FFCP PHASE1:Hg19::chr19:38812519..38812533,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:38812519..38812533,- | |||
|coexpression_cluster_id=C470 | |||
|description=CAGE_peak_at_chr19:38812519..38812533,- | |description=CAGE_peak_at_chr19:38812519..38812533,- | ||
|id=chr19:38812519..38812533,- | |id=chr19:38812519..38812533,- | ||
|ontology_enrichment_celltype=CL:0000057!6.42e-11!75;CL:1000306!9.08e-09!4;CL:0002547!9.08e-09!4;CL:0000055!3.88e-08!180;CL:0002615!7.31e-08!3;CL:0002579!1.33e-07!3 | |ontology_enrichment_celltype=CL:0000057!6.42e-11!75;CL:1000306!9.08e-09!4;CL:0002547!9.08e-09!4;CL:0000055!3.88e-08!180;CL:0002615!7.31e-08!3;CL:0002579!1.33e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000136;2.55e-29;13!CL:0002615;7.73e-25;3!CL:0002579;9.22e-24;3!CL:0002334;1.26e-22;12!CL:0002617;1.17e-16;2!CL:0002580;5.42e-11;3!CL:0002616;1.60e-09;1!CL:0002581;2.13e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,2.64e-25,15;CL:0002615,8.06e-25,3;CL:0002579,7.31e-24,3;CL:0002334,1.39e-22,12;CL:0002617,1.17e-16,2;CL:0002580,7.36e-11,3;CL:0002616,1.60e-09,1;CL:0002581,2.04e-09,1;CL:0000057,1.88e-08,76 | |||
|ontology_enrichment_development_v019=UBERON:0010226;7.26e-09;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;3.60e-11;3!DOID:127;3.60e-11;3!DOID:2513;2.60e-09;1!DOID:3571;3.05e-09;1!DOID:0060072;1.35e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,2.78e-11,3;DOID:127,2.78e-11,3;DOID:2513,2.60e-09,1;DOID:3571,3.05e-09,1;DOID:0060072,1.12e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0003688!8.52e-14!6;UBERON:0002358!8.52e-14!6;UBERON:0003684!8.52e-14!6;UBERON:0001178!8.52e-14!6;UBERON:0004457!1.04e-13!12;UBERON:0000042!1.04e-13!12;UBERON:0000415!9.08e-09!4;UBERON:0007240!9.08e-09!4;UBERON:0005742!9.08e-09!4;UBERON:0005734!9.08e-09!4;UBERON:0004664!9.08e-09!4;UBERON:0004663!9.08e-09!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;8.91e-47;6!UBERON:0002358;8.91e-47;6!UBERON:0003684;8.91e-47;6!UBERON:0001178;8.91e-47;6!UBERON:0004457;4.49e-31;9!UBERON:0000042;4.49e-31;9!UBERON:0005406;3.43e-17;2!UBERON:0000310;1.69e-12;10!UBERON:0001443;2.23e-11;11!UBERON:0002084;7.26e-09;1!UBERON:0007195;7.26e-09;1!UBERON:0002082;7.26e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,7.35e-47,6;UBERON:0002358,7.35e-47,6;UBERON:0003684,7.35e-47,6;UBERON:0001178,7.35e-47,6;UBERON:0004457,3.00e-23,12;UBERON:0000042,3.00e-23,12;UBERON:0005406,3.30e-17,2;UBERON:0000310,2.03e-12,10;UBERON:0001443,2.62e-11,11;UBERON:0002084,7.27e-09,1;UBERON:0002082,7.27e-09,1;UBERON:0010226,7.27e-09,1;UBERON:0007195,1.07e-08,1 | |||
|phase1_expression=3.45188920614058,2.78330681058278,11.9811243481575,10.007329835313,8.49226079411847,13.9574163856059,7.59899634504932,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0.50133791063589,0.144846518960824,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0.993943903390637,0.886413581652058,0.662045904066094,1.43418310374407,0.354668382198357,0.560677600142307,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,1.22595118319608,0.300476117813194,0,0,0.427114777637135,0.211931901159562,0,0.103052529238439,0,1.48893485065272,0.168776332241266,0.779496041289589,0.252433774244115,0.0920498986422993,0,0.355009592516614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2276957863045,1.12264037773229,3.97231362692673,2.04682899626681,1.44768529029247,8.90508398669946,0,0,0,0,0,0,0,0.0920809889358963,0,0.182091168006717,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0.94443704049192,0,0,0.532306030317022,0,0,0.572499546967965,0,0,0.190630193923825,0.255897791311334,0,0.318203247925937,0,0,0.274537029736055,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0.844430541190656,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.3545542272653,0,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0.384751292518985,0,0,0,0,0,0.0915975934018623,0,0,0,0.332423363800313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0.858452096273142,0.223171457441873,0.470284307407084,3.96329871896644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32418394073086,0,2.17199840701485,1.72844298240254,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0.150257608997218,0,0.406870733204662,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0.381382095467167,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0.0887023701626388,0,0,0.0679697329768317,0.0657727735628491,0,0,0.156986185701028,0,0,1.82631744101899,0,0,0,0,0,0,0,0.414432328326074,0.3414369541879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0.469919589899268,0.644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244482888365733,0.813792356631477,0,0,0 | |phase1_expression=3.45188920614058,2.78330681058278,11.9811243481575,10.007329835313,8.49226079411847,13.9574163856059,7.59899634504932,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0.50133791063589,0.144846518960824,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0.993943903390637,0.886413581652058,0.662045904066094,1.43418310374407,0.354668382198357,0.560677600142307,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,1.22595118319608,0.300476117813194,0,0,0.427114777637135,0.211931901159562,0,0.103052529238439,0,1.48893485065272,0.168776332241266,0.779496041289589,0.252433774244115,0.0920498986422993,0,0.355009592516614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2276957863045,1.12264037773229,3.97231362692673,2.04682899626681,1.44768529029247,8.90508398669946,0,0,0,0,0,0,0,0.0920809889358963,0,0.182091168006717,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0.94443704049192,0,0,0.532306030317022,0,0,0.572499546967965,0,0,0.190630193923825,0.255897791311334,0,0.318203247925937,0,0,0.274537029736055,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0.844430541190656,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.3545542272653,0,0,0,0,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0.384751292518985,0,0,0,0,0,0.0915975934018623,0,0,0,0.332423363800313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0.858452096273142,0.223171457441873,0.470284307407084,3.96329871896644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32418394073086,0,2.17199840701485,1.72844298240254,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0.150257608997218,0,0.406870733204662,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0.381382095467167,0,0,0.225630985047772,0,0,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0.0887023701626388,0,0,0.0679697329768317,0.0657727735628491,0,0,0.156986185701028,0,0,1.82631744101899,0,0,0,0,0,0,0,0.414432328326074,0.3414369541879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0.469919589899268,0.644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244482888365733,0.813792356631477,0,0,0 | ||
|short_description=p@chr19:38812519..38812533,- | |short_description=p@chr19:38812519..38812533,- | ||
}} | }} |
Latest revision as of 07:19, 26 July 2015
Short description: | p@chr19:38812519..38812533, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:38812519..38812533, - |
Coexpression cluster: | C470_Adipocyte_Preadipocyte_Smooth_Fibroblast_aorta_normal_Mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 2.64e-25 | 15 |
adipocyte of omentum tissue | 8.06e-25 | 3 |
omentum preadipocyte | 7.31e-24 | 3 |
preadipocyte | 1.39e-22 | 12 |
adipocyte of breast | 1.17e-16 | 2 |
preadipocyte of the breast | 7.36e-11 | 3 |
perirenal adipocyte cell | 1.60e-09 | 1 |
perirenal preadipocyte | 2.04e-09 | 1 |
fibroblast | 1.88e-08 | 76 |
Ontology term | p-value | n |
---|---|---|
omentum | 7.35e-47 | 6 |
peritoneum | 7.35e-47 | 6 |
abdominal cavity | 7.35e-47 | 6 |
visceral peritoneum | 7.35e-47 | 6 |
cavity lining | 3.00e-23 | 12 |
serous membrane | 3.00e-23 | 12 |
perirenal fat | 3.30e-17 | 2 |
breast | 2.03e-12 | 10 |
chest | 2.62e-11 | 11 |
heart left ventricle | 7.27e-09 | 1 |
cardiac ventricle | 7.27e-09 | 1 |
future cardiac ventricle | 7.27e-09 | 1 |
stroma of bone marrow | 1.07e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 2.78e-11 | 3 |
leiomyoma | 2.78e-11 | 3 |
basal cell carcinoma | 2.60e-09 | 1 |
liver cancer | 3.05e-09 | 1 |
benign neoplasm | 1.12e-08 | 4 |