FFCP PHASE1:Hg19::chr7:45954480..45954494,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr7:45954480..45954494,+ | |||
|coexpression_cluster_id=C223 | |||
|description=CAGE_peak_at_chr7:45954480..45954494,+ | |description=CAGE_peak_at_chr7:45954480..45954494,+ | ||
|id=chr7:45954480..45954494,+ | |id=chr7:45954480..45954494,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.75e-12!180;CL:0000057!7.35e-12!75;CL:0002334!7.72e-11!12;CL:0002620!1.23e-10!23;CL:0000153!1.23e-10!9;CL:0000447!1.23e-10!9;CL:0002595!7.68e-09!5;CL:0000667!1.08e-07!6;CL:0000058!1.08e-07!6;CL:0000138!1.08e-07!6;CL:0002580!1.62e-07!3;CL:0002579!2.80e-07!3;CL:0000359!4.31e-07!32 | |ontology_enrichment_celltype=CL:0000055!2.75e-12!180;CL:0000057!7.35e-12!75;CL:0002334!7.72e-11!12;CL:0002620!1.23e-10!23;CL:0000153!1.23e-10!9;CL:0000447!1.23e-10!9;CL:0002595!7.68e-09!5;CL:0000667!1.08e-07!6;CL:0000058!1.08e-07!6;CL:0000138!1.08e-07!6;CL:0002580!1.62e-07!3;CL:0002579!2.80e-07!3;CL:0000359!4.31e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0000153;2.01e-49;9!CL:0000447;2.01e-49;9!CL:0000138;7.78e-34;6!CL:0000327;1.31e-29;15!CL:0000214;2.49e-17;3!CL:0000499;9.31e-16;28!CL:0002616;3.73e-14;1!CL:0002591;1.25e-13;1!CL:0002595;8.71e-11;5!CL:0000151;1.34e-09;36!CL:0002593;1.87e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,1.07e-49,9;CL:0000447,1.07e-49,9;CL:0000058,5.33e-34,6;CL:0000138,5.33e-34,6;CL:0000327,9.03e-30,15;CL:0000214,1.94e-17,3;CL:0000499,7.65e-16,28;CL:0002616,3.98e-14,1;CL:0002591,1.42e-13,1;CL:0000151,2.96e-12,36;CL:0002595,8.71e-11,5;CL:0002593,2.25e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!3.15e-08!5;DOID:450!3.15e-08!5;DOID:66!3.15e-08!5;DOID:423!3.15e-08!5;DOID:0080000!3.15e-08!5;DOID:11722!3.15e-08!5 | |ontology_enrichment_disease=DOID:17!3.15e-08!5;DOID:450!3.15e-08!5;DOID:66!3.15e-08!5;DOID:423!3.15e-08!5;DOID:0080000!3.15e-08!5;DOID:11722!3.15e-08!5 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003834!7.68e-09!5;UBERON:0001533!7.68e-09!5;UBERON:0004457!1.01e-08!12;UBERON:0000042!1.01e-08!12;UBERON:0003513!3.80e-08!8 | |ontology_enrichment_uberon=UBERON:0003834!7.68e-09!5;UBERON:0001533!7.68e-09!5;UBERON:0004457!1.01e-08!12;UBERON:0000042!1.01e-08!12;UBERON:0003513!3.80e-08!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0006915;2.49e-17;3!UBERON:0007616;2.49e-17;3!UBERON:0002217;2.49e-17;3!UBERON:0002018;2.49e-17;3!UBERON:0003834;8.71e-11;5!UBERON:0001533;8.71e-11;5!UBERON:0003513;5.86e-08;7!UBERON:0005406;1.02e-07;2!UBERON:0000078;1.87e-07;2!UBERON:0002012;1.87e-07;2!UBERON:0002456;1.87e-07;2!UBERON:0008886;1.87e-07;2!UBERON:0004905;4.55e-07;8!UBERON:0000982;4.55e-07;8!UBERON:0004770;4.55e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006915,1.94e-17,3;UBERON:0007616,1.94e-17,3;UBERON:0002217,1.94e-17,3;UBERON:0002018,1.94e-17,3;UBERON:0003834,8.71e-11,5;UBERON:0001533,8.71e-11,5;UBERON:0003513,5.87e-08,7;UBERON:0005406,1.05e-07,2;UBERON:0000078,1.99e-07,2;UBERON:0007497,1.99e-07,2;UBERON:0003643,1.99e-07,2;UBERON:0003504,1.99e-07,2;UBERON:0003469,1.99e-07,2;UBERON:0003496,1.99e-07,2;UBERON:0002012,1.99e-07,2;UBERON:0008886,1.99e-07,2;UBERON:0007303,1.99e-07,2;UBERON:0002061,1.99e-07,2;UBERON:0005432,1.99e-07,2;UBERON:0004363,1.99e-07,2;UBERON:0002456,2.25e-07,2;UBERON:0004905,4.15e-07,8;UBERON:0000982,4.15e-07,8;UBERON:0004770,4.15e-07,8 | |||
|phase1_expression=0.181678379270557,0,0.422863212287913,0,0,5.23403114460221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.4575660953827,1.50401373190767,3.62116297402059,0,5.83961844363163,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,1.06748995729705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.612975591598039,0,0,0.717558542755448,0,0.211931901159562,4.80145753735044,0.309157587715317,0.772921620136887,0.18611685633159,0,0.0974370051611986,3.02920529092937,0.644349290496095,0,3.90510551768276,0.201504196455281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0,0,0,0,0,1.14861935834114,0,0.434343920002738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0.343143423810856,0,0,0,0,0,0,0.248107807818777,0.153461973288062,0.561320188866147,0.128139149255701,0.511707249066704,0.160853921143607,0,0,0.532685175939381,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.869932992075073,0.18532421910392,0.429374660225974,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0.731140468893853,1.05650146756755,0,0,1.13008116620243,0,1.32687795048244,0.876901770507525,0,0,0,0.30982349809975,0,0,0,0.35667105148125,0,1.26664581178598,1.31717957183961,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0.593929361665277,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0.933118762985422,0,0.179021174675609,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599428828746391,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0.720599767084807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179287339332845,0,0,0,0.25426853765475,0.542999601753713,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0.50313580350515,0,0,0.151230923763239,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0.464033759878494,0,0,0,0,0,0,0,0,0.680117776536817,0,0,0.179088841081487,0.617602894321944,0,0.176689145945881,0.38582807654183,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0.0679697329768317,0,0,0,0,0,0,0,0.647782773655864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0.0644578879735772,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0.865253124247578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 