FFCP PHASE1:Hg19::chr21:47518695..47518709,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1292 | |EntrezGene=1292 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2212 | |HGNC=2212 | ||
|TSSclassifier=strong | |||
|UniProt=C9JH44 | |UniProt=C9JH44 | ||
|association_with_transcript=-1bp_to_ENST00000436769_5end | |association_with_transcript=-1bp_to_ENST00000436769_5end | ||
|cluster_id=chr21:47518695..47518709,+ | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_6_at_COL6A2_5end | |description=CAGE_peak_6_at_COL6A2_5end | ||
|id=chr21:47518695..47518709,+ | |id=chr21:47518695..47518709,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.19e-53!180;CL:0000057!3.81e-32!75;CL:0000680!1.79e-26!57;CL:0000056!1.79e-26!57;CL:0000355!1.79e-26!57;CL:0000187!1.87e-25!54;CL:0000183!2.56e-24!59;CL:0000048!1.06e-21!430;CL:0000393!8.89e-21!60;CL:0000211!8.89e-21!60;CL:0000192!1.26e-20!42;CL:0000514!1.26e-20!42;CL:0000723!1.79e-20!436;CL:0000034!6.58e-19!444;CL:0000359!4.02e-16!32;CL:0002371!4.48e-13!591;CL:0002620!1.91e-12!23;CL:0002320!1.60e-09!365;CL:0000144!7.98e-09!625;CL:0002570!4.69e-08!8;CL:0000134!1.34e-07!358;CL:0002334!1.83e-07!12;CL:0000222!2.55e-07!119;CL:0002539!5.86e-07!10 | |ontology_enrichment_celltype=CL:0000055!1.19e-53!180;CL:0000057!3.81e-32!75;CL:0000680!1.79e-26!57;CL:0000056!1.79e-26!57;CL:0000355!1.79e-26!57;CL:0000187!1.87e-25!54;CL:0000183!2.56e-24!59;CL:0000048!1.06e-21!430;CL:0000393!8.89e-21!60;CL:0000211!8.89e-21!60;CL:0000192!1.26e-20!42;CL:0000514!1.26e-20!42;CL:0000723!1.79e-20!436;CL:0000034!6.58e-19!444;CL:0000359!4.02e-16!32;CL:0002371!4.48e-13!591;CL:0002620!1.91e-12!23;CL:0002320!1.60e-09!365;CL:0000144!7.98e-09!625;CL:0002570!4.69e-08!8;CL:0000134!1.34e-07!358;CL:0002334!1.83e-07!12;CL:0000222!2.55e-07!119;CL:0002539!5.86e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000359;6.72e-17;32!CL:0000192;1.04e-15;43!CL:0000057;1.70e-15;73!CL:0002620;2.19e-15;23!CL:0000187;8.73e-15;55!CL:0000393;5.99e-13;61!CL:0000211;5.99e-13;61!CL:0000134;2.18e-12;55!CL:0000723;3.80e-12;61!CL:0000048;5.25e-11;58!CL:0002320;1.66e-10;188!CL:0002570;1.10e-09;8!CL:0000034;1.76e-08;69!CL:0002539;3.17e-08;10!CL:0002334;7.11e-08;12!CL:0000188;7.82e-08;9!CL:0000499;3.49e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.54e-36,76;CL:0000048,7.95e-33,427;CL:0000723,1.35e-31,433;CL:0000034,5.17e-30,441;CL:0000680,3.04e-27,58;CL:0000056,3.04e-27,58;CL:0000355,3.04e-27,58;CL:0000187,5.17e-27,55;CL:0000393,1.10e-22,61;CL:0000211,1.10e-22,61;CL:0000192,1.13e-21,43;CL:0000514,1.13e-21,43;CL:0000359,9.18e-18,32;CL:0002320,1.68e-16,361;CL:0002620,2.22e-15,23;CL:0000134,1.51e-13,354;CL:0000219,1.35e-11,386;CL:0002570,1.06e-09,8;CL:0002539,2.48e-08,10;CL:0002334,6.49e-08,12;CL:0000188,8.74e-08,9;CL:0000222,9.78e-08,121;CL:0000499,3.02e-07,28 | |||
