FFCP PHASE1:Hg19::chr7:80373881..80373892,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10512 | |EntrezGene=10512 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=10725 | |HGNC=10725 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-361bp_to_D32000_5end | |association_with_transcript=-361bp_to_D32000_5end | ||
|cluster_id=chr7:80373881..80373892,- | |||
|coexpression_cluster_id=C1283 | |||
|description=CAGE_peak_19_at_SEMA3C_5end | |description=CAGE_peak_19_at_SEMA3C_5end | ||
|id=chr7:80373881..80373892,- | |id=chr7:80373881..80373892,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000214;1.87e-23;3!CL:0000135;2.35e-23;3!CL:0000388;2.35e-23;3!CL:0000511;9.48e-18;1!CL:0002625;9.48e-18;1!CL:0000216;9.48e-18;1!CL:0002616;9.48e-18;1!CL:0000153;2.33e-17;9!CL:0000447;2.33e-17;9!CL:0000499;5.07e-15;28!CL:0000327;1.13e-10;15!CL:0002615;8.86e-07;3!CL:0000346;8.86e-07;3!CL:1000428;8.86e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000214,1.68e-23,3;CL:0000135,2.63e-23,3;CL:0000388,2.63e-23,3;CL:0002616,5.26e-18,1;CL:0000511,7.37e-18,1;CL:0002625,7.37e-18,1;CL:0000216,7.37e-18,1;CL:0000153,2.54e-17,9;CL:0000447,2.54e-17,9;CL:0000499,5.45e-15,28;CL:0000327,1.19e-10,15;CL:0000151,1.03e-07,36;CL:0000346,8.62e-07,3;CL:1000428,8.62e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!9.90e-11!14;DOID:120!3.37e-07!27 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002118!1.57e-07!5;UBERON:0004532!1.57e-07!5;UBERON:0000992!2.52e-07!13 | |ontology_enrichment_uberon=UBERON:0002118!1.57e-07!5;UBERON:0004532!1.57e-07!5;UBERON:0000992!2.52e-07!13 | ||
|ontology_enrichment_uberon_v019=UBERON:0006915;1.87e-23;3!UBERON:0007616;1.87e-23;3!UBERON:0002217;1.87e-23;3!UBERON:0002018;1.87e-23;3!UBERON:0007846;2.35e-23;3!UBERON:0000043;2.35e-23;3!UBERON:0007845;2.35e-23;3!UBERON:0001136;9.48e-18;1!UBERON:0001343;9.48e-18;1!UBERON:0004910;9.48e-18;1!UBERON:0004813;9.48e-18;1!UBERON:0004457;2.33e-17;9!UBERON:0000042;2.33e-17;9!UBERON:0004909;1.51e-09;2!UBERON:0005406;1.51e-09;2!UBERON:0004905;2.07e-09;8!UBERON:0000982;2.07e-09;8!UBERON:0004770;2.07e-09;8!UBERON:0000412;8.86e-07;3!UBERON:0001992;8.86e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006915,1.68e-23,3;UBERON:0007616,1.68e-23,3;UBERON:0002217,1.68e-23,3;UBERON:0002018,1.68e-23,3;UBERON:0007846,2.63e-23,3;UBERON:0000043,2.63e-23,3;UBERON:0007845,2.63e-23,3;UBERON:0001136,7.37e-18,1;UBERON:0001343,7.37e-18,1;UBERON:0004910,7.37e-18,1;UBERON:0005154,7.37e-18,1;UBERON:0005295,7.37e-18,1;UBERON:0004813,7.37e-18,1;UBERON:0005297,7.37e-18,1;UBERON:0005294,7.37e-18,1;UBERON:0010141,7.37e-18,1;UBERON:0005891,7.37e-18,1;UBERON:0004457,3.85e-13,12;UBERON:0000042,3.85e-13,12;UBERON:0005406,1.12e-09,2;UBERON:0004909,1.33e-09,2;UBERON:0004905,1.99e-09,8;UBERON:0000982,1.99e-09,8;UBERON:0004770,1.99e-09,8;UBERON:0000412,8.62e-07,3;UBERON:0001992,8.62e-07,3 | |||
|phase1_expression=0.363356758541113,0.642301571672949,0,1.0007329835313,0,1.74467704820074,0,0.631719873426831,0.261185628199839,0,0,0,0,0,0.331397375727916,0,0,0,0.487932798790507,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0,0.56738522469114,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01392563272577,0,0,0.0945348171640679,0.221729397462564,0.527008714158756,0,0,0,0,0.348259474598534,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,1.72101972449288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0.179389635688862,0,0,1.20036438433761,0.206105058476878,0,0.37223371266318,0,0,0.252433774244115,0,0.161646056818812,0,0.10075209822764,0,0,0,0,0.121973706129595,0,0,0.10366105501537,0,0,0,1.28648187638577,0,0,0,0,0.168584690078102,0,0.220587945464788,0.217879444092406,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0.100528972411631,0.370353780634118,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0.335964256397719,0.283550194484773,0.268675568108545,0,0.766765358330422,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599837947092342,0,0,