FFCP PHASE1:Hg19::chr6:152639541..152639577,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23345 | |EntrezGene=23345 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17089 | |HGNC=17089 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-62bp_to_ENST00000356820,ENST00000367256,uc003qos.3,uc010kiv.2_5end | |association_with_transcript=-62bp_to_ENST00000356820,ENST00000367256,uc003qos.3,uc010kiv.2_5end | ||
|cluster_id=chr6:152639541..152639577,- | |||
|description=CAGE_peak_16_at_SYNE1_5end | |description=CAGE_peak_16_at_SYNE1_5end | ||
|id=chr6:152639541..152639577,- | |id=chr6:152639541..152639577,- | ||
|ontology_enrichment_celltype=CL:0002139!3.60e-13!24;CL:0000213!6.68e-10!57;CL:0000215!6.68e-10!57;CL:0000071!1.99e-08!18;CL:0002546!1.99e-08!18;CL:0000222!1.17e-07!119;CL:0000115!1.87e-07!35;CL:0005020!9.84e-07!6;CL:0002138!9.84e-07!6;CL:0005022!9.84e-07!6 | |ontology_enrichment_celltype=CL:0002139!3.60e-13!24;CL:0000213!6.68e-10!57;CL:0000215!6.68e-10!57;CL:0000071!1.99e-08!18;CL:0002546!1.99e-08!18;CL:0000222!1.17e-07!119;CL:0000115!1.87e-07!35;CL:0005020!9.84e-07!6;CL:0002138!9.84e-07!6;CL:0005022!9.84e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002138;9.09e-13;6!CL:0002139;4.25e-11;24!CL:0000077;5.96e-11;19!CL:0000213;1.83e-09;58!CL:0000215;1.83e-09;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000213,2.23e-14,58;CL:0000215,2.23e-14,58;CL:0005020,6.86e-13,6;CL:0002138,6.86e-13,6;CL:0005022,6.86e-13,6;CL:0002139,3.81e-11,24;CL:0000077,8.06e-11,19;CL:0000222,5.20e-07,121;CL:0000115,5.31e-07,36 | |||
|ontology_enrichment_development_v019=CL:0005022;9.09e-13;6!UBERON:0005062;3.06e-11;4!UBERON:0007284;3.06e-11;4!UBERON:0004872;8.86e-07;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!4.39e-15!84;UBERON:0001009!1.68e-13!113;UBERON:0000055!2.11e-13!69;UBERON:0002049!7.98e-13!79;UBERON:0007798!7.98e-13!79;UBERON:0004535!1.26e-11!110;UBERON:0001981!9.58e-11!60;UBERON:0007500!9.58e-11!60;UBERON:0004537!9.58e-11!60;UBERON:0006965!9.58e-11!60;UBERON:0001986!1.99e-08!18;UBERON:0004638!1.99e-08!18;UBERON:0004852!1.99e-08!18;UBERON:0007100!5.99e-08!27;UBERON:0000487!1.04e-07!22;UBERON:0006914!1.69e-07!25;UBERON:0003914!4.76e-07!118;UBERON:0007023!8.48e-07!115 | |ontology_enrichment_uberon=UBERON:0004872!4.39e-15!84;UBERON:0001009!1.68e-13!113;UBERON:0000055!2.11e-13!69;UBERON:0002049!7.98e-13!79;UBERON:0007798!7.98e-13!79;UBERON:0004535!1.26e-11!110;UBERON:0001981!9.58e-11!60;UBERON:0007500!9.58e-11!60;UBERON:0004537!9.58e-11!60;UBERON:0006965!9.58e-11!60;UBERON:0001986!1.99e-08!18;UBERON:0004638!1.99e-08!18;UBERON:0004852!1.99e-08!18;UBERON:0007100!5.99e-08!27;UBERON:0000487!1.04e-07!22;UBERON:0006914!1.69e-07!25;UBERON:0003914!4.76e-07!118;UBERON:0007023!8.48e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