FFCP PHASE1:Hg19::chr2:17603323..17603339,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:17603323..17603339,- | |||
|description=CAGE_peak_at_chr2:17603323..17603339,- | |description=CAGE_peak_at_chr2:17603323..17603339,- | ||
|id=chr2:17603323..17603339,- | |id=chr2:17603323..17603339,- | ||
|ontology_enrichment_celltype=CL:0000359!1.43e-29!32;CL:0000192!1.37e-21!42;CL:0000514!1.37e-21!42;CL:0000680!3.03e-21!57;CL:0000056!3.03e-21!57;CL:0000355!3.03e-21!57;CL:0000187!2.96e-20!54;CL:0000393!6.37e-20!60;CL:0000211!6.37e-20!60;CL:0000183!3.65e-18!59;CL:0002539!1.27e-14!10;CL:0000055!1.12e-12!180;CL:0002594!2.44e-10!4;CL:0002589!2.63e-09!2;CL:0000222!7.38e-09!119 | |ontology_enrichment_celltype=CL:0000359!1.43e-29!32;CL:0000192!1.37e-21!42;CL:0000514!1.37e-21!42;CL:0000680!3.03e-21!57;CL:0000056!3.03e-21!57;CL:0000355!3.03e-21!57;CL:0000187!2.96e-20!54;CL:0000393!6.37e-20!60;CL:0000211!6.37e-20!60;CL:0000183!3.65e-18!59;CL:0002539!1.27e-14!10;CL:0000055!1.12e-12!180;CL:0002594!2.44e-10!4;CL:0002589!2.63e-09!2;CL:0000222!7.38e-09!119 | ||
|ontology_enrichment_celltype_v019=CL:0002594;1.10e-25;4!CL:0000359;5.37e-25;32!CL:0002539;6.49e-18;10!CL:0000192;2.71e-13;43!CL:0000319;1.32e-12;1!CL:0000187;1.30e-07;55!CL:0000159;6.24e-07;2!CL:0002589;8.52e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,8.21e-27,32;CL:0002594,1.10e-25,4;CL:0000192,1.08e-19,43;CL:0000514,1.08e-19,43;CL:0002539,5.57e-18,10;CL:0000187,3.65e-15,55;CL:0000680,2.53e-14,58;CL:0000056,2.53e-14,58;CL:0000355,2.53e-14,58;CL:0000393,1.45e-13,61;CL:0000211,1.45e-13,61;CL:0000319,1.25e-12,1;CL:0000159,6.07e-07,2;CL:0002589,8.06e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000514;2.71e-13;43!UBERON:0007123;6.22e-10;5!CL:0000355;5.83e-07;58 | |||
|ontology_enrichment_disease=DOID:2394!5.82e-10!14 | |ontology_enrichment_disease=DOID:2394!5.82e-10!14 | ||
|ontology_enrichment_disease_v019=DOID:3030;1.32e-12;1!DOID:2394;9.68e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,1.25e-12,1;DOID:2394,1.04e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0001637!1.86e-24!42;UBERON:0003509!1.86e-24!42;UBERON:0004572!1.86e-24!42;UBERON:0004573!2.93e-21!33;UBERON:0004571!2.93e-21!33;UBERON:0001134!1.52e-19!61;UBERON:0002036!1.52e-19!61;UBERON:0003082!1.52e-19!61;UBERON:0002385!8.94e-19!63;UBERON:0001015!8.94e-19!63;UBERON:0000383!8.94e-19!63;UBERON:0004290!1.97e-16!70;UBERON:0001981!7.24e-16!60;UBERON:0007500!7.24e-16!60;UBERON:0004537!7.24e-16!60;UBERON:0006965!7.24e-16!60;UBERON:0000914!1.09e-14!83;UBERON:0002329!1.09e-14!83;UBERON:0003077!1.09e-14!83;UBERON:0003059!1.09e-14!83;UBERON:0007282!1.09e-14!83;UBERON:0009618!1.09e-14!83;UBERON:0007285!1.09e-14!83;UBERON:0004237!1.27e-14!10;UBERON:0004695!1.27e-14!10;UBERON:0002111!1.27e-14!10;UBERON:0004178!1.27e-14!10;UBERON:0000486!2.34e-13!82;UBERON:0000055!2.90e-13!69;UBERON:0004872!4.98e-13!84;UBERON:0002049!1.66e-12!79;UBERON:0007798!1.66e-12!79;UBERON:0001310!2.44e-10!4;UBERON:0004535!5.44e-10!110;UBERON:0002119!7.10e-10!4;UBERON:0004531!7.10e-10!4;UBERON:0001009!1.33e-09!113;UBERON:0001135!1.62e-09!15;UBERON:0001529!2.63e-09!2;UBERON:0007204!2.63e-09!2;UBERON:0000490!5.75e-09!138;UBERON:0000947!9.31e-09!21;UBERON:0010191!9.31e-09!21;UBERON:0003914!5.20e-08!118;UBERON:0000992!1.08e-07!13 | |ontology_enrichment_uberon=UBERON:0001637!1.86e-24!42;UBERON:0003509!1.86e-24!42;UBERON:0004572!1.86e-24!42;UBERON:0004573!2.93e-21!33;UBERON:0004571!2.93e-21!33;UBERON:0001134!1.52e-19!61;UBERON:0002036!1.52e-19!61;UBERON:0003082!1.52e-19!61;UBERON:0002385!8.94e-19!63;UBERON:0001015!8.94e-19!63;UBERON:0000383!8.94e-19!63;UBERON:0004290!1.97e-16!70;UBERON:0001981!7.24e-16!60;UBERON:0007500!7.24e-16!60;UBERON:0004537!7.24e-16!60;UBERON:0006965!7.24e-16!60;UBERON:0000914!1.09e-14!83;UBERON:0002329!1.09e-14!83;UBERON:0003077!1.09e-14!83;UBERON:0003059!1.09e-14!83;UBERON:0007282!1.09e-14!83;UBERON:0009618!1.09e-14!83;UBERON:0007285!1.09e-14!83;UBERON:0004237!1.27e-14!10;UBERON:0004695!1.27e-14!10;UBERON:0002111!1.27e-14!10;UBERON:0004178!1.27e-14!10;UBERON:0000486!2.34e-13!82;UBERON:0000055!2.90e-13!69;UBERON:0004872!4.98e-13!84;UBERON:0002049!1.66e-12!79;UBERON:0007798!1.66e-12!79;UBERON:0001310!2.44e-10!4;UBERON:0004535!5.44e-10!110;UBERON:0002119!7.10e-10!4;UBERON:0004531!7.10e-10!4;UBERON:0001009!1.33e-09!113;UBERON:0001135!1.62e-09!15;UBERON:0001529!2.63e-09!2;UBERON:0007204!2.63e-09!2;UBERON:0000490!5.75e-09!138;UBERON:0000947!9.31e-09!21;UBERON:0010191!9.31e-09!21;UBERON:0003914!5.20e-08!118;UBERON:0000992!1.08e-07!13 | ||
|ontology_enrichment_uberon_v019=UBERON:0001310;1.10e-25;4!UBERON:0004237;6.49e-18;10!UBERON:0004695;6.49e-18;10!UBERON:0002111;6.49e-18;10!UBERON:0004178;6.49e-18;10!UBERON:0001637;3.22e-13;42!UBERON:0003509;3.22e-13;42!UBERON:0004572;3.22e-13;42!UBERON:0007195;1.32e-12;1!UBERON:0004573;3.86e-12;33!UBERON:0004571;3.86e-12;33!UBERON:0001135;4.92e-12;15!UBERON:0002119;6.03e-12;4!UBERON:0010260;9.09e-12;9!UBERON:0002046;6.22e-10;5!UBERON:0000947;1.17e-08;21!UBERON:0010191;1.17e-08;21!UBERON:0000992;2.68e-08;13!UBERON:0003914;8.46e-07;74!UBERON:0001529;8.52e-07;2!UBERON:0007204;8.52e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001310,1.10e-25,4;UBERON:0001637,3.47e-20,42;UBERON:0003509,3.47e-20,42;UBERON:0004572,3.47e-20,42;UBERON:0004237,5.57e-18,10;UBERON:0004695,5.57e-18,10;UBERON:0002111,5.57e-18,10;UBERON:0004178,5.57e-18,10;UBERON:0007500,4.62e-14,59;UBERON:0001981,4.62e-14,59;UBERON:0004537,4.62e-14,59;UBERON:0006965,4.62e-14,59;UBERON:0001134,2.50e-13,62;UBERON:0002036,2.50e-13,62;UBERON:0003082,2.50e-13,62;UBERON:0002385,7.06e-13,64;UBERON:0001015,7.06e-13,64;UBERON:0000383,7.06e-13,64;UBERON:0007195,1.11e-12,1;UBERON:0001135,4.45e-12,15;UBERON:0000055,4.70e-12,68;UBERON:0002119,7.12e-12,4;UBERON:0010260,9.09e-12,9;UBERON:0004573,1.16e-11,33;UBERON:0004571,1.16e-11,33;UBERON:0002329,1.69e-11,71;UBERON:0003059,1.69e-11,71;UBERON:0007282,1.69e-11,71;UBERON:0004290,1.69e-11,71;UBERON:0009618,1.69e-11,71;UBERON:0003077,2.53e-11,72;UBERON:0007285,2.53e-11,72;UBERON:0007524,3.75e-11,73;UBERON:0002049,2.30e-10,78;UBERON:0007503,2.30e-10,78;UBERON:0007798,2.30e-10,78;UBERON:0002046,7.11e-10,5;UBERON:0004117,7.11e-10,5;UBERON:0007689,7.11e-10,5;UBERON:0007123,7.11e-10,5;UBERON:0003091,7.11e-10,5;UBERON:0000486,1.13e-09,83;UBERON:0004872,1.13e-09,83;UBERON:0000947,1.09e-08,21;UBERON:0010191,1.09e-08,21;UBERON:0000992,2.89e-08,13;UBERON:0000490,1.62e-07,148;UBERON:0004535,4.31e-07,109;UBERON:0001009,7.18e-07,112;UBERON:0001529,8.06e-07,2;UBERON:0007204,8.