41832609060762,0,8.16492917473112,27.4327491994602,0,0.120596438625408,0,0,0,0,8.71507708151921,3.62501735124369,2.15460723810632,0,0,0,0.108647371922008,0.31900115973192,3.29751336246704,0,0,0,0,0,0,0,0,0,0,0,3.1097675715467,19.042200297304,0,1.68069372556344,14.0536933334734,0,0,0,0.067401132980677,2.40773294189637,0,0,0.782658475728359,2.91336455440911,0.789168805698781,2.41981432097328,0,0,9.47037542311303,22.9150902987916,0,0.330991955875499,0.313932918407225,0,2.27687636823834,29.953729370838,0,0.881931576729399,0.0870592065804026,21.3166535255277,33.0213182345504,4.93457289574334,9.64778985537649,4.762696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| |phase1_expression=128.809970902825,58.6635435461294,34.251920195321,90.0659685178174,27.2646267600646,73.276436024431,17.7309914717817,24.0053551902196,33.1705747813795,0.982935746006035,0,0,0,42.3280927123359,30.8199559426962,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23852898652861,0,0,0,0.0774672005803016,0,0,1.10799081706375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,37.5896718479949,42.1123844934147,28.6796107542431,3.9764297352555,5.35298357332899,0,0,0,5.50112117090393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0.760272105718513,0.24406205754817,0,0,0,0,0,1.53316637465883,0,0.916008719652036,0,0,0,45.7214195559693,0.25326102332916,3.57504788195691,0.286836620748814,1.06400514659507,0,0,0.74000264525148,0,0.134710672069688,0,0,0,0,0,0,18.5316363884233,32.4119216256791,26.7090358207417,25.8429484332137,0,0,0,0,0,113.770170242253,80.4852318834187,0,0,0,0,0,0.150238058906597,0.340296549480063,54.1756699780363,58.9418393139246,18.861939203201,30.3092007045246,23.2898716078872,113.104197080031,91.9417270278054,119.324866894575,126.862980719881,50.9916223973111,50.3512945573377,0.161646056818812,51.8314005074257,36.976020049544,26.9601341773675,0,0,0,0,0,0.232387885739037,0.10366105501537,1.00928340350251,0,0,0,0,21.825292617503,7.94067429836544,4.14073800139454,2.02301628093722,3.37415441836875,3.08823123650703,3.26819166138609,2.60997681022206,1.8876383142423,3.72820783738158,1.15424147083917,0,7.01208869017229,2.057870056657,2.94017422771084,0,0,0,0,12.1758554157682,0,1.75600456653801,0,1.50793458617446,0,0,0,1.44331342025273,0,0,0.288732895522148,0,0,0.790204397959275,0,0,0,0,0,0,0,4.83616022595381,3.48760726216754,2.30029607499127,0,0,0,0,0.37872730027914,15.8744735730423,17.9534560012391,12.8939191931052,20.5286935227246,9.15164685059579,10.2116639666932,9.1464458441785,0,0,0,28.5690491824689,71.5312891703765,7.607724773004,0.531876233169741,2.08014873822732,27.5211890460492,26.9513350844229,18.9159747101431,0.142977993658148,82.4784840194993,41.9852571758192,10.4235578973995,0,12.6712299669349,0.602878754119172,1.74306691720059,1.09970290300263,0,0,0,0,0,15.690059554479,32.5757940002053,38.6295486394721,66.0734954355215,0,0,0,0,0,0,0,0,0,0,0,0,45.64123491952,37.5127890794758,27.1265023699736,0,0,0.157702415033935,0,13.2416283880196,22.7407504055985,22.7640756843511,37.1966335179844,4.24049087645917,4.86548241021264,0,0.343143423810856,0,0,0,0,0,0.907170879989041,158.29278138838,122.616116657162,89.8112302185835,26.6529430451858,133.55559200641,37.1572557841733,66.7881299002459,24.0567122332143,17.7561725313127,26.7734528605018,0.519254429183621,17.3153463905339,14.0196961526282,0.40101294060657,0,0,0.182091168006717,0,6.31679458070376,3.31165949548983,27.4522419211899,7.30696123266303,7.70526890917993,1