FFCP PHASE1:Hg19::chr12:63328897..63328942,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:63328897..63328942,-
|short_description=p1@PPM1H
|description=CAGE_peak_1_at_PPM1H_5end
|association_with_transcript=0bp_to_uc001srm.2_5end
|EntrezGene=5...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57460 | |EntrezGene=57460 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18583 | |HGNC=18583 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc001srm.2_5end | |||
|cluster_id=chr12:63328897..63328942,- | |||
|coexpression_cluster_id=C1159 | |||
|description=CAGE_peak_1_at_PPM1H_5end | |||
|id=chr12:63328897..63328942,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!3.61e-12!106;DOID:0050687!2.73e-08!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.19e-12,106;DOID:0050687,4.25e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0007023!5.24e-25!115;UBERON:0001049!7.58e-22!57;UBERON:0005068!7.58e-22!57;UBERON:0006241!7.58e-22!57;UBERON:0007135!7.58e-22!57;UBERON:0005743!6.56e-21!86;UBERON:0002616!9.38e-20!59;UBERON:0001017!1.96e-19!82;UBERON:0000955!1.68e-17!69;UBERON:0006238!1.68e-17!69;UBERON:0000073!2.58e-17!94;UBERON:0001016!2.58e-17!94;UBERON:0002780!5.18e-17!41;UBERON:0001890!5.18e-17!41;UBERON:0006240!5.18e-17!41;UBERON:0003080!5.92e-17!42;UBERON:0003075!7.48e-16!86;UBERON:0007284!7.48e-16!86;UBERON:0001893!1.48e-13!34;UBERON:0002346!2.08e-13!90;UBERON:0002020!2.35e-13!34;UBERON:0003528!2.35e-13!34;UBERON:0002791!5.14e-13!33;UBERON:0001869!2.06e-12!32;UBERON:0003056!5.73e-12!61;UBERON:0002619!3.20e-11!22;UBERON:0001950!1.46e-10!20;UBERON:0000062!1.05e-09!511;UBERON:0000956!1.42e-09!25;UBERON:0000203!1.42e-09!25;UBERON:0000033!1.33e-08!123;UBERON:0000025!1.65e-08!194;UBERON:0000153!1.95e-08!129;UBERON:0007811!1.95e-08!129;UBERON:0000477!3.36e-07!286;UBERON:0004111!8.00e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;8.86e-13;41!UBERON:0001890;8.86e-13;41!UBERON:0000073;4.00e-12;53!UBERON:0002616;4.00e-12;53!UBERON:0002619;9.22e-12;22!UBERON:0001893;1.23e-11;34!UBERON:0003528;2.73e-11;34!UBERON:0002020;2.73e-11;34!UBERON:0002791;3.57e-11;32!UBERON:0001869;3.82e-11;32!UBERON:0001950;4.92e-11;20!UBERON:0000956;2.21e-09;25!UBERON:0000203;2.21e-09;25!UBERON:0001017;8.21e-09;75!UBERON:0000955;3.70e-08;68!UBERON:0007023;2.23e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.11e-24,114;UBERON:0001049,4.97e-22,56;UBERON:0005068,4.97e-22,56;UBERON:0006241,4.97e-22,56;UBERON:0007135,4.97e-22,56;UBERON:0000073,9.10e-21,53;UBERON:0002616,9.10e-21,53;UBERON:0001017,4.20e-19,81;UBERON:0000955,1.67e-17,68;UBERON:0006238,1.67e-17,68;UBERON:0002780,2.90e-17,41;UBERON:0001890,2.90e-17,41;UBERON:0003080,2.90e-17,41;UBERON:0006240,2.90e-17,41;UBERON:0003075,1.32e-15,82;UBERON:0007284,1.32e-15,82;UBERON:0001016,2.96e-15,89;UBERON:0011216,1.29e-14,223;UBERON:0001893,1.24e-13,34;UBERON:0003528,1.99e-13,34;UBERON:0002020,1.99e-13,34;UBERON:0002346,2.02e-13,86;UBERON:0002791,1.72e-12,32;UBERON:0001869,1.94e-12,32;UBERON:0003056,2.55e-12,61;UBERON:0002619,8.97e-12,22;UBERON:0001950,4.46e-11,20;UBERON:0000956,1.85e-09,25;UBERON:0000203,1.85e-09,25;UBERON:0010371,6.86e-09,104;UBERON:0000025,1.90e-08,192;UBERON:0010314,1.39e-07,132;UBERON:0004111,7.37e-07,240 | |||
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| ||
|short_description=p1@PPM1H | |||
}} | }} |
Latest revision as of 19:14, 19 September 2015
Short description: | p1@PPM1H |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PPM1H_5end |
Coexpression cluster: | C1159_Mast_cerebellum_colon_choriocarcinoma_H9_Melanocyte_occipital |
Association with transcript: | 0bp_to_uc001srm.2_5end |
EntrezGene: | PPM1H |
HGNC: | 18583 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 2.11e-24 | 114 |
neural tube | 4.97e-22 | 56 |
neural rod | 4.97e-22 | 56 |
future spinal cord | 4.97e-22 | 56 |
neural keel | 4.97e-22 | 56 |
regional part of nervous system | 9.10e-21 | 53 |
regional part of brain | 9.10e-21 | 53 |
central nervous system | 4.20e-19 | 81 |
brain | 1.67e-17 | 68 |
future brain | 1.67e-17 | 68 |
regional part of forebrain | 2.90e-17 | 41 |
forebrain | 2.90e-17 | 41 |
anterior neural tube | 2.90e-17 | 41 |
future forebrain | 2.90e-17 | 41 |
neural plate | 1.32e-15 | 82 |
presumptive neural plate | 1.32e-15 | 82 |
nervous system | 2.96e-15 | 89 |
organ system subdivision | 1.29e-14 | 223 |
telencephalon | 1.24e-13 | 34 |
brain grey matter | 1.99e-13 | 34 |
gray matter | 1.99e-13 | 34 |
neurectoderm | 2.02e-13 | 86 |
regional part of telencephalon | 1.72e-12 | 32 |
cerebral hemisphere | 1.94e-12 | 32 |
pre-chordal neural plate | 2.55e-12 | 61 |
regional part of cerebral cortex | 8.97e-12 | 22 |
neocortex | 4.46e-11 | 20 |
cerebral cortex | 1.85e-09 | 25 |
pallium | 1.85e-09 | 25 |
ecto-epithelium | 6.86e-09 | 104 |
tube | 1.90e-08 | 192 |
structure with developmental contribution from neural crest | 1.39e-07 | 132 |
anatomical conduit | 7.37e-07 | 240 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.19e-12 | 106 |
cell type cancer | 4.25e-08 | 143 |