FFCP PHASE1:Hg19::chr7:27205106..27205134,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3205 | |EntrezGene=3205 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5109 | |HGNC=5109 | ||
|TSSclassifier=strong | |||
|UniProt=P31269 | |UniProt=P31269 | ||
|association_with_transcript=0bp_to_ENST00000343483_5end | |association_with_transcript=0bp_to_ENST00000343483_5end | ||
|cluster_id=chr7:27205106..27205134,- | |||
|coexpression_cluster_id=C4681 | |||
|description=CAGE_peak_2_at_HOXA9_5end | |description=CAGE_peak_2_at_HOXA9_5end | ||
|id=chr7:27205106..27205134,- | |id=chr7:27205106..27205134,- | ||
|ontology_enrichment_celltype=CL:1000497!6.65e-10!18;CL:0002518!6.65e-10!18;CL:1000449!1.89e-08!16;CL:1000507!8.28e-08!12;CL:1000494!8.28e-08!12;CL:0002139!1.63e-07!24;CL:0002078!9.70e-07!44 | |ontology_enrichment_celltype=CL:1000497!6.65e-10!18;CL:0002518!6.65e-10!18;CL:1000449!1.89e-08!16;CL:1000507!8.28e-08!12;CL:1000494!8.28e-08!12;CL:0002139!1.63e-07!24;CL:0002078!9.70e-07!44 | ||
|ontology_enrichment_celltype_v019=CL:1000497;9.58e-13;17!CL:0002518;9.58e-13;17!CL:1000449;5.51e-11;15!CL:1000507;3.16e-10;10!CL:1000494;3.16e-10;10!CL:0002681;2.04e-08;12!CL:0002584;2.04e-08;12!CL:0002620;1.79e-07;23!CL:0002543;3.96e-07;6!CL:0002139;7.16e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,9.50e-13,17;CL:0002518,9.50e-13,17;CL:1000449,5.55e-11,15;CL:1000507,3.20e-10,10;CL:1000494,3.20e-10,10;CL:0002681,2.09e-08,12;CL:0002584,2.09e-08,12;CL:0002620,2.00e-07,23;CL:0002543,3.97e-07,6;CL:0002078,6.77e-07,45;CL:0002139,6.84e-07,24 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:8692;5.05e-08;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,2.45e-08,31 | |||
|ontology_enrichment_uberon=UBERON:0001008!5.97e-20!45;UBERON:0006554!9.97e-20!44;UBERON:0000489!1.89e-13!32;UBERON:0002113!1.22e-12!27;UBERON:0003918!1.22e-12!27;UBERON:0005095!1.22e-12!27;UBERON:0007687!1.22e-12!27;UBERON:0003064!4.17e-11!37;UBERON:0000080!5.85e-09!18;UBERON:0002120!5.85e-09!18;UBERON:0004875!5.85e-09!18;UBERON:0005721!5.85e-09!18;UBERON:0005754!5.85e-09!18;UBERON:0007297!5.85e-09!18;UBERON:0006555!7.75e-09!17;UBERON:0005103!7.75e-09!17;UBERON:0000083!7.75e-09!17;UBERON:0009201!7.75e-09!17;UBERON:0004819!7.75e-09!17;UBERON:0006553!7.75e-09!17;UBERON:0003074!7.75e-09!17;UBERON:0003060!7.75e-09!17;UBERON:0004876!1.33e-08!20;UBERON:0004211!1.89e-08!16;UBERON:0001285!1.89e-08!16;UBERON:0007684!1.89e-08!16;UBERON:0003220!1.89e-08!16;UBERON:0004208!1.89e-08!16;UBERON:0003887!4.73e-08!21;UBERON:0009773!8.28e-08!12;UBERON:0001231!8.28e-08!12;UBERON:0004810!8.28e-08!12;UBERON:0001638!9.45e-07!9;UBERON:0003920!9.45e-07!9;UBERON:0004582!9.45e-07!9 | |ontology_enrichment_uberon=UBERON:0001008!5.97e-20!45;UBERON:0006554!9.97e-20!44;UBERON:0000489!1.89e-13!32;UBERON:0002113!1.22e-12!27;UBERON:0003918!1.22e-12!27;UBERON:0005095!1.22e-12!27;UBERON:0007687!1.22e-12!27;UBERON:0003064!4.17e-11!37;UBERON:0000080!5.85e-09!18;UBERON:0002120!5.85e-09!18;UBERON:0004875!5.85e-09!18;UBERON:0005721!5.85e-09!18;UBERON:0005754!5.85e-09!18;UBERON:0007297!5.85e-09!18;UBERON:0006555!7.75e-09!17;UBERON:0005103!7.75e-09!17;UBERON:0000083!7.75e-09!17;UBERON:0009201!7.75e-09!17;UBERON:0004819!7.75e-09!17;UBERON:0006553!7.75e-09!17;UBERON:0003074!7.75e-09!17;UBERON:0003060!7.75e-09!17;UBERON:0004876!1.33e-08!20;UBERON:0004211!1.89e-08!16;UBERON:0001285!1.89e-08!16;UBERON:0007684!1.89e-08!16;UBERON:0003220!1.89e-08!16;UBERON:0004208!1.89e-08!16;UBERON:0003887!4.73e-08!21;UBERON:0009773!8.28e-08!12;UBERON:0001231!8.28e-08!12;UBERON:0004810!8.28e-08!12;UBERON:0001638!9.45e-07!9;UBERON:0003920!9.45e-07!9;UBERON:0004582!9.45e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0006554;5.14e-19;30!UBERON:0001008;5.14e-19;30!UBERON:0000489;1.30e-14;29!UBERON:0002113;2.39e-14;24!UBERON:0011143;2.39e-14;24!UBERON:0006555;5.51e-11;15!UBERON:0004819;5.51e-11;15!UBERON:0001285;5.51e-11;15!UBERON:0007684;5.51e-11;15!UBERON:0004211;3.16e-10;10!UBERON:0009773;3.16e-10;10!UBERON:0001231;3.16e-10;10!UBERON:0004810;3.16e-10;10!UBERON:0001225;2.04e-08;12!UBERON:0008987;2.04e-08;12!UBERON:0004765;3.74e-08;26!UBERON:0001474;3.82e-07;18!UBERON:0010260;8.66e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001008,2.03e-20,48;UBERON:0006554,3.87e-20,47;UBERON:0000489,2.80e-15,31;UBERON:0002113,5.75e-15,26;UBERON:0003918,5.75e-15,26;UBERON:0011143,5.75e-15,26;UBERON:0005095,5.75e-15,26;UBERON:0007687,5.75e-15,26;UBERON:0006555,2.00e-11,16;UBERON:0004819,2.00e-11,16;UBERON:0004211,5.55e-11,15;UBERON:0009773,5.55e-11,15;UBERON:0001231,5.55e-11,15;UBERON:0001285,5.55e-11,15;UBERON:0007684,5.55e-11,15;UBERON:0004208,5.55e-11,15;UBERON:0004810,3.20e-10,10;UBERON:0001225,2.09e-08,12;UBERON:0008987,2.09e-08,12;UBERON:0003064,2.21e-08,28;UBERON:0003104,4.13e-08,160;UBERON:0009142,4.13e-08,160;UBERON:0002199,1.65e-07,46;UBERON:0002416,1.65e-07,46;UBERON:0000162,5.74e-07,14;UBERON:0001353,5.74e-07,14;UBERON:0000163,5.74e-07,14;UBERON:0006866,5.74e-07,14;UBERON:0000164,5.74e-07,14;UBERON:0000931,5.74e-07,14;UBERON:0010260,7.56e-07,9 | |||
|phase1_expression=4.72363786103447,3.8538094300377,0.140954404095971,3.00219895059391,0,3.48935409640147,5.06599756336621,3.15859936713415,4.17897005119742,0.245733936501509,0,0,0,10.7676727075241,6.2965501388304,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0.464448369948228,0,0,0,0,0,6.75281010470149,0.553995408531877,0.200544447470142,0,0,0,0,0.436194716338694,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0.316462387440884,0.211255286311942,0,0,0.22465726229299,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,13.2171328579026,3.36305137788922,8.69167479757754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,6.86734389530676,4.01070328508712,9.41502373245354,6.36228757640879,8.27279279514481,0,0,0.263504357079378,4.06035134042909,0,0,0.324547393654683,0,0,0.238490624305342,0,0.371457501329565,0.39752481473341,0,0,0,0.838998872419812,0.550236083880135,3.13492449805216,2.58416759169329,4.98072767761394,1.00416183829401,3.22263453687318,3.80136052859256,3.66093086322254,3