FFCP PHASE1:Hg19::chr17:420796..420800,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55275 | |EntrezGene=55275 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=25608 | |HGNC=25608 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=25bp_to_AK056323_5end | |association_with_transcript=25bp_to_AK056323_5end | ||
|cluster_id=chr17:420796..420800,- | |||
|description=CAGE_peak_2_at_VPS53_5end | |description=CAGE_peak_2_at_VPS53_5end | ||
|id=chr17:420796..420800,- | |id=chr17:420796..420800,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;8.39e-08;22!UBERON:0001871;1.10e-07;6!UBERON:0002791;1.76e-07;32!UBERON:0001869;3.60e-07;32!UBERON:0000956;9.66e-07;25!UBERON:0000203;9.66e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010371,4.55e-08,104;UBERON:0002619,5.43e-08,22;UBERON:0002791,6.42e-08,32;UBERON:0001869,6.42e-08,32;UBERON:0001871,8.64e-08,6;UBERON:0002346,2.10e-07,86;UBERON:0003528,2.37e-07,34;UBERON:0002020,2.37e-07,34;UBERON:0001893,2.37e-07,34;UBERON:0000073,4.07e-07,53;UBERON:0002616,4.07e-07,53;UBERON:0002780,5.36e-07,41;UBERON:0001890,5.36e-07,41;UBERON:0003080,5.36e-07,41;UBERON:0006240,5.36e-07,41;UBERON:0000956,6.63e-07,25;UBERON:0000203,6.63e-07,25;UBERON:0001950,8.34e-07,20 | |||
|phase1_expression=0.726713517082227,0.214100523890983,0.563817616383885,0,0,0,0,0.631719873426831,0.522371256399677,0.245733936501509,0,0.218441372130172,0,0.247532705920093,0,0.672325146451775,0.602694528023977,0,0,0,0.204000691244253,0,0.85870796139317,0.547497700291537,0.376627918784408,0.382067028739756,0.492603536699674,0.629686250509434,0,0.383829398097213,0.154816123316076,0,0,0,0.0774672005803016,0.284338464974843,0.587200878669695,0.553995408531877,0.200544447470142,0.434021741431704,0.447830948479849,0.647787332037959,0.257575567634187,0.581592955118259,0.377875943688809,0,0.232429036905685,0.822335776043652,0,0.575384784644301,0.256160706529101,0,0.344745680736619,1.29096936716765,1.35426486594342,0.752969358170419,0,0.224723484445085,0.612167784741805,0,0,0,0.199463657621632,0,1.16083695451434,0,0,0.251248665256743,0,0.217188844705117,0,0,0,0,0.425208599930087,0,0.22465726229299,0,0,0,1.19350006319454,0.365328307529268,0,0,0,0.853460445133014,0.800791974072025,0.574752439954483,0.661044872784862,0,1.1384259382189,0,0.382273228125229,0,0,0.263384084775077,0,0.393010762749165,0.616804496998528,0.334372990781356,0.32592226663359,0,0,0.111410456885174,0,0.221533894583621,0.541607727530031,0.640456598628376,0.130059347559878,0.328875809207352,0,0,0.14828656316206,0,0,0.226618685395132,0,0,0,0,0,0,0,0,0,0.473554504088034,0,0.201606743224732,0,0.144824403882799,0,0,0,0,1.00267582127178,0.289693037921647,0,0.486634870302636,0.661743720148475,1.10864698731282,0.351339142772504,0,0,0.741568885568859,0.324547393654683,0.174129737299267,1.19662164466979,0,0,0,0.993812036833525,0,1.04142150482278,0,0,0.550236083880135,0.417989933073621,0.516833518338658,1.06729878806013,0,0,0,0,0,1.62028389576352,0.625098097988558,0.673588117878509,0.337834441449967,0,0,0.366403487860815,0,0,0,0.993943903390637,0.379891534993739,0.264818361626438,0,1.06400514659507,0,0,0.24666754841716,0,0.134710672069688,0,0,0,0,0,0.570471821544449,1.04614076386261,0,0,0.140450806702248,0.408308342509787,0.61417158655884,0.103325781175765,0,0.247266929278557,0,0,1.17835279767846,0.375355559615893,0,0,0,0,0.453728732640084,0,0.427114777637135,0.211931901159562,0,0,0,0.18611685633159,0.675105328965065,0,0,0.184099797284599,0,0,0,0.169560592310488,0.386521706326594,1.36373060295417,0.286804595389004,0.121973706129595,0.132529768321485,0.116193942869518,0,0.252320850875628,0,0,0,1.38134921352481,0,0,0.118306800039844,0,0,0,0.217