FFCP PHASE1:Hg19::chr1:29241216..29241227,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2035 | |EntrezGene=2035 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3377 | |HGNC=3377 | ||
|TSSclassifier=strong | |||
|UniProt=P11171,Q4VB86 | |UniProt=P11171,Q4VB86 | ||
|association_with_transcript=125bp_to_ENST00000373797,uc001brk.2,uc001brl.1,uc009vtk.1_5end | |association_with_transcript=125bp_to_ENST00000373797,uc001brk.2,uc001brl.1,uc009vtk.1_5end | ||
|cluster_id=chr1:29241216..29241227,+ | |||
|description=CAGE_peak_6_at_EPB41_5end | |description=CAGE_peak_6_at_EPB41_5end | ||
|id=chr1:29241216..29241227,+ | |id=chr1:29241216..29241227,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002322;7.86e-16;5!CL:0002321;2.16e-09;15!CL:0000123;3.44e-08;2!CL:0000242;3.44e-08;2!CL:0000039;6.02e-08;7!CL:0000586;6.02e-08;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,3.74e-16,5;CL:0000242,3.47e-08,2;CL:0000039,4.88e-08,7;CL:0000586,4.88e-08,7 | |||
|ontology_enrichment_development_v019=UBERON:0006215;2.71e-11;3 | |||
|ontology_enrichment_disease=DOID:162!3.95e-11!235;DOID:14566!1.46e-10!239;DOID:3095!5.61e-09!22;DOID:2994!5.61e-09!22;DOID:0050686!2.66e-08!137 | |||
|ontology_enrichment_disease_v019=DOID:3095;3.05e-10;22!DOID:2994;3.05e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.59e-10,22;DOID:2994,2.59e-10,22 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;3.27e-08;2!UBERON:0002757;3.27e-08;2!UBERON:0010134;3.27e-08;2!UBERON:0005408;3.27e-08;2!UBERON:0001899;3.27e-08;2!UBERON:0000922;1.17e-07;49!UBERON:0000473;6.01e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,3.47e-08,2;UBERON:0002757,3.47e-08,2;UBERON:0010134,3.47e-08,2;UBERON:0005408,3.47e-08,2;UBERON:0001899,3.47e-08,2;UBERON:0000473,5.02e-07,8 | |||
|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0.602694528023977,0,0,0,0,0,0,0.547497700291537,0.251085279189606,0,0,0.157421562627358,1.18009283054671,0.767658796194425,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0.257575567634187,0,0,0,0,0.411167888021826,0,0,0.256160706529101,0,0.344745680736619,0,0,0,0,0,0.306083892370903,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0.382273228125229,1.32171328579026,0.560508562981536,0.263384084775077,0.590129310341499,1.17903228824749,0.411202997999018,1.00311897234407,0,1.4203434172042,0,0.557052284425868,0.294605907474837,0,1.35401931882508,0.384273959177026,0.130059347559878,0.493313713811028,0.276350017785848,0.579606171470105,0.741432815810302,0.535081656179426,1.04535523804977,0.906474741580529,0,0.68725489096526,1.26509846009751,0.637130828648193,0,0,0.602300476311091,1.15187950038977,0,0.236777252044017,0,0.201606743224732,1.33720097891754,0.724122019413995,2.43806866313962,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0,0.130979075497713,0,0,0,0,0,0.238490624305342,0,0,0,0.860234595106124,0,0,0.419499436209906,0,0.208994966536811,0,0.35576626268671,0,0,0,0,0,0,0.357198913136319,0,0.225222960966644,0,0.949265659568129,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0.311211035399766,0,0,0,0,0.234321431833797,0,0,0,0,0.161872944368132,0.140450806702248,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0.206105058476878,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,1.82960559194393,3.44577397635862,1.2781333715647,1.65857688024593,1.26160425437814,1.45990943630332,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0.122988438543114,0,0,0,0,0,0,0,0,0.231860809950154,0,0.288732895522148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0.207328115540772,0,0,0.063497894292169,0,0,0,0,0,0.285826432630578,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90544744788996,0.985153801009636,0,0.641715181398742,0.254094624222463,1.30139853857622,0.773288812777695,0.837581326671744,0,1.49801404789436,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0.82707210449155,0.431428401637234,