FFCP PHASE1:Hg19::chr12:66357317..66357328,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:66357317..66357328,+
|short_description=p19@HMGA2
|description=CAGE_peak_19_at_HMGA2_5end
|association_with_transcript=-198bp_to_AK311443_5end
|EntrezGen...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8091 | |EntrezGene=8091 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=5009 | |HGNC=5009 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-198bp_to_AK311443_5end | |||
|cluster_id=chr12:66357317..66357328,+ | |||
|description=CAGE_peak_19_at_HMGA2_5end | |||
|id=chr12:66357317..66357328,+ | |||
|ontology_enrichment_celltype=CL:0000548!2.99e-10!679;CL:0000004!2.99e-10!679;CL:0000255!2.99e-10!679;CL:0000012!5.88e-10!682;CL:0000055!3.54e-09!180;CL:0002371!1.50e-07!591;CL:0000057!2.41e-07!75;CL:0002540!3.04e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002573;2.64e-10;2!CL:0002336;3.69e-08;1!CL:0002261;3.69e-08;1!CL:0002170;3.69e-08;1!CL:0002539;8.88e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002573,2.15e-10,2;CL:0002336,5.43e-08,1;CL:0002261,5.43e-08,1;CL:0002170,5.43e-08,1;CL:0002539,9.44e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060085;3.69e-08;1!DOID:3165;3.69e-08;1!DOID:0060121;3.69e-08;1!DOID:2438;3.69e-08;1!DOID:4418;3.69e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060085,2.17e-08,1;DOID:3165,2.17e-08,1;DOID:0060121,2.17e-08,1;DOID:2438,2.17e-08,1;DOID:4418,2.17e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0003102!3.04e-08!95;UBERON:0005256!1.83e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0004237;8.88e-07;10!UBERON:0004695;8.88e-07;10!UBERON:0002111;8.88e-07;10!UBERON:0004178;8.88e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004237,9.44e-07,10;UBERON:0004695,9.44e-07,10;UBERON:0002111,9.44e-07,10;UBERON:0004178,9.44e-07,10 | |||
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| ||
|short_description=p19@HMGA2 | |||
}} | }} |
Latest revision as of 23:43, 19 September 2015
Short description: | p19@HMGA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_HMGA2_5end |
Coexpression cluster: | NA |
Association with transcript: | -198bp_to_AK311443_5end |
EntrezGene: | HMGA2 |
HGNC: | 5009 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Schwann cell | 2.15e-10 | 2 |
buccal mucosa cell | 5.43e-08 | 1 |
endothelial cell of viscerocranial mucosa | 5.43e-08 | 1 |
keratinized cell of the oral mucosa | 5.43e-08 | 1 |
aortic smooth muscle cell | 9.44e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
blood vessel smooth muscle | 9.44e-07 | 10 |
arterial system smooth muscle | 9.44e-07 | 10 |
artery smooth muscle tissue | 9.44e-07 | 10 |
aorta smooth muscle tissue | 9.44e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
organ system benign neoplasm | 2.17e-08 | 1 |
skin benign neoplasm | 2.17e-08 | 1 |
integumentary system benign neoplasm | 2.17e-08 | 1 |
dermis tumor | 2.17e-08 | 1 |
cutaneous fibrous histiocytoma | 2.17e-08 | 1 |