0003978;7.83e-15;3!UBERON:0000946;7.83e-15;3!UBERON:0002133;7.86e-11;2!UBERON:0001473;1.37e-09;8!UBERON:0004536;1.37e-09;8!UBERON:0006558;1.37e-09;8!UBERON:0002465;1.12e-07;10!UBERON:0002106;1.50e-07;3!UBERON:0004151;3.92e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003978,4.96e-15,3;UBERON:0009751,4.96e-15,3;UBERON:0000946,4.96e-15,3;UBERON:0002523,4.96e-15,3;UBERON:0005983,4.96e-15,3;UBERON:0002165,4.96e-15,3;UBERON:0002062,4.96e-15,3;UBERON:0007280,4.96e-15,3;UBERON:0002133,7.90e-11,2;UBERON:0001473,1.11e-09,8;UBERON:0004536,1.11e-09,8;UBERON:0006558,1.11e-09,8;UBERON:0002465,9.52e-08,10;UBERON:0002106,1.51e-07,3;UBERON:0004854,1.51e-07,3;UBERON:0009034,1.51e-07,3;UBERON:0002095,1.51e-07,3;UBERON:0004782,1.51e-07,3;UBERON:0003281,1.51e-07,3;UBERON:0009664,1.51e-07,3;UBERON:0002296,1.51e-07,3;UBERON:0005602,1.51e-07,3;UBERON:0001179,1.51e-07,3;UBERON:0006293,1.51e-07,3;UBERON:0004151,2.56e-07,3;UBERON:0000055,2.67e-07,68 | |||
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| ||
|short_description=p16@SYNE1 | |short_description=p16@SYNE1 | ||
}} | }} |
Latest revision as of 06:40, 16 September 2015
Short description: | p16@SYNE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_SYNE1_5end |
Coexpression cluster: | NA |
Association with transcript: | -62bp_to_ENST00000356820, ENST00000367256, uc003qos.3, uc010kiv.2_5end |
EntrezGene: | SYNE1 |
HGNC: | 17089 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lining cell | 2.23e-14 | 58 |
barrier cell | 2.23e-14 | 58 |
lymphangioblast | 6.86e-13 | 6 |
endothelial cell of lymphatic vessel | 6.86e-13 | 6 |
vascular lymphangioblast | 6.86e-13 | 6 |
endothelial cell of vascular tree | 3.81e-11 | 24 |
mesothelial cell | 8.06e-11 | 19 |
mesodermal cell | 5.20e-07 | 121 |
endothelial cell | 5.31e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
valve | 4.96e-15 | 3 |
cardiac mesenchyme | 4.96e-15 | 3 |
cardial valve | 4.96e-15 | 3 |
tunica intima | 4.96e-15 | 3 |
heart layer | 4.96e-15 | 3 |
endocardium | 4.96e-15 | 3 |
endocardial cushion | 4.96e-15 | 3 |
presumptive endocardium | 4.96e-15 | 3 |
atrioventricular valve | 7.90e-11 | 2 |
lymphatic vessel | 1.11e-09 | 8 |
lymph vasculature | 1.11e-09 | 8 |
lymphatic part of lymphoid system | 1.11e-09 | 8 |
lymphoid system | 9.52e-08 | 10 |
spleen | 1.51e-07 | 3 |
gastrointestinal system mesentery | 1.51e-07 | 3 |
stomach region | 1.51e-07 | 3 |
mesentery | 1.51e-07 | 3 |
gastrointestinal system serosa | 1.51e-07 | 3 |
mesentery of stomach | 1.51e-07 | 3 |
gut mesentery | 1.51e-07 | 3 |
dorsal mesentery | 1.51e-07 | 3 |
dorsal mesogastrium | 1.51e-07 | 3 |
peritoneal cavity | 1.51e-07 | 3 |
spleen primordium | 1.51e-07 | 3 |
cardiac chamber | 2.56e-07 | 3 |
vessel | 2.67e-07 | 68 |