FFCP PHASE1:Hg19::chr12:56349991..56350009,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:56349991..56350009,-
|short_description=p10@PMEL
|description=CAGE_peak_10_at_PMEL_5end
|association_with_transcript=313bp_to_ENST00000550762_5end
|Entre...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6490 | |EntrezGene=6490 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10880 | |HGNC=10880 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=313bp_to_ENST00000550762_5end | |||
|cluster_id=chr12:56349991..56350009,- | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_10_at_PMEL_5end | |||
|id=chr12:56349991..56350009,- | |||
|ontology_enrichment_celltype=CL:0000147!1.21e-43!14;CL:0000148!8.98e-42!10;CL:0000541!8.98e-42!10;CL:0000710!4.14e-20!20;CL:0002567!2.76e-17!3;CL:0000075!1.74e-14!27;CL:0000325!2.84e-14!39;CL:0002077!3.45e-14!33;CL:0000149!1.88e-12!4;CL:0002537!2.28e-10!5;CL:0002322!2.00e-09!5;CL:0000333!1.63e-08!41;CL:0002586!8.77e-08!3;CL:0002541!1.32e-07!3;CL:0000039!1.70e-07!7;CL:0000586!1.70e-07!7;CL:0000133!7.57e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000148;4.19e-60;10!CL:0000147;7.66e-43;14!CL:0002567;2.09e-38;3!CL:0000710;7.10e-30;20!CL:0000075;5.15e-22;27!CL:0002077;2.05e-15;34!CL:0002566;1.61e-13;1!CL:0002537;4.79e-11;5!CL:0000039;3.98e-08;7!CL:0000586;3.98e-08;7!CL:0002253;2.12e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,3.22e-60,10;CL:0000541,3.22e-60,10;CL:0000147,6.35e-43,14;CL:0002567,2.09e-38,3;CL:0000710,6.23e-30,20;CL:0000075,4.68e-22,27;CL:0002077,2.06e-17,34;CL:0000333,1.17e-13,41;CL:0002566,1.61e-13,1;CL:0002537,4.79e-11,5;CL:0000133,1.87e-09,59;CL:0000039,4.12e-08,7;CL:0000586,4.12e-08,7;CL:0000221,1.10e-07,72;CL:0002253,1.99e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1909!6.07e-12!2;DOID:1799!9.15e-07!1;DOID:10165!9.15e-07!1;DOID:1798!9.15e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:1909;5.96e-26;2!DOID:1799;9.73e-14;1!DOID:10165;9.73e-14;1!DOID:1798;9.73e-14;1!DOID:178;1.61e-13;1!DOID:326;1.61e-13;1!DOID:3978;1.61e-13;1!DOID:3394;1.61e-13;1!DOID:5844;1.61e-13;1!DOID:114;2.12e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,7.67e-26,2;DOID:1799,9.73e-14,1;DOID:10165,9.73e-14,1;DOID:1798,9.73e-14,1;DOID:178,1.83e-13,1;DOID:326,1.83e-13,1;DOID:3978,1.83e-13,1;DOID:3394,1.83e-13,1;DOID:5844,1.83e-13,1;DOID:114,2.25e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0005631!2.42e-17!14;UBERON:0000158!2.42e-17!14;UBERON:0003124!1.01e-11!7;UBERON:0000966!8.10e-10!5;UBERON:0005388!8.10e-10!5;UBERON:0001802!8.10e-10!5;UBERON:0000478!9.71e-10!24;UBERON:0004923!7.52e-09!57;UBERON:0001781!8.77e-08!3;UBERON:0001782!8.77e-08!3;UBERON:0005424!8.77e-08!3;UBERON:0000476!1.32e-07!3;UBERON:0000920!1.32e-07!3;UBERON:0000305!1.59e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000305;3.84e-08;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000305,3.84e-08,7;UBERON:0004871,3.14e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.0895585227028483,0,0,0,0,0,0,0,1.33345578013555,4.58386110669933,11.7217447210047,5.13217338068116,1.64523988325318,6.00686115687835,2.85826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0.650756789328606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.95497793895076,7.42411702081597,3.07160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520855522170466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.922255617552241,10.9504326179922,2.06430006651815,0.638002319463839,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,1.41353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19807400299395,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06154382279153,17.413385346243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.09525355585138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354809480650555,0,0,0,0,0,0,0,0,0,0,0,0,0.428859265059938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.0895585227028483,0,0,0,0,0,0,0,1.33345578013555,4.58386110669933,11.7217447210047,5.13217338068116,1.64523988325318,6.00686115687835,2.85826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0.650756789328606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.95497793895076,7.42411702081597,3.07160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520855522170466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.922255617552241,10.9504326179922,2.06430006651815,0.638002319463839,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,1.41353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19807400299395,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06154382279153,17.413385346243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.09525355585138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354809480650555,0,0,0,0,0,0,0,0,0,0,0,0,0.428859265059938,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p10@PMEL | |||
}} | }} |
Latest revision as of 09:01, 19 September 2015
Short description: | p10@PMEL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_PMEL_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 313bp_to_ENST00000550762_5end |
EntrezGene: | PMEL |
HGNC: | 10880 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 3.22e-60 | 10 |
melanoblast | 3.22e-60 | 10 |
pigment cell | 6.35e-43 | 14 |
light melanocyte | 2.09e-38 | 3 |
neurecto-epithelial cell | 6.23e-30 | 20 |
columnar/cuboidal epithelial cell | 4.68e-22 | 27 |
ecto-epithelial cell | 2.06e-17 | 34 |
migratory neural crest cell | 1.17e-13 | 41 |
dark melanocyte | 1.61e-13 | 1 |
amnion mesenchymal stem cell | 4.79e-11 | 5 |
neurectodermal cell | 1.87e-09 | 59 |
germ line cell | 4.12e-08 | 7 |
germ cell | 4.12e-08 | 7 |
ectodermal cell | 1.10e-07 | 72 |
epithelial cell of large intestine | 1.99e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
amnion | 3.84e-08 | 7 |
somatic layer of lateral plate mesoderm | 3.14e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
melanoma | 7.67e-26 | 2 |
islet cell tumor | 9.73e-14 | 1 |
endocrine pancreas cancer | 9.73e-14 | 1 |
pancreatic endocrine carcinoma | 9.73e-14 | 1 |
vascular disease | 1.83e-13 | 1 |
ischemia | 1.83e-13 | 1 |
extrinsic cardiomyopathy | 1.83e-13 | 1 |
myocardial ischemia | 1.83e-13 | 1 |
myocardial infarction | 1.83e-13 | 1 |
heart disease | 2.25e-07 | 2 |