.13733384070897,0,4.53423423814493,7.71136263451447,35.4939833182447,28.5963171097266,4.58777291481069,0.831076008928724,8.50724067944278,0,0,0,0,0,3.81251743096572,15.6583784839367,19.7197704810205,3.44559322797703,4.55042172225565,25.7094287750655,54.715626553341,5.69979883324184,4.91211759123615,11.164762371247,38.2416071731054,25.8129715167327,17.8975917573812,32.3186289397657,0,0,0,0.10115778085555,0.464845549297286,0,0,33.2676266590176,0,0,0,0,0.744316738719335,0.316379424718726,0,1.02359116524534,0.42793898803392,0,0,0.539617372749944,0.54907405947211,0.353437207037059,0.202182481573316,0,0,0,13.6479554193519,19.017026416216,0.136499911407986,0.282810863907425,0,0,0,0,1.15755106853338,0.655894752046633,11.9717122407995,6.196469961995,14.3664757291443,42.3063489001952,54.7247158443085,8.91677628703126,0,10.7664894001809,45.7719901214264,0,0,0,0,0,3.38917682796405,0,0,0,0,0,0,0,0,0,0,0,0,13.993953317699,2.88743956579008,1.47024129588619,0,0,0,0,0,0,0,0,0,0,0,7.51903431270201,0,0.321176150207399,0,0,0,0,0,0,11.5278976287204,0,0,0,0,0,3.36852972734796,20.9506696358808,4.85442086998054,0,26.4246616529964,0.47748896947538,2.67268212749375,0,0,0,0,0.329607748453519,15.4121547933435,6.17668763578316,1.38141957765574,10.8331081577339,2.14764233254525,0,0,0.0898683511473268,0.179021174675609,0,2.66337195219721,0,14.4478087188028,0,0,0,0.260427761085233,1.48681999993533,18.8499889613046,0,0,1.41832609060762,0,8.16492917473112,27.4327491994602,0,0.120596438625408,0,0,0,0,8.71507708151921,3.62501735124369,2.15460723810632,0,0,0,0.108647371922008,0.31900115973192,3.29751336246704,0,0,0,0,0,0,0,0,0,0,0,3.1097675715467,19.042200297304,0,1.68069372556344,14.0536933334734,0,0,0,0.067401132980677,2.40773294189637,0,0,0.782658475728359,2.91336455440911,0.789168805698781,2.41981432097328,0,0,9.47037542311303,22.9150902987916,0,0.330991955875499,0.313932918407225,0,2.27687636823834,29.953729370838,0,0.881931576729399,0.0870592065804026,21.3166535255277,33.0213182345504,4.93457289574334,9.64778985537649,4.762696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| ||
|short_description=p1@HOXC4,p1@HOXC5,p1@HOXC6 | |short_description=p1@HOXC4,p1@HOXC5,p1@HOXC6 | ||
}} | }} |
Latest revision as of 04:53, 19 September 2015
Short description: | p1@HOXC4, p1@HOXC5, p1@HOXC6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXC4_5end, CAGE_peak_1_at_HOXC5_5end, CAGE_peak_1_at_HOXC6_5end |
Coexpression cluster: | C1362_Preadipocyte_Adipocyte_Fibroblast_Mesenchymal_mesenchymal_Myoblast_Smooth |
Association with transcript: | 22bp_to_NM_014620, NM_153693, NR_003084, uc001ses.2, uc001set.2, uc001seu.2_5end |
EntrezGene: | 3221,3223,3222 |
HGNC: | 5128, 5127&submit=Submit 5126, 5128, 5127 |
UniProt: | P09017Q86TF7P09630 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 1.11e-11 | 23 |
fat cell | 4.32e-10 | 15 |
preadipocyte | 3.98e-08 | 12 |
fibroblast | 6.78e-08 | 76 |
mesenchymal stem cell of adipose | 5.97e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
integument | 6.35e-13 | 46 |
integumental system | 6.35e-13 | 46 |
adipose tissue | 7.83e-11 | 14 |
skin of body | 1.96e-10 | 41 |
kidney | 6.01e-07 | 26 |
kidney mesenchyme | 6.01e-07 | 26 |
upper urinary tract | 6.01e-07 | 26 |
kidney rudiment | 6.01e-07 | 26 |
kidney field | 6.01e-07 | 26 |
articulation | 8.41e-07 | 8 |
skeletal joint | 8.41e-07 | 8 |
articular system | 8.41e-07 | 8 |
mesenchyme | 9.77e-07 | 160 |
entire embryonic mesenchyme | 9.77e-07 | 160 |