.67663080345869,8.91156142669936,25.9862209306672,27.3925834603927,27.251978276964,19.9311628705648,13.2897192339538,17.0377621855279,0,0,0,4.47274756525787,0,0,0,0.354668382198357,0.560677600142307,0,0.24666754841716,0,0,0,0,0,0,0,0,8.36912611090086,6.22402842811954,2.26622122115384,3.79217178096071,0,0,0,0,0,4.55080680969013,2.15585442544872,0,0,0,0,0,0,0,3.7671823494661,5.33893472046419,4.02670612203168,5.40163972951924,6.59536187126009,3.34932702059318,2.79175284497385,5.06328996723799,5.45647228902712,4.03894038790583,8.65269047237614,0,7.81021103536552,8.86618464403234,3.89989362314122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,3.19769940212095,0,0.329250856225877,0,21.4126711236774,0,0,0,0,0,0,9.23945265670872,3.70388410061289,9.32245345949531,0,0,0,0,0,0,0,0,10.7470227243418,0.581267877027924,0,0,0,0.414656231081544,0.144119953416961,0.12624243342638,0.317489471460845,1.90994212779139,0,0,0.822619941626588,2.40274446275134,0,0,0,0,3.49033632546,0,7.607724773004,2.92531928243358,4.16029747645464,9.00225809917497,2.83698264046557,15.4524863829338,0,4.88359444852299,9.05564370458846,6.5147236858747,0,7.12756685640086,0.301439377059586,6.97226766880235,0.199945982364114,0,0,0,0,0,5.70547620162874,3.76431397335706,5.54786070886035,0.895304816199478,4.48340575974109,0,1.07813787429759,0.513372145118994,0.254094624222463,0,0,0,0,0,0,0,9.32455337065463,7.00238729483548,5.69656549769445,0,0,0,0,3.00946099727719,2.27407504055985,4.1389228517002,5.31380478828349,6.26855173041791,1.65078867489357,0,0,0.620304078368662,0,0,0,0,0.30239029332968,5.45837177201309,3.22270143904931,6.45518217196069,0.128139149255701,2.04682899626681,0.64341568457443,1.48418066444991,6.47680713971153,7.81271591377759,3.36721339656617,0,6.97262270759755,2.41718899183244,8.82228469334453,13.0755004288973,4.36294903025506,7.10155555226196,4.327105693661,12.1823895485001,13.2466379819593,19.6087442294214,14.6139224653261,18.3659834273604,4.54933536283586,2.55140557914773,15.1141141271498,9.25363516141736,11.6506968143857,18.0608318587747,13.508442471387,25.7633562767905,27.5365948308279,0,0,0,0,0,0.515205058238611,13.0944334690231,8.33345949197939,1.14853107599234,5.85054221432869,0,4.06017016826912,0.924291702687866,0.614014698904518,3.30807773962873,5.90811346775505,4.93056759308377,7.15903670295248,1.33548053470106,0,0,0,0,0,0,0,1.84820148105653,0,0,0,0,0,0.632758849437452,0,0,0,0,0,4.8565563547495,6.03981465419321,6.59749453135844,0,0,0,0,3.89941583410055,1.05650146756755,1.63799893689583,4.66637925447252,0,0,0,0.438450885253763,0,0,5.47858017799301,8.675057946793,1.69017361519345,5.30622003154991,4.81420300964294,4.63672366925625,3.90237170477658,4.64436797654861,3.29294892959902,0,0,0,0.670302275535787,0,0.753150406214233,13.7761719254794,11.7930032967338,19.5109267556137,14.2428508128315,0,0,0,0,0,0,0,0,6.94356462328575,0.962479855263359,0,0,0,0,0,27.5419532577287,37.3435471758115,17.3572337833584,0,18.2518165773748,12.7811420258588,0,10.0253790836027,19.8071380027876,19.4311570875476,14.7