0,0,0,0,0.144781306667579,0,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,0.12269149171914,0,0,0.207970861530807,0.178428988797162,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306923946576125,0.841980283299221,0.128139149255701,0,0.64341568457443,0,0.154209693802656,0,0,0,0,0,0.40101294060657,0.0920809889358963,0.114814448164607,0.364182336013434,0.131124414959424,0,0.0770153371044148,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0.325378394664303,0,0,0,0,0,1.6068392984416,0,0.154048617114644,0,0,0,0,0.170453254832202,0.0890320356467374,0.826424576804891,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0.731140468893853,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0.354761064070598,2.9555068941673,6.25660296623814,0,0,0,0,0,0,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.693373365065693,0.173559738335131,0,0,0,0.687944129886466,0,0,0,0,0,0,0.137041924646751,0.19871461170299,0,0.195551382734803,0,0.213452994739353,0.19980960958213,0.144090417154106,0,0,0,0,0,0.407712618220842,0.209205692624666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226624183040251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0.447764408660622,0.233713309847224,0,0.189403005275089,0.251567901752575,0,0,0.453692771289717,0.310874401165561,0.147855149989634,0.159296767163702,0,0.155262956876259,0.414706207840855,0.53168342911599,1.04349012362347,0.450772826991655,0,0.406870733204662,0.181848659202559,0.429642228169954,0.464033759878494,0.398095888698616,0,0,0,0,0,0.214441591374926,0,0.680117776536817,0,0.489473409012935,0.71635536432595,0.308801447160972,0.657852148736121,0,0.771656153083659,0.337884881306145,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0.184105950251841,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0.381382095467167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.766574565837572,0,0,0,0,0,0,0.171488009437418,0,0,0.118193840883968,0,0,0.157115589916002,0,0,0.215927591218621,0.47775168788705,0,0,0,0,0,0,0.51215543128185,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219881033490858,0,0,0.218559560503957,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0.0802413666891683,0,0,0,0.157771562193185,0,0,0,2.23197010900051,2.31087814315709,0.865253124247578,0.252332849670158,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0.33639558774184,0,0,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0.363356758541113,0.642301571672949,0,1.0007329835313,0,1.74467704820074,0,0.631719873426831,0.261185628199839,0,0,0,0,0,0.331397375727916,0,0,0,0.487932798790507,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0,0.56738522469114,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01392563272577,0,0,0.0945348171640679,0.221729397462564,0.527008714158756,0,0,0,0,0.348259474598534,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,1.72101972449288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0.179389635688862,0,0,1.20036438433761,0.206105058476878,0,0.37223371266318,0,0,0.252433774244115,0,0.161646056818812,0,0.10075209822764,0,0,0,0,0.121973706129595,0,0,0.10366105501537,0,0,0,1.28648187638577,0,0,0,0,0.168584690078102,0,0.220587945464788,0.217879444092406,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0.100528972411631,0.370353780634118,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0.335964256397719,0.283550194484773,0.268675568108545,0,0.766765358330422,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599837947092342,0,0,0,0,0,0,0.144781306667579,0,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,0.12269149171914,0,0,0.207970861530807,0.178428988797162,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306923946576125,0.841980283299221,0.128139149255701,0,0.64341568457443,0,0.154209693802656,0,0,0,0,0,0.40101294060657,0.0920809889358963,0.114814448164607,0.364182336013434,0.131124414959424,0,0.0770153371044148,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0.325378394664303,0,0,0