FFCP PHASE1:Hg19::chr2:113033164..113033219,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=376940 | |EntrezGene=376940 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24762 | |HGNC=24762 | ||
|TSSclassifier=strong | |||
|UniProt=P61129,F5H110,Q6ZN12 | |UniProt=P61129,F5H110,Q6ZN12 | ||
|association_with_transcript=0bp_to_ENST00000343936,ENST00000409871,ENST00000542974,NM_198581,uc002thq.1_5end | |association_with_transcript=0bp_to_ENST00000343936,ENST00000409871,ENST00000542974,NM_198581,uc002thq.1_5end | ||
|cluster_id=chr2:113033164..113033219,+ | |||
|coexpression_cluster_id=C1743 | |||
|description=CAGE_peak_1_at_ZC3H6_5end | |description=CAGE_peak_1_at_ZC3H6_5end | ||
|id=chr2:113033164..113033219,+ | |id=chr2:113033164..113033219,+ | ||
|ontology_enrichment_celltype=CL:0000738!8.67e-11!140;CL:0000791!1.00e-09!18;CL:0000789!1.00e-09!18;CL:0002420!1.00e-09!18;CL:0002419!1.00e-09!18;CL:0000790!1.00e-09!18;CL:0000542!8.07e-09!53;CL:0000051!8.07e-09!53;CL:0000838!1.05e-08!52;CL:0002031!1.08e-08!124;CL:0002087!2.92e-08!119;CL:0000084!4.61e-07!25;CL:0000827!4.61e-07!25;CL:0000625!7.70e-07!11 | |ontology_enrichment_celltype=CL:0000738!8.67e-11!140;CL:0000791!1.00e-09!18;CL:0000789!1.00e-09!18;CL:0002420!1.00e-09!18;CL:0002419!1.00e-09!18;CL:0000790!1.00e-09!18;CL:0000542!8.07e-09!53;CL:0000051!8.07e-09!53;CL:0000838!1.05e-08!52;CL:0002031!1.08e-08!124;CL:0002087!2.92e-08!119;CL:0000084!4.61e-07!25;CL:0000827!4.61e-07!25;CL:0000625!7.70e-07!11 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.17e-09;18!CL:0000789;1.17e-09;18!CL:0002419;1.17e-09;18!CL:0000084;5.02e-07;25!CL:0000625;7.91e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,7.90e-12,136;CL:0000791,1.00e-09,18;CL:0000789,1.00e-09,18;CL:0002420,1.00e-09,18;CL:0002419,1.00e-09,18;CL:0000790,1.00e-09,18;CL:0002031,1.17e-09,120;CL:0002087,3.23e-09,115;CL:0000542,8.06e-09,53;CL:0000051,8.06e-09,53;CL:0000838,1.05e-08,52;CL:0000084,4.61e-07,25;CL:0000827,4.61e-07,25;CL:0000625,7.70e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;1.17e-09;18!UBERON:0006601;2.96e-08;82 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.24e-39!115;UBERON:0001049!7.76e-24!57;UBERON:0005068!7.76e-24!57;UBERON:0006241!7.76e-24!57;UBERON:0007135!7.76e-24!57;UBERON:0000073!2.51e-21!94;UBERON:0001016!2.51e-21!94;UBERON:0001017!2.65e-21!82;UBERON:0005743!1.82e-20!86;UBERON:0003080!3.01e-20!42;UBERON:0002780!4.46e-20!41;UBERON:0001890!4.46e-20!41;UBERON:0006240!4.46e-20!41;UBERON:0000955!5.34e-19!69;UBERON:0006238!5.34e-19!69;UBERON:0002616!1.07e-18!59;UBERON:0001893!5.19e-16!34;UBERON:0002020!5.85e-16!34;UBERON:0003528!5.85e-16!34;UBERON:0002791!1.38e-15!33;UBERON:0002346!2.89e-15!90;UBERON:0001869!7.13e-15!32;UBERON:0003075!1.07e-14!86;UBERON:0007284!1.07e-14!86;UBERON:0002619!5.81e-12!22;UBERON:0003056!9.92e-12!61;UBERON:0000956!4.05e-11!25;UBERON:0000203!4.05e-11!25;UBERON:0001950!5.41e-11!20;UBERON:0000924!1.72e-10!173;UBERON:0006601!1.72e-10!173;UBERON:0004121!5.70e-10!169;UBERON:0000153!2.81e-09!129;UBERON:0007811!2.81e-09!129;UBERON:0000033!5.29e-08!123 | |ontology_enrichment_uberon=UBERON:0007023!1.24e-39!115;UBERON:0001049!7.76e-24!57;UBERON:0005068!7.76e-24!57;UBERON:0006241!7.76e-24!57;UBERON:0007135!7.76e-24!57;UBERON:0000073!2.51e-21!94;UBERON:0001016!2.51e-21!94;UBERON:0001017!2.65e-21!82;UBERON:0005743!1.82e-20!86;UBERON:0003080!3.01e-20!42;UBERON:0002780!4.46e-20!41;UBERON:0001890!4.46e-20!41;UBERON:0006240!4.46e-20!41;UBERON:0000955!5.34e-19!69;UBERON:0006238!5.34e-19!69;UBERON:0002616!1.07e-18!59;UBERON:0001893!5.19e-16!34;UBERON:0002020!5.85e-16!34;UBERON:0003528!5.85e-16!34;UBERON:0002791!1.38e-15!33;UBERON:0002346!2.89e-15!90;UBERON:0001869!7.13e-15!32;UBERON:0003075!1.07e-14!86;UBERON:0007284!1.07e-14!86;UBERON:0002619!5.81e-12!22;UBERON:0003056!9.92e-12!61;UBERON:0000956!4.05e-11!25;UBERON:0000203!4.05e-11!25;UBERON:0001950!5.41e-11!20;UBERON:0000924!1.72e-10!173;UBERON:0006601!1.72e-10!173;UBERON:0004121!5.70e-10!169;UBERON:0000153!2.81e-09!129;UBERON:0007811!2.81e-09!129;UBERON:0000033!5.29e-08!123 | ||
|ontology_enrichment_uberon_v019=UBERON:0002780;9.75e-15;41!UBERON:0001890;9.75e-15;41!UBERON:0002791;7.85e-14;32!UBERON:0001893;8.34e-14;34!UBERON:0003528;9.29e-14;34!UBERON:0002020;9.29e-14;34!UBERON:0001869;1.23e-13;32!UBERON:0000073;1.91e-13;53!UBERON:0002616;1.91e-13;53!UBERON:0002619;4.92e-12;22!UBERON:0000956;3.37e-11;25!UBERON:0000203;3.37e-11;25!UBERON:0001950;4.49e-11;20!UBERON:0007023;1.70e-10;114!UBERON:0000955;3.22e-09;68!UBERON:0001017;5.34e-09;75!UBERON:0001016;5.75e-09;83 | |||
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| ||
|short_description=p1@ZC3H6 | |short_description=p1@ZC3H6 | ||
}} | }} |
Latest revision as of 08:48, 16 September 2015
Short description: | p1@ZC3H6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ZC3H6_5end |
Coexpression cluster: | C1743_cerebellum_pituitary_pineal_lung_parietal_occipital_CD4 |
Association with transcript: | 0bp_to_ENST00000343936, ENST00000409871, ENST00000542974, NM_198581, uc002thq.1_5end |
EntrezGene: | ZC3H6 |
HGNC: | 24762 |
UniProt: | P61129F5H110Q6ZN12 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 7.90e-12 | 136 |
mature alpha-beta T cell | 1.00e-09 | 18 |
alpha-beta T cell | 1.00e-09 | 18 |
immature T cell | 1.00e-09 | 18 |
mature T cell | 1.00e-09 | 18 |
immature alpha-beta T cell | 1.00e-09 | 18 |
hematopoietic lineage restricted progenitor cell | 1.17e-09 | 120 |
nongranular leukocyte | 3.23e-09 | 115 |
lymphocyte | 8.06e-09 | 53 |
common lymphoid progenitor | 8.06e-09 | 53 |
lymphoid lineage restricted progenitor cell | 1.05e-08 | 52 |
T cell | 4.61e-07 | 25 |
pro-T cell | 4.61e-07 | 25 |
CD8-positive, alpha-beta T cell | 7.70e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.78e-39 | 114 |
neural tube | 1.21e-23 | 56 |
neural rod | 1.21e-23 | 56 |
future spinal cord | 1.21e-23 | 56 |
neural keel | 1.21e-23 | 56 |
regional part of nervous system | 3.41e-22 | 53 |
regional part of brain | 3.41e-22 | 53 |
nervous system | 7.10e-22 | 89 |
central nervous system | 4.48e-21 | 81 |
regional part of forebrain | 4.46e-20 | 41 |
forebrain | 4.46e-20 | 41 |
anterior neural tube | 4.46e-20 | 41 |
future forebrain | 4.46e-20 | 41 |
brain | 8.87e-19 | 68 |
future brain | 8.87e-19 | 68 |
telencephalon | 5.18e-16 | 34 |
brain grey matter | 5.85e-16 | 34 |
gray matter | 5.85e-16 | 34 |
regional part of telencephalon | 4.57e-15 | 32 |
cerebral hemisphere | 7.13e-15 | 32 |
neurectoderm | 8.21e-15 | 86 |
neural plate | 3.00e-14 | 82 |
presumptive neural plate | 3.00e-14 | 82 |
regional part of cerebral cortex | 5.81e-12 | 22 |
pre-chordal neural plate | 6.66e-12 | 61 |
cerebral cortex | 4.05e-11 | 25 |
pallium | 4.05e-11 | 25 |
neocortex | 5.40e-11 | 20 |
ectoderm-derived structure | 5.05e-10 | 171 |
ectoderm | 5.05e-10 | 171 |
presumptive ectoderm | 5.05e-10 | 171 |
ecto-epithelium | 3.83e-09 | 104 |
organ system subdivision | 3.32e-07 | 223 |