FFCP PHASE1:Hg19::chr17:38720548..38720562,-: Difference between revisions
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|id=chr17:38720548..38720562,-
|short_description=p@chr17:38720548..38720562,-
|description=CAGE_peak_at_chr17:38720548..38720562,-
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr17:38720548..38720562,- | |||
|coexpression_cluster_id=C306 | |||
|description=CAGE_peak_at_chr17:38720548..38720562,- | |||
|id=chr17:38720548..38720562,- | |||
|ontology_enrichment_celltype=CL:0000738!1.42e-46!140;CL:0000838!2.72e-46!52;CL:0000542!3.32e-45!53;CL:0000051!3.32e-45!53;CL:0002087!1.50e-43!119;CL:0002031!3.90e-39!124;CL:0000988!4.17e-36!182;CL:0000037!1.04e-34!172;CL:0000566!1.04e-34!172;CL:0002032!7.65e-34!165;CL:0000837!7.65e-34!165;CL:0000791!6.22e-29!18;CL:0000789!6.22e-29!18;CL:0002420!6.22e-29!18;CL:0002419!6.22e-29!18;CL:0000790!6.22e-29!18;CL:0000084!1.35e-27!25;CL:0000827!1.35e-27!25;CL:0000625!1.18e-18!11;CL:0000945!9.59e-15!24;CL:0000826!9.59e-15!24;CL:0000624!5.10e-14!6;CL:0002057!9.45e-11!42;CL:0000860!9.58e-10!45;CL:0000080!3.13e-09!6;CL:0000236!4.55e-09!14;CL:0000134!8.95e-09!358;CL:0002320!2.55e-08!365;CL:0000623!4.21e-08!3;CL:0000825!4.21e-08!3;CL:0000898!2.21e-07!3;CL:0000453!2.28e-07!5;CL:0000219!3.50e-07!390;CL:0002009!6.13e-07!65;CL:0000766!6.70e-07!76 | |||
|ontology_enrichment_celltype_v019=CL:0000791;4.07e-27;18!CL:0000789;4.07e-27;18!CL:0002419;4.07e-27;18!CL:0000084;5.80e-23;25!CL:0000624;7.28e-22;6!CL:0000542;2.00e-19;53!CL:0000623;2.02e-16;3!CL:0002087;6.51e-13;104!CL:0000625;1.39e-11;11!CL:0000738;5.33e-09;136!CL:0002393;1.37e-08;6!CL:0002397;1.37e-08;6!CL:0000898;1.36e-07;3!CL:0000945;1.97e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,9.96e-36,52;CL:0000542,5.73e-35,53;CL:0000051,5.73e-35,53;CL:0000738,1.52e-32,136;CL:0002087,9.34e-32,115;CL:0002031,8.43e-28,120;CL:0000791,4.39e-27,18;CL:0000789,4.39e-27,18;CL:0002420,4.39e-27,18;CL:0002419,4.39e-27,18;CL:0000790,4.39e-27,18;CL:0000988,2.66e-25,177;CL:0000037,3.84e-25,168;CL:0002032,1.58e-24,161;CL:0000837,1.58e-24,161;CL:0000084,7.34e-23,25;CL:0000827,7.34e-23,25;CL:0000624,9.28e-22,6;CL:0000623,1.52e-16,3;CL:0000825,1.52e-16,3;CL:0000625,1.30e-11,11;CL:0000134,1.70e-08,354;CL:0002320,3.34e-08,361;CL:0000898,1.56e-07,3;CL:0000945,1.78e-07,24;CL:0000826,1.78e-07,24;CL:0000219,3.58e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000790;4.07e-27;18!CL:0000051;2.00e-19;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.25e-16!102;UBERON:0003061!9.25e-16!102;UBERON:0002193!1.11e-15!112;UBERON:0000178!7.65e-13!15;UBERON:0000179!7.65e-13!15;UBERON:0000463!7.65e-13!15;UBERON:0004177!5.98e-10!7;UBERON:0002384!1.05e-07!375;UBERON:0002405!7.93e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,8.36e-08,371;UBERON:0002193,2.48e-07,108;UBERON:0002390,3.59e-07,98;UBERON:0003061,3.59e-07,98 | |||
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| ||
|short_description=p@chr17:38720548..38720562,- | |||
}} | }} |
Latest revision as of 16:33, 25 July 2015
Short description: | p@chr17:38720548..38720562, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:38720548..38720562, - |
Coexpression cluster: | C306_CD4_CD8_Neutrophils_Natural_CD19_CD14_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 9.96e-36 | 52 |
lymphocyte | 5.73e-35 | 53 |
common lymphoid progenitor | 5.73e-35 | 53 |
leukocyte | 1.52e-32 | 136 |
nongranular leukocyte | 9.34e-32 | 115 |
hematopoietic lineage restricted progenitor cell | 8.43e-28 | 120 |
mature alpha-beta T cell | 4.39e-27 | 18 |
alpha-beta T cell | 4.39e-27 | 18 |
immature T cell | 4.39e-27 | 18 |
mature T cell | 4.39e-27 | 18 |
immature alpha-beta T cell | 4.39e-27 | 18 |
hematopoietic cell | 2.66e-25 | 177 |
hematopoietic stem cell | 3.84e-25 | 168 |
hematopoietic oligopotent progenitor cell | 1.58e-24 | 161 |
hematopoietic multipotent progenitor cell | 1.58e-24 | 161 |
T cell | 7.34e-23 | 25 |
pro-T cell | 7.34e-23 | 25 |
CD4-positive, alpha-beta T cell | 9.28e-22 | 6 |
natural killer cell | 1.52e-16 | 3 |
pro-NK cell | 1.52e-16 | 3 |
CD8-positive, alpha-beta T cell | 1.30e-11 | 11 |
mesenchymal cell | 1.70e-08 | 354 |
connective tissue cell | 3.34e-08 | 361 |
naive T cell | 1.56e-07 | 3 |
lymphocyte of B lineage | 1.78e-07 | 24 |
pro-B cell | 1.78e-07 | 24 |
motile cell | 3.58e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 8.36e-08 | 371 |
hemolymphoid system | 2.48e-07 | 108 |
hematopoietic system | 3.59e-07 | 98 |
blood island | 3.59e-07 | 98 |