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|phase1_expression=0.181678379270557,0,0.422863212287913,0,0,5.23403114460221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.4575660953827,1.50401373190767,3.62116297402059,0,5.83961844363163,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,1.06748995729705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.612975591598039,0,0,0.717558542755448,0,0.211931901159562,4.80145753735044,0.309157587715317,0.772921620136887,0.18611685633159,0,0.0974370051611986,3.02920529092937,0.644349290496095,0,3.90510551768276,0.201504196455281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0,0,0,0,0,1.14861935834114,0,0.434343920002738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0.343143423810856,0,0,0,0,0,0,0.248107807818777,0.153461973288062,0.561320188866147,0.128139149255701,0.511707249066704,0.160853921143607,0,0,0.532685175939381,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.869932992075073,0.18532421910392,0.429374660225974,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0.731140468893853,1.05650146756755,0,0,1.13008116620243,0,1.32687795048244,0.876901770507525,0,0,0,0.30982349809975,0,0,0,0.35667105148125,0,1.26664581178598,1.31717957183961,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0.593929361665277,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0.933118762985422,0,0.179021174675609,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599428828746391,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0.720599767084807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179287339332845,0,0,0,0.25426853765475,0.542999601753713,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0.50313580350515,0,0,0.151230923763239,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0.464033759878494,0,0,0,0,0,0,0,0,0.680117776536817,0,0,0.179088841081487,0.617602894321944,0,0.176689145945881,0.38582807654183,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0.0679697329768317,0,0,0,0,0,0,0,0.647782773655864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0.0644578879735772,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0.865253124247578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 | ||
|short_description=p@chr7:45954480..45954494,+ | |short_description=p@chr7:45954480..45954494,+ | ||
}} | }} |
Latest revision as of 10:26, 31 July 2015
Short description: | p@chr7:45954480..45954494, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:45954480..45954494, + |
Coexpression cluster: | C223_Chondrocyte_basal_renal_Fibroblast_Smooth_spindle_Synoviocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 1.07e-49 | 9 |
carbohydrate secreting cell | 1.07e-49 | 9 |
chondroblast | 5.33e-34 | 6 |
chondrocyte | 5.33e-34 | 6 |
extracellular matrix secreting cell | 9.03e-30 | 15 |
synovial cell | 1.94e-17 | 3 |
stromal cell | 7.65e-16 | 28 |
perirenal adipocyte cell | 3.98e-14 | 1 |
smooth muscle cell of the pulmonary artery | 1.42e-13 | 1 |
secretory cell | 2.96e-12 | 36 |
smooth muscle cell of the subclavian artery | 8.71e-11 | 5 |
smooth muscle cell of the internal thoracic artery | 2.25e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
stratified squamous epithelium | 1.94e-17 | 3 |
layer of synovial tissue | 1.94e-17 | 3 |
synovial joint | 1.94e-17 | 3 |
synovial membrane of synovial joint | 1.94e-17 | 3 |
thoracic segment blood vessel | 8.71e-11 | 5 |
subclavian artery | 8.71e-11 | 5 |
trunk blood vessel | 5.87e-08 | 7 |
perirenal fat | 1.05e-07 | 2 |
mixed ectoderm/mesoderm/endoderm-derived structure | 1.99e-07 | 2 |
developing epithelial placode | 1.99e-07 | 2 |
respiratory system arterial blood vessel | 1.99e-07 | 2 |
respiratory system blood vessel | 1.99e-07 | 2 |
respiratory system artery | 1.99e-07 | 2 |
head blood vessel | 1.99e-07 | 2 |
pulmonary artery | 1.99e-07 | 2 |
pulmonary vascular system | 1.99e-07 | 2 |
pharyngeal vasculature | 1.99e-07 | 2 |
truncus arteriosus | 1.99e-07 | 2 |
aortic sac | 1.99e-07 | 2 |
pharyngeal arch artery | 1.99e-07 | 2 |
internal thoracic artery | 2.25e-07 | 2 |
articulation | 4.15e-07 | 8 |
skeletal joint | 4.15e-07 | 8 |
articular system | 4.15e-07 | 8 |