|ontology_enrichment_development_v019=CL:0000514;1.04e-15;43!CL:0000355;5.03e-14;58 | |||
|ontology_enrichment_disease=DOID:2394!1.88e-07!14 | |ontology_enrichment_disease=DOID:2394!1.88e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;4.40e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.75e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!4.04e-34!83;UBERON:0002329!4.04e-34!83;UBERON:0003077!4.04e-34!83;UBERON:0003059!4.04e-34!83;UBERON:0007282!4.04e-34!83;UBERON:0009618!4.04e-34!83;UBERON:0007285!4.04e-34!83;UBERON:0004290!3.02e-32!70;UBERON:0002385!1.62e-26!63;UBERON:0001015!1.62e-26!63;UBERON:0000383!1.62e-26!63;UBERON:0001134!4.30e-26!61;UBERON:0002036!4.30e-26!61;UBERON:0003082!4.30e-26!61;UBERON:0000486!1.03e-25!82;UBERON:0005256!2.40e-21!143;UBERON:0002199!9.68e-15!45;UBERON:0002416!9.68e-15!45;UBERON:0003102!2.92e-14!95;UBERON:0002100!1.42e-12!216;UBERON:0002097!2.90e-11!40;UBERON:0001013!5.15e-11!14;UBERON:0004573!1.28e-10!33;UBERON:0004571!1.28e-10!33;UBERON:0000475!1.69e-10!365;UBERON:0001637!2.58e-10!42;UBERON:0003509!2.58e-10!42;UBERON:0004572!2.58e-10!42;UBERON:0004872!3.69e-10!84;UBERON:0000490!5.76e-10!138;UBERON:0002384!6.74e-10!375;UBERON:0003104!1.67e-09!238;UBERON:0009142!1.67e-09!238;UBERON:0002049!7.92e-09!79;UBERON:0007798!7.92e-09!79;UBERON:0001135!1.19e-08!15;UBERON:0001981!2.26e-08!60;UBERON:0007500!2.26e-08!60;UBERON:0004537!2.26e-08!60;UBERON:0006965!2.26e-08!60;UBERON:0004535!9.60e-08!110;UBERON:0001009!9.92e-08!113;UBERON:0002204!1.01e-07!167;UBERON:0002067!1.44e-07!9;UBERON:0004016!1.44e-07!9;UBERON:0010083!1.44e-07!9;UBERON:0000055!4.44e-07!69;UBERON:0004237!5.86e-07!10;UBERON:0004695!5.86e-07!10;UBERON:0002111!5.86e-07!10;UBERON:0004178!5.86e-07!10 | |ontology_enrichment_uberon=UBERON:0000914!4.04e-34!83;UBERON:0002329!4.04e-34!83;UBERON:0003077!4.04e-34!83;UBERON:0003059!4.04e-34!83;UBERON:0007282!4.04e-34!83;UBERON:0009618!4.04e-34!83;UBERON:0007285!4.04e-34!83;UBERON:0004290!3.02e-32!70;UBERON:0002385!1.62e-26!63;UBERON:0001015!1.62e-26!63;UBERON:0000383!1.62e-26!63;UBERON:0001134!4.30e-26!61;UBERON:0002036!4.30e-26!61;UBERON:0003082!4.30e-26!61;UBERON:0000486!1.03e-25!82;UBERON:0005256!2.40e-21!143;UBERON:0002199!9.68e-15!45;UBERON:0002416!9.68e-15!45;UBERON:0003102!2.92e-14!95;UBERON:0002100!1.42e-12!216;UBERON:0002097!2.90e-11!40;UBERON:0001013!5.15e-11!14;UBERON:0004573!1.28e-10!33;UBERON:0004571!1.28e-10!33;UBERON:0000475!1.69e-10!365;UBERON:0001637!2.58e-10!42;UBERON:0003509!2.58e-10!42;UBERON:0004572!2.58e-10!42;UBERON:0004872!3.69e-10!84;UBERON:0000490!5.76e-10!138;UBERON:0002384!6.74e-10!375;UBERON:0003104!1.67e-09!238;UBERON:0009142!1.67e-09!238;UBERON:0002049!7.92e-09!79;UBERON:0007798!7.92e-09!79;UBERON:0001135!1.19e-08!15;UBERON:0001981!2.26e-08!60;UBERON:0007500!2.26e-08!60;UBERON:0004537!2.26e-08!60;UBERON:0006965!2.26e-08!60;UBERON:0004535!9.60e-08!110;UBERON:0001009!9.92e-08!113;UBERON:0002204!1.01e-07!167;UBERON:0002067!1.44e-07!9;UBERON:0004016!1.44e-07!9;UBERON:0010083!1.44e-07!9;UBERON:0000055!4.44e-07!69;UBERON:0004237!5.86e-07!10;UBERON:0004695!5.86e-07!10;UBERON:0002111!5.86e-07!10;UBERON:0004178!5.86e-07!10 | ||
|ontology_enrichment_uberon_v019=UBERON:0002385;2.41e-13;31!UBERON:0001015;2.41e-13;31!UBERON:0000383;2.41e-13;31!UBERON:0002199;2.22e-12;46!UBERON:0002416;2.22e-12;46!UBERON:0002384;4.81e-12;198!UBERON:0001013;4.99e-12;14!UBERON:0003102;1.54e-11;50!UBERON:0002097;3.77e-11;41!UBERON:0001135;1.84e-09;15!UBERON:0004573;3.53e-09;33!UBERON:0004571;3.53e-09;33!UBERON:0002067;3.61e-09;9!UBERON:0002204;8.47e-09;70!UBERON:0004237;3.17e-08;10!UBERON:0004695;3.17e-08;10!UBERON:0002111;3.17e-08;10!UBERON:0004178;3.17e-08;10!UBERON:0001637;3.80e-07;42!UBERON:0003509;3.80e-07;42!UBERON:0004572;3.80e-07;42!UBERON:0002072;7.88e-07;5 | |||
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| ||
|short_description=p6@COL6A2 | |short_description=p6@COL6A2 | ||
}} | }} |
Latest revision as of 22:45, 18 September 2015
Short description: | p6@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -1bp_to_ENST00000436769_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | C9JH44 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.54e-36 | 76 |
multi fate stem cell | 7.95e-33 | 427 |
somatic stem cell | 1.35e-31 | 433 |
stem cell | 5.17e-30 | 441 |
muscle precursor cell | 3.04e-27 | 58 |
myoblast | 3.04e-27 | 58 |
multi-potent skeletal muscle stem cell | 3.04e-27 | 58 |
muscle cell | 5.17e-27 | 55 |
electrically responsive cell | 1.10e-22 | 61 |
electrically active cell | 1.10e-22 | 61 |
smooth muscle cell | 1.13e-21 | 43 |
smooth muscle myoblast | 1.13e-21 | 43 |
vascular associated smooth muscle cell | 9.18e-18 | 32 |
connective tissue cell | 1.68e-16 | 361 |
skin fibroblast | 2.22e-15 | 23 |
mesenchymal cell | 1.51e-13 | 354 |
motile cell | 1.35e-11 | 386 |
mesenchymal stem cell of adipose | 1.06e-09 | 8 |
aortic smooth muscle cell | 2.48e-08 | 10 |
preadipocyte | 6.49e-08 | 12 |
cell of skeletal muscle | 8.74e-08 | 9 |
mesodermal cell | 9.78e-08 | 121 |
stromal cell | 3.02e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.75e-08 | 14 |