FFCP PHASE1:Hg19::chr19:8942962..8942987,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=148156 | |EntrezGene=148156 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26422 | |HGNC=26422 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc010dwg.1_5end | |association_with_transcript=0bp_to_uc010dwg.1_5end | ||
|cluster_id=chr19:8942962..8942987,- | |||
|description=CAGE_peak_1_at_ZNF558_5end | |description=CAGE_peak_1_at_ZNF558_5end | ||
|id=chr19:8942962..8942987,- | |id=chr19:8942962..8942987,- | ||
|ontology_enrichment_celltype=CL:0000791!1.70e-07!18;CL:0000789!1.70e-07!18;CL:0002420!1.70e-07!18;CL:0002419!1.70e-07!18;CL:0000790!1.70e-07!18 | |ontology_enrichment_celltype=CL:0000791!1.70e-07!18;CL:0000789!1.70e-07!18;CL:0002420!1.70e-07!18;CL:0002419!1.70e-07!18;CL:0000790!1.70e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0000791;9.05e-08;18!CL:0000789;9.05e-08;18!CL:0002419;9.05e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.12e-07,18;CL:0000789,1.12e-07,18;CL:0002420,1.12e-07,18;CL:0002419,1.12e-07,18;CL:0000790,1.12e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000790;9.05e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.89e-13!94;UBERON:0001016!1.89e-13!94;UBERON:0002346!5.37e-13!90;UBERON:0001049!6.96e-13!57;UBERON:0005068!6.96e-13!57;UBERON:0006241!6.96e-13!57;UBERON:0007135!6.96e-13!57;UBERON:0003075!1.38e-12!86;UBERON:0007284!1.38e-12!86;UBERON:0000924!3.14e-12!173;UBERON:0006601!3.14e-12!173;UBERON:0001017!4.10e-12!82;UBERON:0007023!5.82e-12!115;UBERON:0004121!8.71e-12!169;UBERON:0005743!1.32e-11!86;UBERON:0002616!4.11e-11!59;UBERON:0000955!4.99e-11!69;UBERON:0006238!4.99e-11!69;UBERON:0003080!1.05e-10!42;UBERON:0002780!3.68e-10!41;UBERON:0001890!3.68e-10!41;UBERON:0006240!3.68e-10!41;UBERON:0003056!7.45e-09!61;UBERON:0001893!1.25e-08!34;UBERON:0002791!2.18e-08!33;UBERON:0000153!2.64e-08!129;UBERON:0007811!2.64e-08!129;UBERON:0002020!3.32e-08!34;UBERON:0003528!3.32e-08!34;UBERON:0001869!7.79e-08!32;UBERON:0000033!3.39e-07!123;UBERON:0000956!6.69e-07!25;UBERON:0000203!6.69e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.33e-07;41!UBERON:0001890;1.33e-07;41!UBERON:0000073;4.31e-07;53!UBERON:0002616;4.31e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.34e-13,89;UBERON:0001049,4.00e-12,56;UBERON:0005068,4.00e-12,56;UBERON:0006241,4.00e-12,56;UBERON:0007135,4.00e-12,56;UBERON:0001017,2.57e-11,81;UBERON:0007023,2.79e-11,114;UBERON:0000073,3.45e-11,53;UBERON:0002616,3.45e-11,53;UBERON:0002346,6.59e-11,86;UBERON:0004121,1.29e-10,171;UBERON:0000924,1.29e-10,171;UBERON:0006601,1.29e-10,171;UBERON:0003075,1.73e-10,82;UBERON:0007284,1.73e-10,82;UBERON:0000955,4.43e-10,68;UBERON:0006238,4.43e-10,68;UBERON:0002780,4.74e-10,41;UBERON:0001890,4.74e-10,41;UBERON:0003080,4.74e-10,41;UBERON:0006240,4.74e-10,41;UBERON:0001893,1.29e-08,34;UBERON:0010371,1.73e-08,104;UBERON:0003528,3.49e-08,34;UBERON:0002020,3.49e-08,34;UBERON:0003056,5.39e-08,61;UBERON:0002791,6.38e-08,32;UBERON:0010314,8.16e-08,132;UBERON:0001869,8.40e-08,32;UBERON:0011216,2.28e-07,223;UBERON:0000956,7.84e-07,25;UBERON:0000203,7.84e-07,25 | |||
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| ||
|short_description=p1@ZNF558 | |short_description=p1@ZNF558 | ||
}} | }} |
Latest revision as of 01:26, 25 September 2015
Short description: | p1@ZNF558 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ZNF558_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc010dwg.1_5end |
EntrezGene: | ZNF558 |
HGNC: | 26422 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.12e-07 | 18 |
alpha-beta T cell | 1.12e-07 | 18 |
immature T cell | 1.12e-07 | 18 |
mature T cell | 1.12e-07 | 18 |
immature alpha-beta T cell | 1.12e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.34e-13 | 89 |
neural tube | 4.00e-12 | 56 |
neural rod | 4.00e-12 | 56 |
future spinal cord | 4.00e-12 | 56 |
neural keel | 4.00e-12 | 56 |
central nervous system | 2.57e-11 | 81 |
adult organism | 2.79e-11 | 114 |
regional part of nervous system | 3.45e-11 | 53 |
regional part of brain | 3.45e-11 | 53 |
neurectoderm | 6.59e-11 | 86 |
ectoderm-derived structure | 1.29e-10 | 171 |
ectoderm | 1.29e-10 | 171 |
presumptive ectoderm | 1.29e-10 | 171 |
neural plate | 1.73e-10 | 82 |
presumptive neural plate | 1.73e-10 | 82 |
brain | 4.43e-10 | 68 |
future brain | 4.43e-10 | 68 |
regional part of forebrain | 4.74e-10 | 41 |
forebrain | 4.74e-10 | 41 |
anterior neural tube | 4.74e-10 | 41 |
future forebrain | 4.74e-10 | 41 |
telencephalon | 1.29e-08 | 34 |
ecto-epithelium | 1.73e-08 | 104 |
brain grey matter | 3.49e-08 | 34 |
gray matter | 3.49e-08 | 34 |
pre-chordal neural plate | 5.39e-08 | 61 |
regional part of telencephalon | 6.38e-08 | 32 |
structure with developmental contribution from neural crest | 8.16e-08 | 132 |
cerebral hemisphere | 8.40e-08 | 32 |
organ system subdivision | 2.28e-07 | 223 |
cerebral cortex | 7.84e-07 | 25 |
pallium | 7.84e-07 | 25 |