FFCP PHASE1:Hg19::chr14:106586656..106586668,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=5581 | |HGNC=5581 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000390602_5end | |association_with_transcript=0bp_to_ENST00000390602_5end | ||
|cluster_id=chr14:106586656..106586668,- | |||
|coexpression_cluster_id=C218 | |||
|description=CAGE_peak_1_at_IGHV3-13_5end | |description=CAGE_peak_1_at_IGHV3-13_5end | ||
|id=chr14:106586656..106586668,- | |id=chr14:106586656..106586668,- | ||
|ontology_enrichment_celltype=CL:0000236!1.69e-37!14;CL:0000945!6.62e-21!24;CL:0000826!6.62e-21!24;CL:0000542!7.39e-10!53;CL:0000051!7.39e-10!53;CL:0000838!1.97e-08!52 | |ontology_enrichment_celltype=CL:0000236!1.69e-37!14;CL:0000945!6.62e-21!24;CL:0000826!6.62e-21!24;CL:0000542!7.39e-10!53;CL:0000051!7.39e-10!53;CL:0000838!1.97e-08!52 | ||
|ontology_enrichment_celltype_v019=CL:0000236;4.36e-32;13!CL:0000945;2.82e-22;24!CL:0000946;2.84e-10;1!CL:0000786;2.84e-10;1!CL:0000542;2.16e-08;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,4.55e-39,14;CL:0000945,2.09e-22,24;CL:0000826,2.09e-22,24;CL:0000946,2.84e-10,1;CL:0000786,2.84e-10,1;CL:0000980,2.84e-10,1;CL:0000838,8.49e-10,52;CL:0000542,1.36e-09,53;CL:0000051,1.36e-09,53 | |||
|ontology_enrichment_development_v019=UBERON:0006965;5.33e-18;2!UBERON:0004872;1.05e-11;7!UBERON:0001045;2.84e-10;1!UBERON:0006298;7.22e-10;1!UBERON:0008801;7.22e-10;1!UBERON:0010115;7.22e-10;1!CL:0000051;2.16e-08;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.81e-23!115;UBERON:0001829!4.59e-10!2;UBERON:0004177!5.69e-10!7;UBERON:0001155!2.46e-08!9;UBERON:0003408!4.96e-07!10;UBERON:0002106!6.37e-07!3;UBERON:0004854!6.37e-07!3;UBERON:0009034!6.37e-07!3;UBERON:0002095!6.37e-07!3;UBERON:0004782!6.37e-07!3;UBERON:0003281!6.37e-07!3;UBERON:0009664!6.37e-07!3;UBERON:0002296!6.37e-07!3;UBERON:0005602!6.37e-07!3;UBERON:0001179!6.37e-07!3;UBERON:0006293!6.37e-07!3;UBERON:0004921!6.63e-07!129;UBERON:0004185!6.63e-07!129;UBERON:0000059!8.04e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0001829;5.33e-18;2!UBERON:0004921;1.56e-10;33!UBERON:0000029;1.65e-10;1!UBERON:0002372;1.80e-10;1!UBERON:0001961;1.80e-10;1!UBERON:0001744;1.80e-10;1!UBERON:0001042;1.80e-10;1!UBERON:0001735;1.80e-10;1!UBERON:0001154;2.84e-10;1!UBERON:0001153;2.84e-10;1!UBERON:0009854;2.84e-10;1!UBERON:0002363;7.22e-10;1!UBERON:0001831;7.22e-10;1!UBERON:0001736;7.22e-10;1!UBERON:0002171;7.22e-10;1!UBERON:0006518;7.22e-10;1!UBERON:0008949;7.22e-10;1!UBERON:0000101;7.22e-10;1!UBERON:0001567;7.22e-10;1!UBERON:0002167;7.22e-10;1!UBERON:0001155;2.39e-09;9!UBERON:0000160;4.96e-08;17!UBERON:0000059;9.79e-08;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001829,6.35e-18,2;UBERON:0007023,1.71e-14,114;UBERON:0000029,1.65e-10,1;UBERON:0002372,1.80e-10,1;UBERON:0001961,1.80e-10,1;UBERON:0001744,1.80e-10,1;UBERON:0001735,1.80e-10,1;UBERON:0001154,4.06e-10,1;UBERON:0001153,4.06e-10,1;UBERON:0001045,4.06e-10,1;UBERON:0001736,5.30e-10,1;UBERON:0006298,5.30e-10,1;UBERON:0002171,8.24e-10,1;UBERON:0006518,8.24e-10,1;UBERON:0008949,8.24e-10,1;UBERON:0000101,8.24e-10,1;UBERON:0002167,8.24e-10,1;UBERON:0002363,1.07e-09,1;UBERON:0007645,1.07e-09,1;UBERON:0007647,1.07e-09,1;UBERON:0010115,1.07e-09,1;UBERON:0001831,1.17e-09,1;UBERON:0001567,1.17e-09,1;UBERON:0008801,1.17e-09,1;UBERON:0001155,2.42e-09,9;UBERON:0005409,2.23e-08,25;UBERON:0000160,4.74e-08,17;UBERON:0000059,9.91e-08,11 | |||
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| ||
|short_description=p1@IGHV3-13 | |short_description=p1@IGHV3-13 | ||
}} | }} |
Latest revision as of 22:08, 18 September 2015
Short description: | p1@IGHV3-13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_IGHV3-13_5end |
Coexpression cluster: | C218_tonsil_lymph_CD19_spleen_colon_appendix_salivary |
Association with transcript: | 0bp_to_ENST00000390602_5end |
EntrezGene: | NA |
HGNC: | 5581 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 4.55e-39 | 14 |
lymphocyte of B lineage | 2.09e-22 | 24 |
pro-B cell | 2.09e-22 | 24 |
antibody secreting cell | 2.84e-10 | 1 |
plasma cell | 2.84e-10 | 1 |
plasmablast | 2.84e-10 | 1 |
lymphoid lineage restricted progenitor cell | 8.49e-10 | 52 |
lymphocyte | 1.36e-09 | 53 |
common lymphoid progenitor | 1.36e-09 | 53 |
Ontology term | p-value | n |
---|---|---|
major salivary gland | 6.35e-18 | 2 |
adult organism | 1.71e-14 | 114 |
lymph node | 1.65e-10 | 1 |
tonsil | 1.80e-10 | 1 |
mucosa-associated lymphoid tissue | 1.80e-10 | 1 |
lymphoid tissue | 1.80e-10 | 1 |
tonsillar ring | 1.80e-10 | 1 |
vermiform appendix | 4.06e-10 | 1 |
caecum | 4.06e-10 | 1 |
midgut | 4.06e-10 | 1 |
submandibular gland | 5.30e-10 | 1 |
submandibular gland primordium | 5.30e-10 | 1 |
lower lobe of right lung | 8.24e-10 | 1 |
right lung lobe | 8.24e-10 | 1 |
lower lobe of lung | 8.24e-10 | 1 |
lobe of lung | 8.24e-10 | 1 |
right lung | 8.24e-10 | 1 |
dura mater | 1.07e-09 | 1 |
future meninx | 1.07e-09 | 1 |
ectomeninx | 1.07e-09 | 1 |
future dura mater | 1.07e-09 | 1 |
parotid gland | 1.17e-09 | 1 |
cheek | 1.17e-09 | 1 |
parotid gland primordium | 1.17e-09 | 1 |
colon | 2.42e-09 | 9 |
gastrointestinal system | 2.23e-08 | 25 |
intestine | 4.74e-08 | 17 |
large intestine | 9.91e-08 | 11 |