879444092406,0,0,0.196221465125346,0,0,0,0.8231480226628,0,0,0,0,0.441463099414651,0.245976877086227,0.171567810298526,0.768251997860379,0,0.301586917234893,0.740707561268237,0,0,0,0.463721619900307,0,0.144366447761074,0.462985512576611,0,0,0.858486162094873,0.738651018262192,0.234004265139238,0.594524649154913,0,0,0,0.268675568108545,0,0,0,0.352193736052904,0,0,0.37872730027914,0.126995788584338,0.381988425558278,1.17217447210047,0,0.514137463516618,0.901029173531752,0.571652865261156,0,0,0.2933531432838,0.517086863031111,3.57656445851882,0,0,0,0.257207374262142,0,0.532844358032199,0.285955987316295,0.542621605391443,0,0.325736184293735,0.355391948742546,0,1.80863626235752,0,0.699810938274399,0,0,0,0.479249710983165,0,0,0.579125226670317,1.02738161275192,0.179060963239896,0.560425719967636,0,0,0.513372145118994,0,0,0,0,0.637938751653163,0,0,0,0.36807447515742,0.500170521059677,0,0.831883446123229,0.713715955188647,0.157702415033935,1.05427273493442,0,0,0,0.664225598535437,0,0.781952530212746,0,0,0,0.431428401637234,0.213455115606889,0,0,0.907170879989041,0.496215615637554,0.460385919864187,0.841980283299221,0.256278298511402,0,1.12597744800525,0,0.616838775210622,0,0.574890092096664,0,0.116210378459959,0.120859449591622,0.802025881213139,0.368323955743585,0.34444334449382,0.728364672026868,1.18011973463482,0,0.15403067420883,0.784349769176855,0,0.527758144464379,0,0,0.215915916102139,0,0,1.50506932156456,0,0,0.223874754722178,0,0.522870902049801,0,0.328014645699706,0,0.206082023295445,0.27470839445503,0.247528499761764,0.574265537996172,0,0,0.096670718292122,0.154048617114644,0,0,0.322260734604821,1.0151168573996,0.340906509664404,0.178064071293475,0.330569830721956,0.576570202095319,0.255225424989168,0.6069466851333,0,0,0,0,0,0,0,0.286249773483982,0.372158369359667,0.949138274156178,0.953150969619124,0,0,0,0,0.899362287916574,0.274537029736055,0.942499218765491,1.81964233415984,0,0.842516912477962,0,0.243713489631284,0,0.136499911407986,0.565621727814851,0,0,1.32687795048244,0,0.578775534266688,0.655894752046633,0.202910376962704,0.6196469961995,0,0.286822704408103,0.0982490410131212,0.35667105148125,0,0.844430541190656,0,0.379473173765715,0,0.577332676353072,0.670302275535787,1.08890984861323,0.564862804660675,0,0,0.886860307073351,0,0,0,0,0.238231775457789,0,0,0,0,1.06824071127473,0,0,0.185803175125719,0.28853842595289,0.426851060090485,0.637705090915289,0,0.191505370132367,0.423347165447766,0,0,0.684704037099577,0.313359791546046,0,0.169291777801603,0.321176150207399,0,0,0.343505344755765,0,0,0.166849141711909,0.39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| ||
|short_description=p2@VPS53 | |short_description=p2@VPS53 | ||
}} | }} |
Latest revision as of 19:16, 24 September 2015
Short description: | p2@VPS53 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_VPS53_5end |
Coexpression cluster: | NA |
Association with transcript: | 25bp_to_AK056323_5end |
EntrezGene: | VPS53 |
HGNC: | 25608 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ecto-epithelium | 4.55e-08 | 104 |
regional part of cerebral cortex | 5.43e-08 | 22 |
regional part of telencephalon | 6.42e-08 | 32 |
cerebral hemisphere | 6.42e-08 | 32 |
temporal lobe | 8.64e-08 | 6 |
neurectoderm | 2.10e-07 | 86 |
brain grey matter | 2.37e-07 | 34 |
gray matter | 2.37e-07 | 34 |
telencephalon | 2.37e-07 | 34 |
regional part of nervous system | 4.07e-07 | 53 |
regional part of brain | 4.07e-07 | 53 |
regional part of forebrain | 5.36e-07 | 41 |
forebrain | 5.36e-07 | 41 |
anterior neural tube | 5.36e-07 | 41 |
future forebrain | 5.36e-07 | 41 |
cerebral cortex | 6.63e-07 | 25 |
pallium | 6.63e-07 | 25 |
neocortex | 8.34e-07 | 20 |