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0.120859449591622,0,0,0,0,0,0.451199612907412,0,0.784349769176855,0,0,1.13733384070897,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0.103041011647722,0.640986253728404,0.247528499761764,0,0,0,0,0,0,0,0,0,0,0.178064071293475,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0.0982490410131212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0.569647187174163,0.476463550915578,0.411362273086194,0,0,0,0.534120355637366,0,0.245040215981032,0.929015875628594,1.44269212976445,0.995985806877798,0,0.399158742865633,0.191505370132367,0.635020748171649,0,0.561594356226918,0.684704037099577,0.156679895773023,2.50634477090067,1.18504244461122,0,0.403599414382095,0,0,0,0,0,0,0.278406173895242,1.23087398947712,0.540911356951966,1.33228787199128,2.81974010175699,0.37428108081644,0,0.121360521749513,0,0,0.23874448473769,0,0,0,0,0,0,0.63337622438398,0,0,0.503865495708552,0,0.615424027305347,0,0.179736702294654,0,0,0,0,0,0,0.0927680981618513,1.99613798001194,0.520855522170466,0,0.724999575434793,0,0,0.236387681767936,0.344743373241465,0.291604613383254,1.04174996959975,0,0.723578631752448,6.10326945268333,2.98564001814306,3.84211904639612,0.658156191461918,0.435753854075961,0.139423744278603,0.153900517007594,0.113942055847001,0.23056390438806,0.179515288819544,0,0,0,0,2.04386596391473,0,0.664846727600626,0.225595660617181,0.392125068635479,0.503464760927528,0,0,0,0.489698424477443,0.706765357169704,0.432777279484182,0.995261931078505,0.176915129006678,0.611030144933625,0.593042257361244,0.123563938946503,0.104421949505455,0,0,0,0.729819156862664,0,0.485560759068186,0,0,0,0,2.25485129121739,0.829505531177977,0,0,0,1.19472429772959,0.284609546029793,0,0.173559738335131,0.0979923974143777,0.174118413160805,0,0,0.387025325156341,0.365446585430928,0.492692742319255,0,0,0.677942222341597,0,0.19871461170299,0.0633107959558787,0,0,0,0.19980960958213,0.288180834308212,0.114536596165916,0.857974989309823,0,0,0.471388069233591,0.135904206073614,0.209205692624666,0.305994652908965,1.15580235960608,0,0,0,0.429765441419957,0,0.279282401272254,0,0,0.199679000498991,0,0,0,0,6.98975697164723,0.709048640765013,0.659326867049332,1.01105315781277,0.393709926058995,0.508039992394707,0,0,0.803765742325096,1.2378549293751,1.66176135211674,0,0,0.182248669974074,0,0,0.367182116944987,0,0,0.191915197319445,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.387848869084652,0.13223260174269,0,0,0.213574825135389,0.314408610199332,0,0,0.592834895693833,1.21792598380896,0,0,0,0,0,2.04170325125305,0,0.122026264901963,0.1251909307065,0,0,0.18628920882415,0.830091809617385,0,0.151649117541648,0,0,4.21501415226193,4.20270982971393,0.149254802886874,0,0,0,0,0,0,0.302461847526478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0.168942440653073,0,0,0,0.553033744606923,0,0,0,0,0,0,0.19998739585493,0.213383459388282,0,0,0.184105950251841,0.139879507719444,0,0.639471856518258,0.431299245586727,1.41539347670307,0.327628914576042,0.33946505990805,0.850299680406731,1.11542187833102,1.11728983594649,0,0.394308725006267,0,0,0,0.128458450192919,0,0.159633859057151,0,1.26035848110859,0,0.161475645631851,0,0.196295437002051,0,0,0,0,1.3807198521202,1.39241355481392,0,0,0,0.261906694481422,0.163771917510097,0,0.135075169236789,0,0.413373593002368,0.0634158101939068,0.546974809018219,0,0,0,0,7.49982570229601,3.36283722218824,0,0,0.0887023701626388,0.230467975111559,0.171488009437418,0.475788130837822,0.0657727735628491,0,0,0,0.628462359664008,1.96190514319652,0,0,0,0.428859265059938,0.94808167039636,0.116241425368125,0.521574816907738,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0.111855431797792,0.098150233615243,0,0,0,0,0,1.87151570769685,1.59160620129095,0.237840181555137,0.79062257427272,0.659643100472575,5.88755089910027,0.231522474323834,0.218559560503957,7.99539403814589,0,1.88541237681301,0,0,0,0,0.375935671919414,0.128915775947154,0.199882311849858,0,0,0.0802413666891683,0,0,0,0.473314686579554,0,1.30905207102113,0,0,0,0,0.756998549010474,1.52971800749174,0.506794004045748,1.63182127587171,3.20660886318673,3.6757959813938,2.25636785363138,0.151557396436479,0,0,0.20686599172379,0.213233981900981,0,0.516711278688049,0.620747142958579,0,0,0,0,0,0.202056159043763,0.0717222053926763,0,0.732629417498771,0,0,0,0,0.244482888365733,0,0,0.402547587182052,0 | |phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0.602694528023977,0,0,0,0,0,0,0.547497700291537,0.251085279189606,0,0,0.157421562627358,1.18009283054671,0.767658796194425,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0.257575567634187,0,0,0,0,0.411167888021826,0,0,0.256160706529101,0,0.344745680736619,0,0,0,0,0,0.306083892370903,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0.382273228125229,1.32171328579026,0.560508562981536,0.263384084775077,0.590129310341499,1.17903228824749,0.411202997999018,1.00311897234407,0,1.4203434172042,0,0.557052284425868,0.294605907474837,0,1.35401931882508,0.384273959177026,0.130059347559878,0.493313713811028,0.276350017785848,0.579606171470105,0.741432815810302,0.535081656179426,1.04535523804977,0.906474741580529,0,0.68725489096526,1.26509846009751,0.637130828648193,0,0,0.602300476311091,1.15187950038977,0,0.236777252044017,0,0.201606743224732,1.33720097891754,0.724122019413995,2.43806866313962,0,0,0,0,0,0,0,0.0945348171640679,0.221729397462564,0,0.130979075497713,0,0,0,0,0,0.238490624305342,0,0,0,0.860234595106124,0,0,0.419499436209906,0,0.208994966536811,0,0.35576626268671,0,0,0,0,0,0,0.357198913136319,0,0.225222960966644,0,0.949265659568129,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0.311211035399766,0,0,0,0,0.234321431833797,0,0,0,0,0.161872944368132,0.140450806702248,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0.206105058476878,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,1.82960559194393,3.44577397635862,1.2781333715647,1.65857688024593,1.26160425437814,1.45990943630332,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0.122988438543114,0,0,0,0,0,0,0,0,0.231860809950154,0,0.288732895522148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0.207328115540772,0,0,0.063497894292169,0,0,0,0,0,0.285826432630578,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90544744788996,0.985153801009636,0,0.641715181398742,0.254094624222463,1.30139853857622,0.773288812777695,0.837581326671744,0,1.49801404789436,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0.82707210449155,0.431428401637234,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0.120859449591622,0,0,0,0,0,0.451199612907412,0,0.784349769176855,0,0,1.13733384070897,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0.103041011647722,0.640986253728404,0.247528499761764,0,0,0,0,0,0,0,0,0,0,0.178064071293475,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0.0982490410131212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,0,0.569647187174163,0.476463550915578,0.411362273086194,0,0,0,0.534120355637366,0,0.245040215981032,0.929015875628594,1.44269212976445,0.995985806877798,0,0.399158742865633,0.191505370132367,0.635020748171649,0,0.561594356226918,0.684704037099577,0.156679895773023,2.50634477090067,1.18504244461122,0,0.403599414382095,0,0,0,0,0,0,0.278406173895242,1.23087398947712,0.540911356951966,1.33228787199128,2.81974010175699,0.37428108081644,0,0.121360521749513,0,0,0.23874448473769,0,0,0,0,0,0,0.63337622438398,0,0,0.503865495708552,0,0.615424027305347,0,0.179736702294654,0,0,0,0,0,0,0.0927680981618513,1.99613798001194,0.520855522170466,0,0.724999575434793,0,0,0.236387681767936,0.344743373241465,0.291604613383254,1.04174996959975,0,0.723578631752448,6.10326945268333,2.98564001814306,3.84211904639612,0.658156191461918,0.435753854075961,0.139423744278603,0.153900517007594,0.113942055847001,0.23056390438806,0.179515288819544,0,0,0,0,2.04386596391473,0,