FFCP PHASE1:Hg19::chr12:6879133..6879172,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:6879133..6879172,-
|short_description=p@chr12:6879133..6879172,-
|description=CAGE_peak_at_chr12:6879133..6879172,-
|association_with_transcript=NA
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:6879133..6879172,- | |||
|coexpression_cluster_id=C3321 | |||
|description=CAGE_peak_at_chr12:6879133..6879172,- | |||
|id=chr12:6879133..6879172,- | |||
|ontology_enrichment_celltype=CL:0000055!1.97e-20!180;CL:0002321!2.34e-17!248;CL:0000220!2.57e-17!246;CL:0000222!6.31e-11!119;CL:0000057!1.38e-09!75;CL:0000066!6.69e-08!254;CL:0000133!1.38e-07!59;CL:0000183!3.84e-07!59;CL:0000393!9.82e-07!60;CL:0000211!9.82e-07!60 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.21e-17,250;CL:0000222,2.85e-11,121;CL:0000057,9.63e-10,76;CL:0000133,1.52e-07,59;CL:0000066,2.32e-07,253;CL:0002078,7.16e-07,45;CL:0000393,7.67e-07,61;CL:0000211,7.67e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!8.01e-17!365;UBERON:0000119!8.01e-16!312;UBERON:0000483!1.89e-15!309;UBERON:0000481!1.92e-15!347;UBERON:0000468!4.60e-14!659;UBERON:0002100!1.27e-13!216;UBERON:0000922!3.27e-11!612;UBERON:0000477!3.28e-11!286;UBERON:0005256!5.85e-11!143;UBERON:0003104!3.19e-10!238;UBERON:0009142!3.19e-10!238;UBERON:0003914!4.22e-10!118;UBERON:0002050!5.50e-10!605;UBERON:0005423!5.50e-10!605;UBERON:0000923!1.03e-09!604;UBERON:0005291!1.03e-09!604;UBERON:0006598!1.03e-09!604;UBERON:0002532!1.03e-09!604;UBERON:0000480!1.03e-09!626;UBERON:0000467!1.04e-09!625;UBERON:0000490!1.45e-09!138;UBERON:0000025!1.61e-08!194;UBERON:0004111!1.83e-08!241;UBERON:0002049!2.29e-08!79;UBERON:0007798!2.29e-08!79;UBERON:0000064!2.50e-08!219;UBERON:0000914!6.05e-08!83;UBERON:0002329!6.05e-08!83;UBERON:0003077!6.05e-08!83;UBERON:0003059!6.05e-08!83;UBERON:0007282!6.05e-08!83;UBERON:0009618!6.05e-08!83;UBERON:0007285!6.05e-08!83;UBERON:0004290!1.16e-07!70;UBERON:0004872!1.27e-07!84;UBERON:0000486!1.90e-07!82;UBERON:0009569!2.82e-07!113;UBERON:0004535!7.79e-07!110 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.94e-15,309;UBERON:0000483,4.54e-15,306;UBERON:0003104,3.17e-13,160;UBERON:0009142,3.17e-13,160;UBERON:0002100,2.96e-12,199;UBERON:0000490,6.94e-12,148;UBERON:0005256,1.48e-10,122;UBERON:0007503,7.34e-10,78;UBERON:0003914,8.27e-10,117;UBERON:0000922,7.24e-09,592;UBERON:0002049,2.63e-08,78;UBERON:0007798,2.63e-08,78;UBERON:0007524,2.76e-08,73;UBERON:0005423,4.13e-08,581;UBERON:0004111,5.89e-08,240;UBERON:0003077,6.05e-08,72;UBERON:0007285,6.05e-08,72;UBERON:0000025,8.35e-08,192;UBERON:0002329,9.31e-08,71;UBERON:0003059,9.31e-08,71;UBERON:0007282,9.31e-08,71;UBERON:0004290,9.31e-08,71;UBERON:0009618,9.31e-08,71;UBERON:0004872,1.46e-07,83;UBERON:0000486,1.78e-07,83;UBERON:0000923,2.39e-07,560;UBERON:0010316,2.39e-07,560;UBERON:0005291,2.39e-07,560;UBERON:0006598,2.39e-07,560;UBERON:0010317,2.39e-07,560;UBERON:0002532,2.39e-07,560;UBERON:0002050,4.11e-07,564;UBERON:0009569,5.60e-07,112 | |||
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| ||
|short_description=p@chr12:6879133..6879172,- | |||
}} | }} |
Latest revision as of 11:43, 24 July 2015
Short description: | p@chr12:6879133..6879172, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:6879133..6879172, - |
Coexpression cluster: | C3321_Mesenchymal_teratocarcinoma_Renal_leiomyoblastoma_Fibroblast_Wilms_neuroectodermal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.21e-17 | 250 |
mesodermal cell | 2.85e-11 | 121 |
fibroblast | 9.63e-10 | 76 |
neurectodermal cell | 1.52e-07 | 59 |
epithelial cell | 2.32e-07 | 253 |
meso-epithelial cell | 7.16e-07 | 45 |
electrically responsive cell | 7.67e-07 | 61 |
electrically active cell | 7.67e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
cell layer | 1.94e-15 | 309 |
epithelium | 4.54e-15 | 306 |
mesenchyme | 3.17e-13 | 160 |
entire embryonic mesenchyme | 3.17e-13 | 160 |
trunk | 2.96e-12 | 199 |
unilaminar epithelium | 6.94e-12 | 148 |
trunk mesenchyme | 1.48e-10 | 122 |
epithelial vesicle | 7.34e-10 | 78 |
epithelial tube | 8.27e-10 | 117 |
embryo | 7.24e-09 | 592 |
vasculature | 2.63e-08 | 78 |
vascular system | 2.63e-08 | 78 |
dense mesenchyme tissue | 2.76e-08 | 73 |
developing anatomical structure | 4.13e-08 | 581 |
anatomical conduit | 5.89e-08 | 240 |
paraxial mesoderm | 6.05e-08 | 72 |
presumptive paraxial mesoderm | 6.05e-08 | 72 |
tube | 8.35e-08 | 192 |
somite | 9.31e-08 | 71 |
presomitic mesoderm | 9.31e-08 | 71 |
presumptive segmental plate | 9.31e-08 | 71 |
dermomyotome | 9.31e-08 | 71 |
trunk paraxial mesoderm | 9.31e-08 | 71 |
splanchnic layer of lateral plate mesoderm | 1.46e-07 | 83 |
multilaminar epithelium | 1.78e-07 | 83 |
germ layer | 2.39e-07 | 560 |
germ layer / neural crest | 2.39e-07 | 560 |
embryonic tissue | 2.39e-07 | 560 |
presumptive structure | 2.39e-07 | 560 |
germ layer / neural crest derived structure | 2.39e-07 | 560 |
epiblast (generic) | 2.39e-07 | 560 |
embryonic structure | 4.11e-07 | 564 |
subdivision of trunk | 5.60e-07 | 112 |