FFCP PHASE1:Hg19::chr11:2016952..2016959,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr11:2016952..2016959,-
|short_description=p35@H19
|description=CAGE_peak_35_at_H19_5end
|association_with_transcript=-149bp_to_BC010185_5end
|EntrezGene=2831...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=283120 | |EntrezGene=283120 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=4713 | |HGNC=4713 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-149bp_to_BC010185_5end | |||
|cluster_id=chr11:2016952..2016959,- | |||
|coexpression_cluster_id=C227 | |||
|description=CAGE_peak_35_at_H19_5end | |||
|id=chr11:2016952..2016959,- | |||
|ontology_enrichment_celltype=CL:0000349!2.63e-07!3;CL:0002577!2.63e-07!3;CL:0002541!5.45e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000349;2.11e-33;19!CL:0002577;1.96e-17;3!CL:0002536;9.99e-12;2!CL:0002575;1.90e-11;2!CL:0002537;7.33e-11;5!CL:0002541;1.52e-08;3!CL:0002616;8.25e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.29e-33,19;CL:0002577,2.07e-17,3;CL:0002536,1.11e-11,2;CL:0002575,1.31e-11,2;CL:0002537,7.22e-11,5;CL:0002541,1.54e-08,3;CL:0002616,8.03e-07,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!9.33e-20!14;UBERON:0000158!9.33e-20!14;UBERON:0001557!2.45e-16!19;UBERON:0001737!3.05e-16!9;UBERON:0003124!2.59e-14!7;UBERON:0000478!5.09e-12!24;UBERON:0004923!5.73e-11!57;UBERON:0000077!1.41e-09!130;UBERON:0003104!2.52e-09!238;UBERON:0009142!2.52e-09!238;UBERON:0001987!5.47e-09!4;UBERON:0004340!5.47e-09!4;UBERON:0004119!2.09e-08!169;UBERON:0000925!2.09e-08!169;UBERON:0006595!2.09e-08!169;UBERON:0000305!1.12e-07!7;UBERON:0000064!2.12e-07!219;UBERON:0000072!2.55e-07!46;UBERON:0004921!2.70e-07!129;UBERON:0004185!2.70e-07!129;UBERON:0001041!5.40e-07!98;UBERON:0000476!5.45e-07!3;UBERON:0000920!5.45e-07!3;UBERON:0001723!6.62e-07!3;UBERON:0001033!6.62e-07!3;UBERON:0010056!6.62e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;8.96e-31;24!UBERON:0005631;1.38e-26;10!UBERON:0000158;1.38e-26;10!UBERON:0001987;3.98e-22;4!UBERON:0000305;9.45e-20;7!UBERON:0001737;2.29e-09;9!UBERON:0001557;2.29e-09;9!UBERON:0003124;1.52e-08;3!UBERON:0000920;1.52e-08;3!UBERON:0001723;3.19e-08;3!UBERON:0001033;3.19e-08;3!UBERON:0002426;6.98e-07;1!UBERON:0003831;6.98e-07;1!UBERON:0003898;6.98e-07;1!UBERON:0004830;6.98e-07;1!UBERON:0003830;6.98e-07;1!UBERON:0005175;6.98e-07;1!UBERON:0001774;6.98e-07;1!UBERON:0001103;6.98e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.23e-45,14;UBERON:0000158,1.23e-45,14;UBERON:0000478,1.03e-30,24;UBERON:0003124,6.48e-28,7;UBERON:0001987,4.82e-22,4;UBERON:0004340,4.82e-22,4;UBERON:0000305,1.00e-19,7;UBERON:0004871,3.12e-17,8;UBERON:0004923,2.74e-11,66;UBERON:0001557,2.48e-09,19;UBERON:0001737,3.00e-09,9;UBERON:0000920,1.54e-08,3;UBERON:0001723,3.43e-08,3;UBERON:0001033,3.43e-08,3;UBERON:0010056,3.43e-08,3;UBERON:0002426,7.60e-07,1;UBERON:0003831,7.60e-07,1;UBERON:0003898,7.60e-07,1;UBERON:0004830,7.60e-07,1;UBERON:0003830,7.60e-07,1;UBERON:0005175,7.60e-07,1;UBERON:0001774,7.60e-07,1;UBERON:0001103,7.60e-07,1;UBERON:0010084,7.60e-07,1;UBERON:0004119,9.50e-07,160;UBERON:0000925,9.50e-07,160;UBERON:0006595,9.50e-07,160 | |||
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| ||
|short_description=p35@H19 | |||
}} | }} |
Latest revision as of 06:16, 17 September 2015
Short description: | p35@H19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_35_at_H19_5end |
Coexpression cluster: | C227_chorionic_amniotic_Mesenchymal_Placental_gastric_diaphragm_tongue |
Association with transcript: | -149bp_to_BC010185_5end |
EntrezGene: | H19 |
HGNC: | 4713 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.29e-33 | 19 |
placental epithelial cell | 2.07e-17 | 3 |
amniotic epithelial cell | 1.11e-11 | 2 |
central nervous system pericyte | 1.31e-11 | 2 |
amnion mesenchymal stem cell | 7.22e-11 | 5 |
chorionic membrane mesenchymal stem cell | 1.54e-08 | 3 |
perirenal adipocyte cell | 8.03e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.23e-45 | 14 |
membranous layer | 1.23e-45 | 14 |
extraembryonic structure | 1.03e-30 | 24 |
chorion | 6.48e-28 | 7 |
placenta | 4.82e-22 | 4 |
allantois | 4.82e-22 | 4 |
amnion | 1.00e-19 | 7 |
somatic layer of lateral plate mesoderm | 3.12e-17 | 8 |
organ component layer | 2.74e-11 | 66 |
upper respiratory tract | 2.48e-09 | 19 |
larynx | 3.00e-09 | 9 |
egg chorion | 1.54e-08 | 3 |
tongue | 3.43e-08 | 3 |
gustatory system | 3.43e-08 | 3 |
future tongue | 3.43e-08 | 3 |
chest muscle | 7.60e-07 | 1 |
respiratory system muscle | 7.60e-07 | 1 |
skeletal muscle of trunk | 7.60e-07 | 1 |
respiratory system skeletal muscle | 7.60e-07 | 1 |
thoracic segment muscle | 7.60e-07 | 1 |
chest organ | 7.60e-07 | 1 |
muscle of trunk | 7.60e-07 | 1 |
diaphragm | 7.60e-07 | 1 |
future diaphragm | 7.60e-07 | 1 |
endoderm-derived structure | 9.50e-07 | 160 |
endoderm | 9.50e-07 | 160 |
presumptive endoderm | 9.50e-07 | 160 |