FFCP PHASE1:Hg19::chr2:241976606..241976617,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25992 | |EntrezGene=25992 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24696 | |HGNC=24696 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-19bp_to_ENST00000401644_5end | |association_with_transcript=-19bp_to_ENST00000401644_5end | ||
|cluster_id=chr2:241976606..241976617,+ | |||
|coexpression_cluster_id=C4211 | |||
|description=CAGE_peak_12_at_SNED1_5end | |description=CAGE_peak_12_at_SNED1_5end | ||
|id=chr2:241976606..241976617,+ | |id=chr2:241976606..241976617,+ | ||
|ontology_enrichment_celltype=CL:0000542!8.92e-33!53;CL:0000051!8.92e-33!53;CL:0000838!1.36e-30!52;CL:0000945!1.79e-30!24;CL:0000826!1.79e-30!24;CL:0000236!1.87e-21!14;CL:0002087!5.98e-19!119;CL:0000738!7.26e-15!140;CL:0002031!5.07e-14!124;CL:0000080!5.04e-13!6;CL:0000988!2.03e-12!182;CL:0000037!1.32e-10!172;CL:0000566!1.32e-10!172;CL:0002032!1.20e-09!165;CL:0000837!1.20e-09!165;CL:0000785!1.36e-07!2;CL:0000955!1.36e-07!2;CL:0000818!1.36e-07!2;CL:0000954!1.36e-07!2;CL:0000816!1.36e-07!2;CL:0000815!3.48e-07!2;CL:0000792!3.48e-07!2;CL:0002677!3.48e-07!2 | |ontology_enrichment_celltype=CL:0000542!8.92e-33!53;CL:0000051!8.92e-33!53;CL:0000838!1.36e-30!52;CL:0000945!1.79e-30!24;CL:0000826!1.79e-30!24;CL:0000236!1.87e-21!14;CL:0002087!5.98e-19!119;CL:0000738!7.26e-15!140;CL:0002031!5.07e-14!124;CL:0000080!5.04e-13!6;CL:0000988!2.03e-12!182;CL:0000037!1.32e-10!172;CL:0000566!1.32e-10!172;CL:0002032!1.20e-09!165;CL:0000837!1.20e-09!165;CL:0000785!1.36e-07!2;CL:0000955!1.36e-07!2;CL:0000818!1.36e-07!2;CL:0000954!1.36e-07!2;CL:0000816!1.36e-07!2;CL:0000815!3.48e-07!2;CL:0000792!3.48e-07!2;CL:0002677!3.48e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000945;1.53e-32;24!CL:0000236;2.96e-19;13!CL:0000542;2.88e-12;53!CL:0000785;1.06e-11;1!CL:0000819;1.06e-11;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,9.12e-33,24;CL:0000826,9.12e-33,24;CL:0000542,2.45e-21,53;CL:0000051,2.45e-21,53;CL:0000236,4.62e-18,14;CL:0000838,6.95e-18,52;CL:0000819,8.62e-12,1;CL:0000988,6.87e-09,177;CL:0002087,7.36e-09,115;CL:0000738,3.03e-07,136;CL:0002031,7.23e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000051;2.88e-12;53!UBERON:0001045;2.96e-11;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060073;1.06e-11;1!DOID:8675;1.06e-11;1!DOID:12603;1.06e-11;1!DOID:0060058;9.54e-10;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060073,8.62e-12,1;DOID:8675,8.62e-12,1;DOID:12603,9.57e-12,1;DOID:0060058,1.01e-09,10 | |||
|ontology_enrichment_uberon=UBERON:0000178!5.19e-12!15;UBERON:0000179!5.19e-12!15;UBERON:0000463!5.19e-12!15;UBERON:0004177!3.66e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001154;2.96e-11;1!UBERON:0001153;2.96e-11;1!UBERON:0009854;2.96e-11;1!UBERON:0002331;1.72e-09;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001154,3.28e-11,1;UBERON:0001153,3.28e-11,1;UBERON:0001045,3.28e-11,1;UBERON:0002331,1.32e-09,10;UBERON:0000358,1.32e-09,10;UBERON:0000307,1.32e-09,10;UBERON:0000091,1.32e-09,10;UBERON:0000087,1.32e-09,10;UBERON:0007010,1.32e-09,10;UBERON:0007806,1.32e-09,10;UBERON:0008780,1.32e-09,10;UBERON:0005728,1.32e-09,10 | |||
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| ||
|short_description=p12@SNED1 | |short_description=p12@SNED1 | ||
}} | }} |
Latest revision as of 09:23, 16 September 2015
Short description: | p12@SNED1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_SNED1_5end |
Coexpression cluster: | C4211_diffuse_CD4_lymphoma_acute_thymus_CD19_appendix |
Association with transcript: | -19bp_to_ENST00000401644_5end |
EntrezGene: | SNED1 |
HGNC: | 24696 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 9.12e-33 | 24 |
pro-B cell | 9.12e-33 | 24 |
lymphocyte | 2.45e-21 | 53 |
common lymphoid progenitor | 2.45e-21 | 53 |
B cell | 4.62e-18 | 14 |
lymphoid lineage restricted progenitor cell | 6.95e-18 | 52 |
B-1 B cell | 8.62e-12 | 1 |
hematopoietic cell | 6.87e-09 | 177 |
nongranular leukocyte | 7.36e-09 | 115 |
leukocyte | 3.03e-07 | 136 |
hematopoietic lineage restricted progenitor cell | 7.23e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
vermiform appendix | 3.28e-11 | 1 |
caecum | 3.28e-11 | 1 |
midgut | 3.28e-11 | 1 |
umbilical cord | 1.32e-09 | 10 |
blastocyst | 1.32e-09 | 10 |
blastula | 1.32e-09 | 10 |
bilaminar disc | 1.32e-09 | 10 |
inner cell mass | 1.32e-09 | 10 |
cleaving embryo | 1.32e-09 | 10 |
connecting stalk | 1.32e-09 | 10 |
inner cell mass derived epiblast | 1.32e-09 | 10 |
extraembryonic mesoderm | 1.32e-09 | 10 |
Ontology term | p-value | n |
---|---|---|
lymphatic system cancer | 8.62e-12 | 1 |
lymphosarcoma | 8.62e-12 | 1 |
acute leukemia | 9.57e-12 | 1 |
lymphoma | 1.01e-09 | 10 |