,0,0,1.6068392984416,0,0.154048617114644,0,0,0,0,0.170453254832202,0.0890320356467374,0.826424576804891,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0.731140468893853,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0.354761064070598,2.9555068941673,6.25660296623814,0,0,0,0,0,0,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.693373365065693,0.173559738335131,0,0,0,0.687944129886466,0,0,0,0,0,0,0.137041924646751,0.19871461170299,0,0.195551382734803,0,0.213452994739353,0.19980960958213,0.144090417154106,0,0,0,0,0,0.407712618220842,0.209205692624666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226624183040251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0.447764408660622,0.233713309847224,0,0.189403005275089,0.251567901752575,0,0,0.453692771289717,0.310874401165561,0.147855149989634,0.159296767163702,0,0.155262956876259,0.414706207840855,0.53168342911599,1.04349012362347,0.450772826991655,0,0.406870733204662,0.181848659202559,0.429642228169954,0.464033759878494,0.398095888698616,0,0,0,0,0,0.214441591374926,0,0.680117776536817,0,0.489473409012935,0.71635536432595,0.308801447160972,0.657852148736121,0,0.771656153083659,0.337884881306145,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0.184105950251841,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0.381382095467167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.766574565837572,0,0,0,0,0,0,0.171488009437418,0,0,0.118193840883968,0,0,0.157115589916002,0,0,0.215927591218621,0.47775168788705,0,0,0,0,0,0,0.51215543128185,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219881033490858,0,0,0.218559560503957,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0.0802413666891683,0,0,0,0.157771562193185,0,0,0,2.23197010900051,2.31087814315709,0.865253124247578,0.252332849670158,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0.33639558774184,0,0,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p19@SEMA3C | |short_description=p19@SEMA3C | ||
}} | }} |
Latest revision as of 17:17, 19 September 2015
Short description: | p19@SEMA3C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_SEMA3C_5end |
Coexpression cluster: | C1283_Synoviocyte_tenocyte_Fibroblast_Adipocyte_Ewing_Chondrocyte_Neurons |
Association with transcript: | -361bp_to_D32000_5end |
EntrezGene: | SEMA3C |
HGNC: | 10725 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
synovial cell | 1.68e-23 | 3 |
fibrocyte | 2.63e-23 | 3 |
tendon cell | 2.63e-23 | 3 |
perirenal adipocyte cell | 5.26e-18 | 1 |
androgen binding protein secreting cell | 7.37e-18 | 1 |
seminiferous tubule epithelial cell | 7.37e-18 | 1 |
Sertoli cell | 7.37e-18 | 1 |
GAG secreting cell | 2.54e-17 | 9 |
carbohydrate secreting cell | 2.54e-17 | 9 |
stromal cell | 5.45e-15 | 28 |
extracellular matrix secreting cell | 1.19e-10 | 15 |
secretory cell | 1.03e-07 | 36 |
hair follicle dermal papilla cell | 8.62e-07 | 3 |
stem cell of epidermis | 8.62e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
stratified squamous epithelium | 1.68e-23 | 3 |
layer of synovial tissue | 1.68e-23 | 3 |
synovial joint | 1.68e-23 | 3 |
synovial membrane of synovial joint | 1.68e-23 | 3 |
dense regular connective tissue | 2.63e-23 | 3 |
tendon | 2.63e-23 | 3 |
regular connective tissue | 2.63e-23 | 3 |
mesothelium | 7.37e-18 | 1 |
seminiferous tubule of testis | 7.37e-18 | 1 |
epithelium of male gonad | 7.37e-18 | 1 |
epithelial cord | 7.37e-18 | 1 |
sex cord | 7.37e-18 | 1 |
seminiferous tubule epithelium | 7.37e-18 | 1 |
testis sex cord | 7.37e-18 | 1 |
genital ridge | 7.37e-18 | 1 |
primitive sex cord of indifferent gonad | 7.37e-18 | 1 |
coelomic epithelium | 7.37e-18 | 1 |
cavity lining | 3.85e-13 | 12 |
serous membrane | 3.85e-13 | 12 |
perirenal fat | 1.12e-09 | 2 |
epithelium of gonad | 1.33e-09 | 2 |
articulation | 1.99e-09 | 8 |
skeletal joint | 1.99e-09 | 8 |
articular system | 1.99e-09 | 8 |
dermal papilla | 8.62e-07 | 3 |
papillary layer of dermis | 8.62e-07 | 3 |