313786249465,41.3070850559617,36.4115665441111,20.2778904443582,15.4336514445767,16.5180650294789,10.9417333425143,1.11362469558097,0,0,0,0,0,0.146508179271894,0,0,19.3212579828361,0,0,0,0,0,0,0,0,0.398495976502139,4.14425873296722,0,0,0,0,0,0,14.3240263663524,6.80639498894842,0,4.44547960578548,0,0,0,0,0,3.62499787717397,0,0,0,0.344743373241465,0,5.90324982773194,0,0,0,0,0,0,0,7.94715342388039,3.69361240818226,0,0,0,0,0.638002319463839,3.93869651628008,0.533034776018635,0,0,1.99454018280188,0,0,0,0,8.26470210697969,0,47.3375143661528,0.989471500037586,0,9.95261931078505,2.74218449960351,7.33236173920351,0,0,0,0,0,0,0,0,0,1.57833761139756,0,0.30607276163049,0.189559738885464,12.7774906502319,17.3159279633403,0,0,0,0,38.9915078060816,0,32.9763502836749,25.5760157251526,10.9694600291307,5.2418000472609,12.7269664028996,0,0,0,0.387956065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| ||
|short_description=p2@HOXA9 | |short_description=p2@HOXA9 | ||
}} | }} |
Latest revision as of 01:42, 18 September 2015
Short description: | p2@HOXA9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HOXA9_5end |
Coexpression cluster: | C4681_smallcell_acute_small_clear_renal_endometrioid_embryonic |
Association with transcript: | 0bp_to_ENST00000343483_5end |
EntrezGene: | HOXA9 |
HGNC: | 5109 |
UniProt: | P31269 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 9.50e-13 | 17 |
kidney epithelial cell | 9.50e-13 | 17 |
epithelial cell of nephron | 5.55e-11 | 15 |
kidney tubule cell | 3.20e-10 | 10 |
nephron tubule epithelial cell | 3.20e-10 | 10 |
kidney cortical cell | 2.09e-08 | 12 |
renal cortical epithelial cell | 2.09e-08 | 12 |
skin fibroblast | 2.00e-07 | 23 |
vein endothelial cell | 3.97e-07 | 6 |
meso-epithelial cell | 6.77e-07 | 45 |
endothelial cell of vascular tree | 6.84e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
renal system | 2.03e-20 | 48 |
urinary system structure | 3.87e-20 | 47 |
cavitated compound organ | 2.80e-15 | 31 |
kidney | 5.75e-15 | 26 |
kidney mesenchyme | 5.75e-15 | 26 |
upper urinary tract | 5.75e-15 | 26 |
kidney rudiment | 5.75e-15 | 26 |
kidney field | 5.75e-15 | 26 |
excretory tube | 2.00e-11 | 16 |
kidney epithelium | 2.00e-11 | 16 |
nephron epithelium | 5.55e-11 | 15 |
renal tubule | 5.55e-11 | 15 |
nephron tubule | 5.55e-11 | 15 |
nephron | 5.55e-11 | 15 |
uriniferous tubule | 5.55e-11 | 15 |
nephrogenic mesenchyme | 5.55e-11 | 15 |
nephron tubule epithelium | 3.20e-10 | 10 |
cortex of kidney | 2.09e-08 | 12 |
renal parenchyma | 2.09e-08 | 12 |
intermediate mesoderm | 2.21e-08 | 28 |
mesenchyme | 4.13e-08 | 160 |
entire embryonic mesenchyme | 4.13e-08 | 160 |
integument | 1.65e-07 | 46 |
integumental system | 1.65e-07 | 46 |
cloaca | 5.74e-07 | 14 |
anal region | 5.74e-07 | 14 |
embryonic cloaca | 5.74e-07 | 14 |
terminal part of digestive tract | 5.74e-07 | 14 |
primitive urogenital sinus | 5.74e-07 | 14 |
proctodeum | 5.74e-07 | 14 |
umbilical blood vessel | 7.56e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 2.45e-08 | 31 |