FFCP PHASE1:Hg19::chrX:70150939..70150952,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84889 | |EntrezGene=84889 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11061 | |HGNC=11061 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WY07 | |UniProt=Q8WY07 | ||
|association_with_transcript=0bp_to_ENST00000374299_5end | |association_with_transcript=0bp_to_ENST00000374299_5end | ||
|cluster_id=chrX:70150939..70150952,- | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_1_at_SLC7A3_5end | |description=CAGE_peak_1_at_SLC7A3_5end | ||
|id=chrX:70150939..70150952,- | |id=chrX:70150939..70150952,- | ||
|ontology_enrichment_celltype=CL:0000540!1.64e-08!6;CL:0000031!1.64e-08!6;CL:0000404!1.64e-08!6;CL:0000047!5.50e-08!8;CL:0002322!1.41e-07!5;CL:0000128!4.10e-07!7;CL:0000126!4.10e-07!7;CL:0000127!4.10e-07!7;CL:0002453!4.10e-07!7 | |ontology_enrichment_celltype=CL:0000540!1.64e-08!6;CL:0000031!1.64e-08!6;CL:0000404!1.64e-08!6;CL:0000047!5.50e-08!8;CL:0002322!1.41e-07!5;CL:0000128!4.10e-07!7;CL:0000126!4.10e-07!7;CL:0000127!4.10e-07!7;CL:0002453!4.10e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0000540;1.54e-14;6!CL:0000404;1.54e-14;6!CL:0002322;8.78e-13;5!CL:0002321;5.19e-11;15!CL:0002319;2.10e-09;25!CL:0000333;6.26e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.59e-14,6;CL:0000031,1.59e-14,6;CL:0000404,1.59e-14,6;CL:0000047,5.28e-14,8;CL:0002322,8.74e-13,5;CL:0002319,1.89e-09,25;CL:0000133,1.92e-08,59 | |||
|ontology_enrichment_development_v019=CL:0000031;1.54e-14;6!UBERON:0009117;6.15e-11;10!UBERON:0005564;6.15e-11;10 | |||
|ontology_enrichment_disease=DOID:3095!3.29e-11!22;DOID:2994!3.29e-11!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.64e-17;22!DOID:2994;2.64e-17;22!DOID:171;1.18e-09;10 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.48e-17,22;DOID:2994,2.48e-17,22;DOID:171,1.09e-09,10 | |||
|ontology_enrichment_uberon=UBERON:0000073!4.29e-29!94;UBERON:0001016!4.29e-29!94;UBERON:0005743!1.69e-28!86;UBERON:0001017!1.38e-25!82;UBERON:0002346!1.11e-23!90;UBERON:0003075!8.46e-21!86;UBERON:0007284!8.46e-21!86;UBERON:0001049!5.74e-20!57;UBERON:0005068!5.74e-20!57;UBERON:0006241!5.74e-20!57;UBERON:0007135!5.74e-20!57;UBERON:0000955!5.98e-19!69;UBERON:0006238!5.98e-19!69;UBERON:0000924!7.28e-19!173;UBERON:0006601!7.28e-19!173;UBERON:0002616!2.03e-18!59;UBERON:0003056!7.00e-18!61;UBERON:0000153!1.42e-17!129;UBERON:0007811!1.42e-17!129;UBERON:0004121!1.15e-16!169;UBERON:0000033!1.94e-16!123;UBERON:0002780!3.00e-15!41;UBERON:0001890!3.00e-15!41;UBERON:0006240!3.00e-15!41;UBERON:0003080!1.15e-14!42;UBERON:0001893!1.83e-14!34;UBERON:0002020!2.12e-14!34;UBERON:0003528!2.12e-14!34;UBERON:0001869!2.20e-14!32;UBERON:0002791!9.10e-14!33;UBERON:0000956!6.88e-13!25;UBERON:0000203!6.88e-13!25;UBERON:0007023!4.20e-12!115;UBERON:0001950!5.70e-11!20;UBERON:0002619!6.76e-11!22;UBERON:0003135!2.38e-08!11;UBERON:0000473!1.14e-07!8;UBERON:0000064!8.19e-07!219 | |ontology_enrichment_uberon=UBERON:0000073!4.29e-29!94;UBERON:0001016!4.29e-29!94;UBERON:0005743!1.69e-28!86;UBERON:0001017!1.38e-25!82;UBERON:0002346!1.11e-23!90;UBERON:0003075!8.46e-21!86;UBERON:0007284!8.46e-21!86;UBERON:0001049!5.74e-20!57;UBERON:0005068!5.74e-20!57;UBERON:0006241!5.74e-20!57;UBERON:0007135!5.74e-20!57;UBERON:0000955!5.98e-19!69;UBERON:0006238!5.98e-19!69;UBERON:0000924!7.28e-19!173;UBERON:0006601!7.28e-19!173;UBERON:0002616!2.03e-18!59;UBERON:0003056!7.00e-18!61;UBERON:0000153!1.42e-17!129;UBERON:0007811!1.42e-17!129;UBERON:0004121!1.15e-16!169;UBERON:0000033!1.94e-16!123;UBERON:0002780!3.00e-15!41;UBERON:0001890!3.00e-15!41;UBERON:0006240!3.00e-15!41;UBERON:0003080!1.15e-14!42;UBERON:0001893!1.83e-14!34;UBERON:0002020!2.12e-14!34;UBERON:0003528!2.12e-14!34;UBERON:0001869!2.20e-14!32;UBERON:0002791!9.10e-14!33;UBERON:0000956!6.88e-13!25;UBERON:0000203!6.88e-13!25;UBERON:0007023!4.20e-12!115;UBERON:0001950!5.70e-11!20;UBERON:0002619!6.76e-11!22;UBERON:0003135!2.38e-08!11;UBERON:0000473!1.14e-07!8;UBERON:0000064!8.19e-07!219 | ||
