FFCP PHASE1:Hg19::chr17:46703240..46703257,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:46703240..46703257,-
|short_description=p6@HOXB9
|description=CAGE_peak_6_at_HOXB9_5end
|association_with_transcript=356bp_to_AK056123_5end
|EntrezGene=3...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3219 | |EntrezGene=3219 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=5120 | |HGNC=5120 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=356bp_to_AK056123_5end | |||
|cluster_id=chr17:46703240..46703257,- | |||
|description=CAGE_peak_6_at_HOXB9_5end | |||
|id=chr17:46703240..46703257,- | |||
|ontology_enrichment_celltype=CL:0000066!8.09e-22!254;CL:1000497!5.80e-09!18;CL:0002518!5.80e-09!18;CL:0000076!1.14e-07!62;CL:1000449!2.14e-07!16;CL:1000507!2.34e-07!12;CL:1000494!2.34e-07!12;CL:0000077!3.36e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:1000497;1.80e-11;17!CL:0002518;1.80e-11;17!CL:1000507;1.99e-09;10!CL:1000494;1.99e-09;10!CL:1000449;4.36e-08;15!CL:0002681;9.70e-08;12!CL:0002584;9.70e-08;12!CL:0000244;2.43e-07;4!CL:0000731;2.43e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.06e-12,253;CL:1000497,2.01e-11,17;CL:0002518,2.01e-11,17;CL:1000507,1.80e-09,10;CL:1000494,1.80e-09,10;CL:1000449,3.78e-08,15;CL:0002681,9.31e-08,12;CL:0002584,9.31e-08,12;CL:0000244,2.73e-07,4;CL:0000731,2.73e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0003918;3.04e-07;10!UBERON:0007687;3.04e-07;10!UBERON:0007297;6.50e-07;2 | |||
|ontology_enrichment_disease=DOID:14566!4.16e-34!239;DOID:162!7.00e-34!235;DOID:0050687!9.44e-30!143;DOID:305!8.65e-24!106;DOID:0050686!5.70e-09!137;DOID:1749!8.51e-09!14;DOID:0050615!5.05e-07!16 | |||
|ontology_enrichment_disease_v019=DOID:1749;5.94e-07;14!DOID:1909;9.19e-07;2!DOID:4929;9.19e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.12e-15,235;DOID:14566,4.16e-15,239;DOID:0050687,7.97e-14,143;DOID:305,4.54e-08,106;DOID:1909,5.34e-07,2;DOID:4929,7.15e-07,2;DOID:1749,9.74e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0001008!2.79e-17!45;UBERON:0006554!1.25e-16!44;UBERON:0000489!1.32e-15!32;UBERON:0002113!1.05e-12!27;UBERON:0003918!1.05e-12!27;UBERON:0005095!1.05e-12!27;UBERON:0007687!1.05e-12!27;UBERON:0003064!3.11e-11!37;UBERON:0000058!1.30e-10!26;UBERON:0005177!1.49e-09!107;UBERON:0002417!1.75e-09!61;UBERON:0000916!1.75e-09!61;UBERON:0000080!3.30e-09!18;UBERON:0002120!3.30e-09!18;UBERON:0004875!3.30e-09!18;UBERON:0005721!3.30e-09!18;UBERON:0005754!3.30e-09!18;UBERON:0007297!3.30e-09!18;UBERON:0006555!3.02e-08!17;UBERON:0005103!3.02e-08!17;UBERON:0000083!3.02e-08!17;UBERON:0009201!3.02e-08!17;UBERON:0004819!3.02e-08!17;UBERON:0006553!3.02e-08!17;UBERON:0003074!3.02e-08!17;UBERON:0003060!3.02e-08!17;UBERON:0001851!3.05e-08!16;UBERON:0004876!7.69e-08!20;UBERON:0005172!8.99e-08!55;UBERON:0005173!8.99e-08!55;UBERON:0003886!1.49e-07!63;UBERON:0004211!2.14e-07!16;UBERON:0001285!2.14e-07!16;UBERON:0007684!2.14e-07!16;UBERON:0003220!2.14e-07!16;UBERON:0004208!2.14e-07!16;UBERON:0009773!2.34e-07!12;UBERON:0001231!2.34e-07!12;UBERON:0004810!2.34e-07!12;UBERON:0003887!2.92e-07!21;UBERON:0009569!4.25e-07!113;UBERON:0000464!7.50e-07!104 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.18e-17;30!UBERON:0001008;1.18e-17;30!UBERON:0002113;7.15e-12;24!UBERON:0011143;7.15e-12;24!UBERON:0000489;2.89e-11;29!UBERON:0004175;7.77e-10;21!UBERON:0000365;1.29e-09;5!UBERON:0004211;1.99e-09;10!UBERON:0009773;1.99e-09;10!UBERON:0001231;1.99e-09;10!UBERON:0004810;1.99e-09;10!UBERON:0006947;2.80e-09;3!UBERON:0004054;2.80e-09;3!UBERON:0006555;4.36e-08;15!UBERON:0004819;4.36e-08;15!UBERON:0001285;4.36e-08;15!UBERON:0007684;4.36e-08;15!UBERON:0005910;5.25e-08;6!UBERON:0001225;9.70e-08;12!UBERON:0008987;9.70e-08;12!UBERON:0005904;4.78e-07;4!UBERON:0000058;5.46e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002113,1.74e-15,26;UBERON:0003918,1.74e-15,26;UBERON:0011