FFCP PHASE1:Hg19::chr14:90085458..90085557,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr14:90085458..90085557,-
|short_description=p1@FOXN3
|description=CAGE_peak_1_at_FOXN3_5end
|association_with_transcript=0bp_to_ENST00000345097,ENST0000055535...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1112 | |EntrezGene=1112 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1928 | |HGNC=1928 | ||
|TSSclassifier=strong | |||
|UniProt=G3V3A7,O00409 | |UniProt=G3V3A7,O00409 | ||
|association_with_transcript=0bp_to_ENST00000345097,ENST00000555353,ENST00000555855,NM_001085471,uc001xxo.3,uc001xxp.2,uc010atk.2_5end | |||
|cluster_id=chr14:90085458..90085557,- | |||
|description=CAGE_peak_1_at_FOXN3_5end | |||
|id=chr14:90085458..90085557,- | |||
|ontology_enrichment_celltype=CL:0000738!3.26e-19!140;CL:0000037!1.58e-15!172;CL:0000566!1.58e-15!172;CL:0000988!2.44e-14!182;CL:0002031!7.09e-14!124;CL:0002087!1.06e-13!119;CL:0002032!2.61e-13!165;CL:0000837!2.61e-13!165;CL:0000791!1.75e-11!18;CL:0000789!1.75e-11!18;CL:0002420!1.75e-11!18;CL:0002419!1.75e-11!18;CL:0000790!1.75e-11!18;CL:0000838!1.32e-08!52;CL:0000766!2.05e-08!76;CL:0000542!2.25e-08!53;CL:0000051!2.25e-08!53;CL:0000084!3.06e-08!25;CL:0000827!3.06e-08!25;CL:0000625!5.94e-08!11;CL:0000557!8.44e-08!71 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.61e-11;18!CL:0000789;1.61e-11;18!CL:0002419;1.61e-11;18!CL:0000084;2.51e-08;25!CL:0000625;5.85e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,5.28e-21,136;CL:0000037,5.11e-17,168;CL:0000988,8.32e-16,177;CL:0002031,2.03e-15,120;CL:0002087,2.77e-15,115;CL:0002032,1.08e-14,161;CL:0000837,1.08e-14,161;CL:0000791,1.73e-11,18;CL:0000789,1.73e-11,18;CL:0002420,1.73e-11,18;CL:0002419,1.73e-11,18;CL:0000790,1.73e-11,18;CL:0000766,7.27e-10,72;CL:0000557,3.08e-09,67;CL:0000838,1.14e-08,52;CL:0000542,1.96e-08,53;CL:0000051,1.96e-08,53;CL:0000084,2.76e-08,25;CL:0000827,2.76e-08,25;CL:0000625,5.89e-08,11;CL:0000763,2.51e-07,108;CL:0000049,2.51e-07,108;CL:0002009,4.33e-07,61;CL:0000839,4.99e-07,66;CL:0000473,8.41e-07,48;CL:0000234,8.41e-07,48 | |||
|ontology_enrichment_development_v019=CL:0000790;1.61e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.46e-21!115;UBERON:0002390!3.56e-11!102;UBERON:0003061!3.56e-11!102;UBERON:0002193!1.98e-10!112;UBERON:0001049!9.10e-10!57;UBERON:0005068!9.10e-10!57;UBERON:0006241!9.10e-10!57;UBERON:0007135!9.10e-10!57;UBERON:0002616!3.07e-09!59;UBERON:0001017!1.83e-08!82;UBERON:0005743!1.20e-07!86;UBERON:0000955!2.68e-07!69;UBERON:0006238!2.68e-07!69;UBERON:0000073!3.51e-07!94;UBERON:0001016!3.51e-07!94;UBERON:0003080!5.44e-07!42;UBERON:0002405!6.15e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.69e-21,114;UBERON:0002390,1.22e-12,98;UBERON:0003061,1.22e-12,98;UBERON:0002193,9.57e-12,108;UBERON:0001049,2.16e-09,56;UBERON:0005068,2.16e-09,56;UBERON:0006241,2.16e-09,56;UBERON:0007135,2.16e-09,56;UBERON:0002405,1.15e-08,93;UBERON:0000073,1.58e-08,53;UBERON:0002616,1.58e-08,53;UBERON:0001017,4.36e-08,81;UBERON:0002371,6.41e-08,76;UBERON:0001016,1.50e-07,89;UBERON:0001474,3.89e-07,82;UBERON:0000955,6.29e-07,68;UBERON:0006238,6.29e-07,68 | |||
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| ||
|short_description=p1@FOXN3 | |||
}} | }} |
Latest revision as of 11:36, 16 September 2015
Short description: | p1@FOXN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_FOXN3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000345097, ENST00000555353, ENST00000555855, NM_001085471, uc001xxo.3, uc001xxp.2, uc010atk.2_5end |
EntrezGene: | FOXN3 |
HGNC: | 1928 |
UniProt: | G3V3A7O00409 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 5.28e-21 | 136 |
hematopoietic stem cell | 5.11e-17 | 168 |
hematopoietic cell | 8.32e-16 | 177 |
hematopoietic lineage restricted progenitor cell | 2.03e-15 | 120 |
nongranular leukocyte | 2.77e-15 | 115 |
hematopoietic oligopotent progenitor cell | 1.08e-14 | 161 |
hematopoietic multipotent progenitor cell | 1.08e-14 | 161 |
mature alpha-beta T cell | 1.73e-11 | 18 |
alpha-beta T cell | 1.73e-11 | 18 |
immature T cell | 1.73e-11 | 18 |
mature T cell | 1.73e-11 | 18 |
immature alpha-beta T cell | 1.73e-11 | 18 |
myeloid leukocyte | 7.27e-10 | 72 |
granulocyte monocyte progenitor cell | 3.08e-09 | 67 |
lymphoid lineage restricted progenitor cell | 1.14e-08 | 52 |
lymphocyte | 1.96e-08 | 53 |
common lymphoid progenitor | 1.96e-08 | 53 |
T cell | 2.76e-08 | 25 |
pro-T cell | 2.76e-08 | 25 |
CD8-positive, alpha-beta T cell | 5.89e-08 | 11 |
myeloid cell | 2.51e-07 | 108 |
common myeloid progenitor | 2.51e-07 | 108 |
macrophage dendritic cell progenitor | 4.33e-07 | 61 |
myeloid lineage restricted progenitor cell | 4.99e-07 | 66 |
defensive cell | 8.41e-07 | 48 |
phagocyte | 8.41e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
adult organism | 6.69e-21 | 114 |
hematopoietic system | 1.22e-12 | 98 |
blood island | 1.22e-12 | 98 |
hemolymphoid system | 9.57e-12 | 108 |
neural tube | 2.16e-09 | 56 |
neural rod | 2.16e-09 | 56 |
future spinal cord | 2.16e-09 | 56 |
neural keel | 2.16e-09 | 56 |
immune system | 1.15e-08 | 93 |
regional part of nervous system | 1.58e-08 | 53 |
regional part of brain | 1.58e-08 | 53 |
central nervous system | 4.36e-08 | 81 |
bone marrow | 6.41e-08 | 76 |
nervous system | 1.50e-07 | 89 |
bone element | 3.89e-07 | 82 |
brain | 6.29e-07 | 68 |
future brain | 6.29e-07 | 68 |