06e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6893005858071,3.01347264011988,2.92124036154949,2.92759679274304,0,0.408001382488506,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.12269149171914,0,0,0,0,0,0,1.20378439891088,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0.0890320356467374,0,0,0.255225424989168,0,0,0,0.6970372701606,0,0.532306030317022,0,2.7798632865588,0.572499546967965,0,0,0,0,0,0,0.78494864019923,0,0,0,0.606547444719948,0,0.842516912477962,0,1.94970791705028,0,0,0,0,0,0,0.438450885253763,0,0,4.66693867014219,1.54911749049875,0,0,0,5.7067368237,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.01067007123692,0,0,0,0,0,3.06806047506464,0,0.311039587661807,0,0,0,0,0,3.33410970433911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34823682632161,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0.318593534327405,2.24901556081802,2.63947026689641,0,0,0.521745061811734,0,0,0,0.181848659202559,0,0,7.16572599657509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,3.19504781379835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01837352645104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6893005858071,3.01347264011988,2.92124036154949,2.92759679274304,0,0.408001382488506,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.12269149171914,0,0,0,0,0,0,1.20378439891088,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0.0890320356467374,0,0,0.255225424989168,0,0,0,0.6970372701606,0,0.532306030317022,0,2.7798632865588,0.572499546967965,0,0,0,0,0,0,0.78494864019923,0,0,0,0.606547444719948,0,0.842516912477962,0,1.94970791705028,0,0,0,0,0,0,0.438450885253763,0,0,4.66693867014219,1.54911749049875,0,0,0,5.7067368237,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.01067007123692,0,0,0,0,0,3.06806047506464,0,0.311039587661807,0,0,0,0,0,3.33410970433911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34823682632161,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0.318593534327405,2.24901556081802,2.63947026689641,0,0,0.521745061811734,0,0,0,0.181848659202559,0,0,7.16572599657509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,3.19504781379835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01837352645104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr2:17603323..17603339,- | |short_description=p@chr2:17603323..17603339,- | ||
}} | }} |
Latest revision as of 02:43, 29 July 2015
Short description: | p@chr2:17603323..17603339, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:17603323..17603339, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 8.21e-27 | 32 |
smooth muscle cell of the umbilical artery | 1.10e-25 | 4 |
smooth muscle cell | 1.08e-19 | 43 |
smooth muscle myoblast | 1.08e-19 | 43 |
aortic smooth muscle cell | 5.57e-18 | 10 |
muscle cell | 3.65e-15 | 55 |
muscle precursor cell | 2.53e-14 | 58 |
myoblast | 2.53e-14 | 58 |
multi-potent skeletal muscle stem cell | 2.53e-14 | 58 |
electrically responsive cell | 1.45e-13 | 61 |
electrically active cell | 1.45e-13 | 61 |
mucus secreting cell | 1.25e-12 | 1 |
seromucus secreting cell | 6.07e-07 | 2 |
smooth muscle cell of the brachiocephalic vasculature | 8.06e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 1.25e-12 | 1 |
ovarian cancer | 1.04e-07 | 14 |