143,1.74e-15,26;UBERON:0005095,1.74e-15,26;UBERON:0007687,1.74e-15,26;UBERON:0006554,6.21e-15,47;UBERON:0000489,1.32e-14,31;UBERON:0001008,1.59e-14,48;UBERON:0006555,6.99e-10,16;UBERON:0004819,6.99e-10,16;UBERON:0006947,9.82e-10,3;UBERON:0004054,9.82e-10,3;UBERON:0000365,1.25e-09,5;UBERON:0004810,1.80e-09,10;UBERON:0000058,1.54e-08,19;UBERON:0004211,3.78e-08,15;UBERON:0009773,3.78e-08,15;UBERON:0001231,3.78e-08,15;UBERON:0001285,3.78e-08,15;UBERON:0007684,3.78e-08,15;UBERON:0004208,3.78e-08,15;UBERON:0004175,4.41e-08,25;UBERON:0005910,5.11e-08,6;UBERON:0000080,8.09e-08,9;UBERON:0002120,8.09e-08,9;UBERON:0004875,8.09e-08,9;UBERON:0005721,8.09e-08,9;UBERON:0005754,8.09e-08,9;UBERON:0007297,8.09e-08,9;UBERON:0001225,9.31e-08,12;UBERON:0008987,9.31e-08,12;UBERON:0005904,2.21e-07,4 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0.446961094427288,0,0,0,0.522371256399677,0,0,0,0,0.37129905888014,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0.154816123316076,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0.775250277507987,1.06729878806013,1.33888245105868,0,1.52054421143703,0,0,1.62028389576352,0,0,0.112611480483322,1.53316637465883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0.140450806702248,0,0,0,0,0,0.910161361938026,1.43723628363248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.675105328965065,0.487185025805993,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0.354920400119532,0.337169380156203,0.241011029883482,0.55146986366197,0.435758888184812,0.237270619111097,0.134831308160164,0.588664395376038,1.53898862778556,0,0,0.4115740113314,0,0,0,0,0,0.860919069801795,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0.063497894292169,0.381988425558278,0,0,0,0.300343057843917,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79336230389644,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0.542530047399471,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306923946576125,0,0.256278298511402,0.511707249066704,0.965123526861645,0,0.154209693802656,0,0.0821271560138091,0,0,0.846016147141356,0.40101294060657,0.184161977871793,0,0,0,1.35359883872224,0.308061348417659,1.56869953835371,0,0.73886140225013,0,0.170093705276516,0.863663664408557,1.54227252690289,1.62567862526312,1.50506932156456,1.27438136522519,0.831076008928724,2.46262230194396,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0.255679882248303,0.0890320356467374,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0.196498082026242,0,0,0,0,0,0,0,0,0,0.0941438007767792,2.58303223602738,3.36942951335251,1.33029046061003,0.229723400206959,0,0,0,0,0,0,0,0,0.106824071127473,0,0.490080431962063,0,0,0,0.159426272728822,0,0,0.211673582723883,0,0,0,0,0,0.50787533340481,0,0,0,0,0,0,0,0,0,0,0.540911356951966,0,0,2.99424864653152,0,0.606802608747567,1.89453753271713,2.84136146806413,0,0,0,0,0,0,0,0,0,0.552567831062295,0,1.94310496754094,0,0,0.179736702294654,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.568967241427498,0,0.472775363535873,0,0.874813840149763,0,0,0,0,0,0,0,2.39664619741778,0.975966209950223,0.230850775511391,0.341826167541004,0.23056390438806,0,0,0,0,0,0,0,0,1.57916962432026,1.76456280885966,1.1747511088309,0.569261198172555,0,0.843992258112108,0.652931232636591,0.141353071433941,0.649165919226273,0,0,0,1.48260564340311,1.11207545051853,1.98401704060365,0,0,0,0,0.391329237864179,1.21390189767046,1.97292201424695,0,0,0,0.450970258243478,0.622129148383483,0,0,0.313932918407225,0,0,2.08012009519708,0,0,1.48000651186684,1.7472666824203,1.54787429224455,0,0,0,0,0,0,1.64450309576101,0,0,0.782205530939212,0.721429382263803,0,0.39961921916426,1.00863292007874,3.09248809647972,0.514784993585894,1.00838358591705,0.621262677827163,0.942776138467182,0.67952103036807,0.941425616810999,0.407992870545287,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0.984274815147488,0,0,0,0,0,0,0,0,0,0