FFCP PHASE1:Hg19::chr16:20912007..20912027,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr16:20912007..20912027,+
|short_description=p6@LYRM1
|description=CAGE_peak_6_at_LYRM1_5end
|association_with_transcript=-47bp_to_ENST00000219168,ENST00000412...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57149 | |EntrezGene=57149 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25074 | |HGNC=25074 | ||
|TSSclassifier=strong | |||
|UniProt=O43325 | |UniProt=O43325 | ||
|association_with_transcript=-47bp_to_ENST00000219168,ENST00000412082,NM_001128301,NM_001128302,uc002dia.3,uc010bwl.2,uc010bwm.2_5end | |||
|cluster_id=chr16:20912007..20912027,+ | |||
|coexpression_cluster_id=C3543 | |||
|description=CAGE_peak_6_at_LYRM1_5end | |||
|id=chr16:20912007..20912027,+ | |||
|ontology_enrichment_celltype=CL:0002139!7.43e-15!24;CL:0000222!1.42e-12!119;CL:0000213!4.75e-12!57;CL:0000215!4.75e-12!57;CL:0000115!1.92e-11!35;CL:0000071!4.13e-11!18;CL:0002546!4.13e-11!18;CL:0002078!1.62e-10!44;CL:0000136!9.30e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0002139;3.57e-22;24!CL:0000115;1.66e-16;36!CL:0000071;3.35e-16;18!CL:0002078;7.03e-12;45!CL:0000213;7.83e-11;58!CL:0000215;7.83e-11;58!CL:0000136;1.09e-10;13!CL:1000413;6.48e-08;9!CL:0002138;1.42e-07;6!CL:0002543;2.24e-07;6!CL:0002544;5.66e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.35e-22,24;CL:0000115,8.00e-20,36;CL:0000213,3.58e-18,58;CL:0000215,3.58e-18,58;CL:0002078,5.77e-17,45;CL:0000071,1.16e-16,18;CL:0002546,1.16e-16,18;CL:0000222,1.77e-13,121;CL:0000136,4.66e-10,15;CL:1000413,2.20e-08,9;CL:0005020,1.62e-07,6;CL:0002138,1.62e-07,6;CL:0005022,1.62e-07,6;CL:0002543,2.21e-07,6;CL:0002544,5.36e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;3.35e-16;18!CL:0005022;1.42e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!1.16e-14!659;UBERON:0000467!2.32e-12!625;UBERON:0000480!4.14e-12!626;UBERON:0001986!4.13e-11!18;UBERON:0004638!4.13e-11!18;UBERON:0004852!4.13e-11!18;UBERON:0000055!5.81e-11!69;UBERON:0002049!6.67e-11!79;UBERON:0007798!6.67e-11!79;UBERON:0006914!1.52e-10!25;UBERON:0000922!2.05e-10!612;UBERON:0004872!5.73e-10!84;UBERON:0002050!6.91e-10!605;UBERON:0005423!6.91e-10!605;UBERON:0001981!7.60e-10!60;UBERON:0007500!7.60e-10!60;UBERON:0004537!7.60e-10!60;UBERON:0006965!7.60e-10!60;UBERON:0000487!8.38e-10!22;UBERON:0001009!1.26e-09!113;UBERON:0000923!1.33e-09!604;UBERON:0005291!1.33e-09!604;UBERON:0006598!1.33e-09!604;UBERON:0002532!1.33e-09!604;UBERON:0004535!8.52e-09!110;UBERON:0000926!3.00e-08!448;UBERON:0004120!3.00e-08!448;UBERON:0006603!3.00e-08!448;UBERON:0003914!1.80e-07!118;UBERON:0000477!6.85e-07!286;UBERON:0000025!7.26e-07!194;UBERON:0000483!8.28e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;3.35e-16;18!UBERON:0001986;3.35e-16;18!UBERON:0004852;3.35e-16;18!UBERON:0006914;6.32e-14;25!UBERON:0000487;1.11e-13;22!UBERON:0000490;7.03e-09;33!UBERON:0003915;6.48e-08;9!UBERON:0004700;6.48e-08;9!UBERON:0001917;6.48e-08;9!UBERON:0000055;8.67e-08;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.16e-16,18;UBERON:0001986,1.16e-16,18;UBERON:0004852,1.16e-16,18;UBERON:0000055,4.89e-15,68;UBERON:0006914,3.70e-14,25;UBERON:0000487,4.77e-14,22;UBERON:0002049,2.03e-13,78;UBERON:0007798,2.03e-13,78;UBERON:0001009,1.65e-12,112;UBERON:0007500,4.34e-12,59;UBERON:0001981,4.34e-12,59;UBERON:0004537,4.34e-12,59;UBERON:0006965,4.34e-12,59;UBERON:0004872,7.59e-12,83;UBERON:0000926,1.59e-11,315;UBERON:0004120,1.59e-11,315;UBERON:0006603,1.59e-11,315;UBERON:0004535,2.84e-11,109;UBERON:0003081,1.67e-10,203;UBERON:0003914,1.06e-08,117;UBERON:0003915,2.20e-08,9;UBERON:0004700,2.20e-08,9;UBERON:0001917,2.20e-08,9 | |||