0.664846727600626,0.225595660617181,0.392125068635479,0.503464760927528,0,0,0,0.489698424477443,0.706765357169704,0.432777279484182,0.995261931078505,0.176915129006678,0.611030144933625,0.593042257361244,0.123563938946503,0.104421949505455,0,0,0,0.729819156862664,0,0.485560759068186,0,0,0,0,2.25485129121739,0.829505531177977,0,0,0,1.19472429772959,0.284609546029793,0,0.173559738335131,0.0979923974143777,0.174118413160805,0,0,0.387025325156341,0.365446585430928,0.492692742319255,0,0,0.677942222341597,0,0.19871461170299,0.0633107959558787,0,0,0,0.19980960958213,0.288180834308212,0.114536596165916,0.857974989309823,0,0,0.471388069233591,0.135904206073614,0.209205692624666,0.305994652908965,1.15580235960608,0,0,0,0.429765441419957,0,0.279282401272254,0,0,0.199679000498991,0,0,0,0,6.98975697164723,0.709048640765013,0.659326867049332,1.01105315781277,0.393709926058995,0.508039992394707,0,0,0.803765742325096,1.2378549293751,1.66176135211674,0,0,0.182248669974074,0,0,0.367182116944987,0,0,0.191915197319445,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.387848869084652,0.13223260174269,0,0,0.213574825135389,0.314408610199332,0,0,0.592834895693833,1.21792598380896,0,0,0,0,0,2.04170325125305,0,0.122026264901963,0.1251909307065,0,0,0.18628920882415,0.830091809617385,0,0.151649117541648,0,0,4.21501415226193,4.20270982971393,0.149254802886874,0,0,0,0,0,0,0.302461847526478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0.168942440653073,0,0,0,0.553033744606923,0,0,0,0,0,0,0.19998739585493,0.213383459388282,0,0,0.184105950251841,0.139879507719444,0,0.639471856518258,0.431299245586727,1.41539347670307,0.327628914576042,0.33946505990805,0.850299680406731,1.11542187833102,1.11728983594649,0,0.394308725006267,0,0,0,0.128458450192919,0,0.159633859057151,0,1.26035848110859,0,0.161475645631851,0,0.196295437002051,0,0,0,0,1.3807198521202,1.39241355481392,0,0,0,0.261906694481422,0.163771917510097,0,0.135075169236789,0,0.413373593002368,0.0634158101939068,0.546974809018219,0,0,0,0,7.49982570229601,3.36283722218824,0,0,0.0887023701626388,0.230467975111559,0.171488009437418,0.475788130837822,0.0657727735628491,0,0,0,0.628462359664008,1.96190514319652,0,0,0,0.428859265059938,0.94808167039636,0.116241425368125,0.521574816907738,0,0,0,0,0,0.118332000730565,0,0,0,0,0,0.111855431797792,0.098150233615243,0,0,0,0,0,1.87151570769685,1.59160620129095,0.237840181555137,0.79062257427272,0.659643100472575,5.88755089910027,0.231522474323834,0.218559560503957,7.99539403814589,0,1.88541237681301,0,0,0,0,0.375935671919414,0.128915775947154,0.199882311849858,0,0,0.0802413666891683,0,0,0,0.473314686579554,0,1.30905207102113,0,0,0,0,0.756998549010474,1.52971800749174,0.506794004045748,1.63182127587171,3.20660886318673,3.6757959813938,2.25636785363138,0.151557396436479,0,0,0.20686599172379,0.213233981900981,0,0.516711278688049,0.620747142958579,0,0,0,0,0,0.202056159043763,0.0717222053926763,0,0.732629417498771,0,0,0,0,0.244482888365733,0,0,0.402547587182052,0 | ||
|short_description=p6@EPB41 | |short_description=p6@EPB41 | ||
}} | }} |
Latest revision as of 11:13, 17 September 2015
Short description: | p6@EPB41 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_EPB41_5end |
Coexpression cluster: | NA |
Association with transcript: | 125bp_to_ENST00000373797, uc001brk.2, uc001brl.1, uc009vtk.1_5end |
EntrezGene: | EPB41 |
HGNC: | 3377 |
UniProt: | P11171Q4VB86 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 3.74e-16 | 5 |
Merkel cell | 3.47e-08 | 2 |
germ line cell | 4.88e-08 | 7 |
germ cell | 4.88e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
pineal body | 3.47e-08 | 2 |
regional part of epithalamus | 3.47e-08 | 2 |
secretory circumventricular organ | 3.47e-08 | 2 |
circumventricular organ | 3.47e-08 | 2 |
epithalamus | 3.47e-08 | 2 |
testis | 5.02e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.59e-10 | 22 |
germ cell cancer | 2.59e-10 | 22 |