FFCP PHASE1:Hg19::chr3:55178388..55178399,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:55178388..55178399,- | |||
|coexpression_cluster_id=C510 | |||
|description=CAGE_peak_at_chr3:55178388..55178399,- | |description=CAGE_peak_at_chr3:55178388..55178399,- | ||
|id=chr3:55178388..55178399,- | |id=chr3:55178388..55178399,- | ||
|ontology_enrichment_celltype=CL:0000594!5.00e-14!3;CL:0000188!8.91e-13!9;CL:0000055!6.13e-12!180;CL:0000187!1.60e-08!54;CL:0002539!3.55e-08!10;CL:0000680!5.77e-08!57;CL:0000056!5.77e-08!57;CL:0000355!5.77e-08!57;CL:0000183!1.26e-07!59;CL:0000393!1.82e-07!60;CL:0000211!1.82e-07!60;CL:0000064!2.92e-07!3;CL:0005012!2.92e-07!3;CL:0000067!2.92e-07!3;CL:0002304!2.92e-07!3;CL:0000057!9.44e-07!75 | |ontology_enrichment_celltype=CL:0000594!5.00e-14!3;CL:0000188!8.91e-13!9;CL:0000055!6.13e-12!180;CL:0000187!1.60e-08!54;CL:0002539!3.55e-08!10;CL:0000680!5.77e-08!57;CL:0000056!5.77e-08!57;CL:0000355!5.77e-08!57;CL:0000183!1.26e-07!59;CL:0000393!1.82e-07!60;CL:0000211!1.82e-07!60;CL:0000064!2.92e-07!3;CL:0005012!2.92e-07!3;CL:0000067!2.92e-07!3;CL:0002304!2.92e-07!3;CL:0000057!9.44e-07!75 | ||
|ontology_enrichment_celltype_v019=CL:0000054;6.43e-14;2!CL:0000137;6.43e-14;2!CL:0000092;6.43e-14;2!CL:0002583;1.07e-13;2!CL:0000306;1.69e-07;4!CL:0002222;1.69e-07;4!CL:0002224;1.69e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000054,6.43e-14,2;CL:0000137,6.43e-14,2;CL:0000092,6.43e-14,2;CL:0002583,7.30e-14,2;CL:0000062,4.42e-10,11;CL:0000375,4.42e-10,11;CL:0000335,4.42e-10,11;CL:0000306,1.49e-07,4;CL:0002222,1.49e-07,4;CL:0002224,1.49e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000335;4.62e-10;11 | |||
|ontology_enrichment_disease=DOID:201!2.67e-08!6;DOID:0060100!2.67e-08!6 | |||
|ontology_enrichment_disease_v019=DOID:0060085;2.15e-26;1!DOID:3165;2.15e-26;1!DOID:0060121;2.15e-26;1!DOID:2438;2.15e-26;1!DOID:4418;2.15e-26;1!DOID:3347;5.92e-26;1!DOID:201;1.33e-17;6!DOID:0060100;1.33e-17;6!DOID:200;6.43e-14;2!DOID:4305;6.43e-14;2!DOID:0060072;1.31e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060085,2.16e-26,1;DOID:3165,2.16e-26,1;DOID:0060121,2.16e-26,1;DOID:2438,2.16e-26,1;DOID:4418,2.16e-26,1;DOID:3347,4.61e-26,1;DOID:201,1.22e-17,6;DOID:0060100,1.22e-17,6;DOID:200,6.43e-14,2;DOID:4305,6.43e-14,2;DOID:0060072,1.31e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.55e-09!83;UBERON:0002329!1.55e-09!83;UBERON:0003077!1.55e-09!83;UBERON:0003059!1.55e-09!83;UBERON:0007282!1.55e-09!83;UBERON:0009618!1.55e-09!83;UBERON:0007285!1.55e-09!83;UBERON:0004290!8.96e-09!70;UBERON:0004237!3.55e-08!10;UBERON:0004695!3.55e-08!10;UBERON:0002111!3.55e-08!10;UBERON:0004178!3.55e-08!10;UBERON:0001135!5.85e-08!15;UBERON:0001134!2.61e-07!61;UBERON:0002036!2.61e-07!61;UBERON:0003082!2.61e-07!61;UBERON:0001778!2.92e-07!3;UBERON:0001775!2.92e-07!3;UBERON:0007625!3.39e-07!11;UBERON:0000486!4.07e-07!82;UBERON:0002385!5.15e-07!63;UBERON:0001015!5.15e-07!63;UBERON:0000383!5.15e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0000014;1.31e-07;4!UBERON:0010077;1.69e-07;4!UBERON:0005389;1.69e-07;4!UBERON:0000484;1.69e-07;4!UBERON:0000965;1.69e-07;4!UBERON:0001803;1.69e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000014,1.31e-07,4;UBERON:0010077,1.49e-07,4;UBERON:0005389,1.49e-07,4;UBERON:0000484,1.49e-07,4;UBERON:0002546,1.49e-07,4;UBERON:0000965,1.49e-07,4;UBERON:0001803,1.49e-07,4;UBERON:0003073,1.49e-07,4;UBERON:0005426,1.49e-07,4 | |||
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|short_description=p@chr3:55178388..55178399,- | |short_description=p@chr3:55178388..55178399,- | ||
}} | }} |
Latest revision as of 22:42, 29 July 2015
Short description: | p@chr3:55178388..55178399, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:55178388..55178399, - |
Coexpression cluster: | C510_fibrous_mesothelioma_cholangiocellular_liposarcoma_Fibroblast_mesenchymal_leukemia |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone matrix secreting cell | 6.43e-14 | 2 |
osteocyte | 6.43e-14 | 2 |
osteoclast | 6.43e-14 | 2 |
subcutaneous preadipocyte | 7.30e-14 | 2 |
osteoblast | 4.42e-10 | 11 |
osteoprogenitor cell | 4.42e-10 | 11 |
mesenchyme condensation cell | 4.42e-10 | 11 |
crystallin accumulating cell | 1.49e-07 | 4 |
vertebrate lens cell | 1.49e-07 | 4 |
lens epithelial cell | 1.49e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
zone of skin | 1.31e-07 | 4 |
cuboidal epithelium | 1.49e-07 | 4 |
transparent eye structure | 1.49e-07 | 4 |
simple cuboidal epithelium | 1.49e-07 | 4 |
cranial placode | 1.49e-07 | 4 |
lens of camera-type eye | 1.49e-07 | 4 |
epithelium of lens | 1.49e-07 | 4 |
lens placode | 1.49e-07 | 4 |
lens vesicle | 1.49e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
organ system benign neoplasm | 2.16e-26 | 1 |
skin benign neoplasm | 2.16e-26 | 1 |
integumentary system benign neoplasm | 2.16e-26 | 1 |
dermis tumor | 2.16e-26 | 1 |
cutaneous fibrous histiocytoma | 2.16e-26 | 1 |
osteosarcoma | 4.61e-26 | 1 |
connective tissue cancer | 1.22e-17 | 6 |
musculoskeletal system cancer | 1.22e-17 | 6 |
giant cell tumor | 6.43e-14 | 2 |
bone giant cell tumor | 6.43e-14 | 2 |
benign neoplasm | 1.31e-07 | 4 |