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|phase1_expression=2.18014055124668,4.28201047781966,6.3429481843187,0,6.25745532198203,1.74467704820074,5.06599756336621,1.26343974685366,9.66386824339403,0.245733936501509,0,0,0.263766978228454,0.247532705920093,1.65698687863958,5.3786011716142,3.01347264011988,4.38186054232424,2.43966399395253,1.10808952269109,0.816002764977012,1.25381888591235,2.28988789704845,1.77936752594749,1.63205431473244,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0,0,0.142169232487422,0.293600439334847,0,0.200544447470142,0,0,0,0,0,0,0.242584061187816,0.232429036905685,0,0.619412741790207,4.60307827715441,2.81776777182011,5.20260905754887,2.75796544589295,0.645484683583826,4.06279459783025,0.752969358170419,0,0.674170453335254,4.89734227793444,4.49300637906531,3.83602275479425,1.9791078011203,2.39356389145958,3.40979800426155,2.61188314765726,2.26954089876456,3.73693349397345,4.77372463987812,3.12889751052121,4.99534342821768,2.42159801053347,2.20966581592539,2.53169909952708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0.560508562981536,0,0,0.393010762749165,1.02800749499755,0,0.32592226663359,0,0,0,0,0,0,0.128091319725675,0.260118695119756,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0.579297615531196,4.87613732627923,2.68280343881454,1.66221330396589,1.44575660953827,0,0.144846518960824,0,0.486634870302636,1.22895262313288,0,0.43917392846563,0.916853528483988,0.364295288292542,0,2.59637914923747,1.74129737299267,1.72845348674525,0,0,0,4.77029777680092,8.60234595106124,5.55424802572151,4.52246353539208,1.67799774483962,1.92582629358047,1.8809546988313,4.13466814670926,3.5576626268671,6.02497102976406,7.65375702507379,3.04108842287405,3.41686880567437,6.25027236587977,2.43042584364528,9.64437065468061,14.8189385933272,6.98191178996598,6.13266549863533,4.74632829784064,3.29763139074733,0,0,0,0.496971951695318,0.759783069987479,3.17782033951725,1.14734648299525,1.77334191099179,2.24271040056923,0,0,1.55605517699883,0.404132016209064,1.30769522490767,0.454072282934794,0,0.234321431833797,0.312160076830321,1.1409436430889,0.448346041655403,0.469737994575059,0.161872944368132,0.280901613404497,0.204154171254893,0.491337269247072,0.103325781175765,0,0.741800787835671,0,0,0.673344455816265,0.500474079487857,0,0,0.612975591598039,0.600952235626387,1.02088964844019,0.179389635688862,0,0.635795703478686,0.300091096084402,1.03052529238439,0.772921620136887,0.930584281657949,0.168776332241266,0.292311015483596,0.504867548488229,0.276149695926898,0.646584227275248,0.710019185033229,0.10075209822764,0.169560592310488,0,0,0.286804595389004,0.121973706129595,0.265059536642971,0.580969714347592,1.14027160516907,0.504641701751257,0.36497735907583,0,0,0,6.50115099244771,3.60939740834793,0.118306800039844,0.337169380156203,0.241011029883482,0.441175890929576,0.217879444092406,0.71181185733329,0.404493924480493,0.392442930250692,0.38474715694639,4.42893272774789,0,0.4115740113314,2.94017422771084,0,0,0,0.441463099414651,0.245976877086227,0.171567810298526,0,0,0.201057944823262,0,0,2.07986957055916,2.88662684050547,1.15930404975077,0.234817388471643,23.8204638805772,38.4277975438587,32.5334600321163,0,0,0,0,1.0404181360211,0.93733833986777,0,0.141775097242386,0.0895585227028483,0,0,7.8826118063351,0.176096868026452,0.207328115540772,0,0.75745460055828,0.063497894292169,0,0,0,0.102827492703324,0,0,0.224262168690721,0.43596006883328,0.07333828582095,0,0,0,0,1.04007436911366,0.257207374262142,0,0,0.285955987316295,0.542621605391443,