FFCP PHASE1:Hg19::chr17:46178692..46178711,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:46178692..46178711,-
|short_description=p2@CBX1
|description=CAGE_peak_2_at_CBX1_5end
|association_with_transcript=-28bp_to_ENST00000402583_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10951 | |EntrezGene=10951 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1551 | |HGNC=1551 | ||
|TSSclassifier=strong | |||
|UniProt=B5MD17 | |UniProt=B5MD17 | ||
|association_with_transcript=-28bp_to_ENST00000402583_5end | |||
|cluster_id=chr17:46178692..46178711,- | |||
|description=CAGE_peak_2_at_CBX1_5end | |||
|id=chr17:46178692..46178711,- | |||
|ontology_enrichment_celltype=CL:0002319!5.90e-08!25 | |||
|ontology_enrichment_celltype_v019=CL:0002319;8.53e-10;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.17e-09,25;CL:0000047,4.23e-07,8 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.91e-28!235;DOID:14566!6.42e-27!239;DOID:0050687!1.26e-19!143;DOID:305!9.58e-17!106;DOID:0050686!5.87e-16!137 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,8.39e-23,235;DOID:14566,2.48e-21,239;DOID:0050687,2.52e-16,143;DOID:305,1.13e-13,106;DOID:0050686,3.62e-13,137;DOID:3095,7.29e-07,22;DOID:2994,7.29e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0001017!2.49e-20!82;UBERON:0005743!2.88e-19!86;UBERON:0000073!3.03e-19!94;UBERON:0001016!3.03e-19!94;UBERON:0000955!1.17e-14!69;UBERON:0006238!1.17e-14!69;UBERON:0001049!9.26e-14!57;UBERON:0005068!9.26e-14!57;UBERON:0006241!9.26e-14!57;UBERON:0007135!9.26e-14!57;UBERON:0004121!5.31e-12!169;UBERON:0000924!6.72e-12!173;UBERON:0006601!6.72e-12!173;UBERON:0001893!9.73e-12!34;UBERON:0002020!1.21e-11!34;UBERON:0003528!1.21e-11!34;UBERON:0002791!1.69e-11!33;UBERON:0003080!3.25e-11!42;UBERON:0002780!4.38e-11!41;UBERON:0001890!4.38e-11!41;UBERON:0006240!4.38e-11!41;UBERON:0001869!4.61e-11!32;UBERON:0003075!6.69e-11!86;UBERON:0007284!6.69e-11!86;UBERON:0002616!9.34e-11!59;UBERON:0002346!1.24e-10!90;UBERON:0000956!1.11e-09!25;UBERON:0000203!1.11e-09!25;UBERON:0000153!2.90e-09!129;UBERON:0007811!2.90e-09!129;UBERON:0000033!5.20e-09!123;UBERON:0002619!6.34e-08!22;UBERON:0003056!8.84e-08!61;UBERON:0001950!4.12e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0002791;3.96e-11;32!UBERON:0003528;9.31e-11;34!UBERON:0002020;9.31e-11;34!UBERON:0001869;1.42e-10;32!UBERON:0001893;1.55e-10;34!UBERON:0000956;1.96e-10;25!UBERON:0000203;1.96e-10;25!UBERON:0002619;2.91e-08;22!UBERON:0002780;4.91e-08;41!UBERON:0001890;4.91e-08;41!UBERON:0000073;5.42e-08;53!UBERON:0002616;5.42e-08;53!UBERON:0001016;6.25e-08;83!UBERON:0001017;1.61e-07;75!UBERON:0000955;2.57e-07;68!UBERON:0001950;2.75e-07;20!UBERON:0000922;2.82e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.69e-22,89;UBERON:0001017,5.19e-22,81;UBERON:0000955,2.02e-15,68;UBERON:0006238,2.02e-15,68;UBERON:0001049,2.21e-15,56;UBERON:0005068,2.21e-15,56;UBERON:0006241,2.21e-15,56;UBERON:0007135,2.21e-15,56;UBERON:0000073,1.51e-13,53;UBERON:0002616,1.51e-13,53;UBERON:0011216,2.69e-13,223;UBERON:0001893,4.06e-13,34;UBERON:0003528,5.31e-13,34;UBERON:0002020,5.31e-13,34;UBERON:0002791,1.76e-12,32;UBERON:0001869,2.94e-12,32;UBERON:0002780,7.74e-12,41;UBERON:0001890,7.74e-12,41;UBERON:0003080,7.74e-12,41;UBERON:0006240,7.74e-12,41;UBERON:0003075,7.47e-11,82;UBERON:0007284,7.47e-11,82;UBERON:0000956,8.84e-11,25;UBERON:0000203,8.84e-11,25;UBERON:0002346,1.38e-10,86;UBERON:0004121,4.84e-10,171;UBERON:0000924,4.84e-10,171;UBERON:0006601,4.84e-10,171;UBERON:0010371,7.64e-09,104;UBERON:0003056,1.18e-08,61;UBERON:0002619,1.35e-08,22;UBERON:0001950,1.40e-07,20 | |||
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| ||
|short_description=p2@CBX1 | |||
}} | }} |
Latest revision as of 05:28, 25 September 2015
Short description: | p2@CBX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CBX1_5end |
Coexpression cluster: | NA |
Association with transcript: | -28bp_to_ENST00000402583_5end |
EntrezGene: | CBX1 |
HGNC: | 1551 |
UniProt: | B5MD17 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.17e-09 | 25 |
neuronal stem cell | 4.23e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.69e-22 | 89 |
central nervous system | 5.19e-22 | 81 |
brain | 2.02e-15 | 68 |
future brain | 2.02e-15 | 68 |
neural tube | 2.21e-15 | 56 |
neural rod | 2.21e-15 | 56 |
future spinal cord | 2.21e-15 | 56 |
neural keel | 2.21e-15 | 56 |
regional part of nervous system | 1.51e-13 | 53 |
regional part of brain | 1.51e-13 | 53 |
organ system subdivision | 2.69e-13 | 223 |
telencephalon | 4.06e-13 | 34 |
brain grey matter | 5.31e-13 | 34 |
gray matter | 5.31e-13 | 34 |
regional part of telencephalon | 1.76e-12 | 32 |
cerebral hemisphere | 2.94e-12 | 32 |
regional part of forebrain | 7.74e-12 | 41 |
forebrain | 7.74e-12 | 41 |
anterior neural tube | 7.74e-12 | 41 |
future forebrain | 7.74e-12 | 41 |
neural plate | 7.47e-11 | 82 |
presumptive neural plate | 7.47e-11 | 82 |
cerebral cortex | 8.84e-11 | 25 |
pallium | 8.84e-11 | 25 |
neurectoderm | 1.38e-10 | 86 |
ectoderm-derived structure | 4.84e-10 | 171 |
ectoderm | 4.84e-10 | 171 |
presumptive ectoderm | 4.84e-10 | 171 |
ecto-epithelium | 7.64e-09 | 104 |
pre-chordal neural plate | 1.18e-08 | 61 |
regional part of cerebral cortex | 1.35e-08 | 22 |
neocortex | 1.40e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
cancer | 8.39e-23 | 235 |
disease of cellular proliferation | 2.48e-21 | 239 |
cell type cancer | 2.52e-16 | 143 |
carcinoma | 1.13e-13 | 106 |
organ system cancer | 3.62e-13 | 137 |
germ cell and embryonal cancer | 7.29e-07 | 22 |
germ cell cancer | 7.29e-07 | 22 |