|ontology_enrichment_uberon_v019=UBERON:0000922;5.15e-16;49!UBERON:0000473;1.61e-13;8!UBERON:0003135;2.09e-12;11!UBERON:0001950;1.52e-07;20!UBERON:0002050;1.74e-07;5!UBERON:0005423;1.74e-07;5!UBERON:0000956;4.55e-07;25!UBERON:0000203;4.55e-07;25!UBERON:0000013;6.26e-07;5!UBERON:0002410;6.26e-07;5!UBERON:0003101;6.80e-07;22!UBERON:0000079;6.80e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.18e-17,89;UBERON:0001017,1.78e-14,81;UBERON:0000473,2.12e-13,8;UBERON:0003135,2.66e-12,11;UBERON:0004121,3.37e-09,171;UBERON:0000924,3.37e-09,171;UBERON:0006601,3.37e-09,171;UBERON:0001049,5.31e-09,56;UBERON:0005068,5.31e-09,56;UBERON:0006241,5.31e-09,56;UBERON:0007135,5.31e-09,56;UBERON:0011216,6.40e-09,223;UBERON:0002346,7.73e-09,86;UBERON:0000073,1.30e-08,53;UBERON:0002616,1.30e-08,53;UBERON:0000955,3.41e-08,68;UBERON:0006238,3.41e-08,68;UBERON:0001950,1.37e-07,20;UBERON:0000956,4.18e-07,25;UBERON:0000203,4.18e-07,25;UBERON:0000013,5.69e-07,5;UBERON:0002410,5.69e-07,5;UBERON:0003075,7.23e-07,82;UBERON:0007284,7.23e-07,82;UBERON:0003101,7.65e-07,22;UBERON:0000079,7.65e-07,22;UBERON:0002619,9.13e-07,22;UBERON:0003528,9.32e-07,34;UBERON:0002020,9.32e-07,34;UBERON:0001893,9.98e-07,34 | |||
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| ||
|short_description=p1@SLC7A3 | |short_description=p1@SLC7A3 | ||
}} | }} |
Latest revision as of 06:28, 16 September 2015
Short description: | p1@SLC7A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC7A3_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000374299_5end |
EntrezGene: | SLC7A3 |
HGNC: | 11061 |
UniProt: | Q8WY07 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.59e-14 | 6 |
neuroblast | 1.59e-14 | 6 |
electrically signaling cell | 1.59e-14 | 6 |
neuronal stem cell | 5.28e-14 | 8 |
embryonic stem cell | 8.74e-13 | 5 |
neural cell | 1.89e-09 | 25 |
neurectodermal cell | 1.92e-08 | 59 |
Ontology term | p-value | n |
---|---|---|
nervous system | 6.18e-17 | 89 |
central nervous system | 1.78e-14 | 81 |
testis | 2.12e-13 | 8 |
male reproductive organ | 2.66e-12 | 11 |
ectoderm-derived structure | 3.37e-09 | 171 |
ectoderm | 3.37e-09 | 171 |
presumptive ectoderm | 3.37e-09 | 171 |
neural tube | 5.31e-09 | 56 |
neural rod | 5.31e-09 | 56 |
future spinal cord | 5.31e-09 | 56 |
neural keel | 5.31e-09 | 56 |
organ system subdivision | 6.40e-09 | 223 |
neurectoderm | 7.73e-09 | 86 |
regional part of nervous system | 1.30e-08 | 53 |
regional part of brain | 1.30e-08 | 53 |
brain | 3.41e-08 | 68 |
future brain | 3.41e-08 | 68 |
neocortex | 1.37e-07 | 20 |
cerebral cortex | 4.18e-07 | 25 |
pallium | 4.18e-07 | 25 |
sympathetic nervous system | 5.69e-07 | 5 |
autonomic nervous system | 5.69e-07 | 5 |
neural plate | 7.23e-07 | 82 |
presumptive neural plate | 7.23e-07 | 82 |
male organism | 7.65e-07 | 22 |
male reproductive system | 7.65e-07 | 22 |
regional part of cerebral cortex | 9.13e-07 | 22 |
brain grey matter | 9.32e-07 | 34 |
gray matter | 9.32e-07 | 34 |
telencephalon | 9.98e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.48e-17 | 22 |
germ cell cancer | 2.48e-17 | 22 |
neuroectodermal tumor | 1.09e-09 | 10 |