1.64648067356154,0.65147236858747,0,0.791951872933429,2.1100756394171,0,0.499864955910285,0,0,0,0.239624855491583,1.14861935834114,2.85273810081437,1.01346914667305,0.410952645100767,1.07436577943937,0,0.591092280605782,0,0.128343036279748,0.76228387266739,0,1.54657762555539,2.17771144934653,2.55175500661265,0.749007023947182,0,0,0.49076596687656,1.00034104211935,1.62759014219841,0,0.535286966391485,0.315404830067869,1.17141414992713,6.01892199455438,6.82222512167955,1.03473071292505,1.99267679560631,0.184369168541703,0.521301686808497,0,0,0,0.215714200818617,0,0.303127571446259,0,0,1.73675465473144,0.153461973288062,0.841980283299221,1.40953064181271,0.511707249066704,0.965123526861645,2.96836132889982,0.308419387605311,0.177561725313127,0.164254312027618,0.519254429183621,0.116210378459959,0.241718899183244,0.200506470303285,0.368323955743585,1.83703117063371,0.364182336013434,0.917870904715969,0,0.308061348417659,0,0,0.316654886678627,14.7853399292166,4.25234263191289,14.6822822949455,7.71136263451447,0.270946437543853,0,0.509752546090077,0,0.223874754722178,0,0,0,0.328014645699706,0.976135183992909,0.9273691048295,0.0915694648183434,0.165018999841176,0,0.650060246036521,3.21367859688319,0.48335359146061,0.308097234229289,1.38153307253517,0.413509717453592,3.6522883255213,1.88521702088497,1.02271952899321,0.890320356467374,0.165284915360978,0,0.382838137483752,0,0.464845549297286,0.31481234683064,0,0,0.532306030317022,0,0.37064843820784,0.572499546967965,0.744316738719335,1.26551769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| ||
|short_description=p6@LYRM1 | |||
}} | }} |
Latest revision as of 03:10, 25 September 2015
Short description: | p6@LYRM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LYRM1_5end |
Coexpression cluster: | C3543_heart_Lymphatic_mature_retinoblastoma_medulla_Renal_Endothelial |
Association with transcript: | -47bp_to_ENST00000219168, ENST00000412082, NM_001128301, NM_001128302, uc002dia.3, uc010bwl.2, uc010bwm.2_5end |
EntrezGene: | LYRM1 |
HGNC: | 25074 |
UniProt: | O43325 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.35e-22 | 24 |
endothelial cell | 8.00e-20 | 36 |
lining cell | 3.58e-18 | 58 |
barrier cell | 3.58e-18 | 58 |
meso-epithelial cell | 5.77e-17 | 45 |
blood vessel endothelial cell | 1.16e-16 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.16e-16 | 18 |
mesodermal cell | 1.77e-13 | 121 |
fat cell | 4.66e-10 | 15 |
endothelial cell of artery | 2.20e-08 | 9 |
lymphangioblast | 1.62e-07 | 6 |
endothelial cell of lymphatic vessel | 1.62e-07 | 6 |
vascular lymphangioblast | 1.62e-07 | 6 |
vein endothelial cell | 2.21e-07 | 6 |
aortic endothelial cell | 5.36e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 1.16e-16 | 18 |
endothelium | 1.16e-16 | 18 |
cardiovascular system endothelium | 1.16e-16 | 18 |
vessel | 4.89e-15 | 68 |
squamous epithelium | 3.70e-14 | 25 |
simple squamous epithelium | 4.77e-14 | 22 |
vasculature | 2.03e-13 | 78 |
vascular system | 2.03e-13 | 78 |
circulatory system | 1.65e-12 | 112 |
epithelial tube open at both ends | 4.34e-12 | 59 |
blood vessel | 4.34e-12 | 59 |
blood vasculature | 4.34e-12 | 59 |
vascular cord | 4.34e-12 | 59 |
splanchnic layer of lateral plate mesoderm | 7.59e-12 | 83 |
mesoderm | 1.59e-11 | 315 |
mesoderm-derived structure | 1.59e-11 | 315 |
presumptive mesoderm | 1.59e-11 | 315 |
cardiovascular system | 2.84e-11 | 109 |
lateral plate mesoderm | 1.67e-10 | 203 |
epithelial tube | 1.06e-08 | 117 |
endothelial tube | 2.20e-08 | 9 |
arterial system endothelium | 2.20e-08 | 9 |
endothelium of artery | 2.20e-08 | 9 |