,3.30983970656632,2.7276385830199,0.950403028674658,0.179287339332845,3.83830394638891,0,0,0,0,0,0,0,0.410462603746695,0.511164065356265,1.35974509824151,0,0,0,0,0.684347351537318,0,0,0,0,0,0.395223263795889,0,0.638341257770182,0,0,0,0.327872630709804,1.88464915500281,0,0,0,0,0,0,0,0,2.12308764558307,1.99825733481477,0.470531639396343,0,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0.449803112163605,0,0,0,0,0,0.380805212168795,0.406870733204662,0,0.214821114084977,0,0,0,0,0,0,0.57785949122191,0.214441591374926,1.30497145982606,0.453411851024545,1.85217979459067,0.734210113519403,0.895444205407437,0.308801447160972,2.41212454536578,0.883445729729405,0.38582807654183,0,1.53744911152768,0.690860683462397,0.303859956177382,0,0,0,0,1.31043939538565,0,1.05656061679314,0,0,0,0,0,0,1.24415452006595,0,0,0.314531883711793,0,0,0,0.123935764259002,1.11728983594649,0,0,0,0,0,0,0,0,0,0,0,0,0,0.785181748008205,1.06172751012966,0.183428598521679,1.03973099535304,0,0.690359926060101,0.596748666348824,0,0.60511520611056,0,0,0,1.77427303460454,0,0,0,0,0,0,0,0.175871244359621,0.127762427639595,0,0,0,0,0,0.115233987555779,0,0,0,1.06374456795571,0.111231401892069,0.235479278551542,0,1.12108865325516,0,1.07963795609311,1.43325506366115,0,0.316027223465453,0.581207126840626,0.869291361512897,0,0,0,0,0,0.591660003652827,0.596493833314104,3.38709640152743,0,2.17144469965024,3.82215575590973,0,0.98150233615243,0.121917924982269,0,0.102662806856247,0,0.485710993059139,2.57333409808316,0.198950775161368,0.118920090777569,2.823652050974,0,2.8682940277668,0,0,0,0.245148321753905,3.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| ||
|short_description=p6@HOXB9 | |||
}} | }} |
Latest revision as of 07:36, 25 September 2015
Short description: | p6@HOXB9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_HOXB9_5end |
Coexpression cluster: | NA |
Association with transcript: | 356bp_to_AK056123_5end |
EntrezGene: | HOXB9 |
HGNC: | 5120 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.06e-12 | 253 |
kidney cell | 2.01e-11 | 17 |
kidney epithelial cell | 2.01e-11 | 17 |
kidney tubule cell | 1.80e-09 | 10 |
nephron tubule epithelial cell | 1.80e-09 | 10 |
epithelial cell of nephron | 3.78e-08 | 15 |
kidney cortical cell | 9.31e-08 | 12 |
renal cortical epithelial cell | 9.31e-08 | 12 |
transitional epithelial cell | 2.73e-07 | 4 |
urothelial cell | 2.73e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
kidney | 1.74e-15 | 26 |
kidney mesenchyme | 1.74e-15 | 26 |
upper urinary tract | 1.74e-15 | 26 |
kidney rudiment | 1.74e-15 | 26 |
kidney field | 1.74e-15 | 26 |
urinary system structure | 6.21e-15 | 47 |
cavitated compound organ | 1.32e-14 | 31 |
renal system | 1.59e-14 | 48 |
excretory tube | 6.99e-10 | 16 |
kidney epithelium | 6.99e-10 | 16 |
male genital duct | 9.82e-10 | 3 |
internal male genitalia | 9.82e-10 | 3 |
urothelium | 1.25e-09 | 5 |
nephron tubule epithelium | 1.80e-09 | 10 |
duct | 1.54e-08 | 19 |
nephron epithelium | 3.78e-08 | 15 |
renal tubule | 3.78e-08 | 15 |
nephron tubule | 3.78e-08 | 15 |
nephron | 3.78e-08 | 15 |
uriniferous tubule | 3.78e-08 | 15 |
nephrogenic mesenchyme | 3.78e-08 | 15 |
internal genitalia | 4.41e-08 | 25 |
transitional epithelium | 5.11e-08 | 6 |
mesonephros | 8.09e-08 | 9 |
pronephros | 8.09e-08 | 9 |
nephrogenic cord | 8.09e-08 | 9 |
pronephric mesoderm | 8.09e-08 | 9 |
rostral part of nephrogenic cord | 8.09e-08 | 9 |
presumptive pronephric mesoderm | 8.09e-08 | 9 |
cortex of kidney | 9.31e-08 | 12 |
renal parenchyma | 9.31e-08 | 12 |
duct of male reproductive system | 2.21e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.12e-15 | 235 |
disease of cellular proliferation | 4.16e-15 | 239 |
cell type cancer | 7.97e-14 | 143 |
carcinoma | 4.54e-08 | 106 |
melanoma | 5.34e-07 | 2 |
tubular adenocarcinoma | 7.15e-07 | 2 |
squamous cell carcinoma | 9.74e-07 | 14 |