FFCP PHASE1:Hg19::chr3:46539460..46539483,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=83597 | |EntrezGene=83597 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15572 | |HGNC=15572 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BQQ7 | |UniProt=Q9BQQ7 | ||
|association_with_transcript=-1bp_to_NM_031440,uc003cps.1_5end | |association_with_transcript=-1bp_to_NM_031440,uc003cps.1_5end | ||
|cluster_id=chr3:46539460..46539483,+ | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_1_at_RTP3_5end | |description=CAGE_peak_1_at_RTP3_5end | ||
|id=chr3:46539460..46539483,+ | |id=chr3:46539460..46539483,+ | ||
|ontology_enrichment_celltype=CL:0000181!9.40e-13!12;CL:0000417!9.40e-13!12;CL:0000668!9.40e-13!12;CL:0000414!9.40e-13!12;CL:0000412!9.40e-13!12;CL:0000182!9.40e-13!12 | |ontology_enrichment_celltype=CL:0000181!9.40e-13!12;CL:0000417!9.40e-13!12;CL:0000668!9.40e-13!12;CL:0000414!9.40e-13!12;CL:0000412!9.40e-13!12;CL:0000182!9.40e-13!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;5.72e-38;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,6.00e-38,12;CL:0000223,2.72e-08,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;3.22e-11;11!UBERON:0009497;1.21e-09;13 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!3.10e-12!19;UBERON:0006925!3.10e-12!19;UBERON:0008836!3.10e-12!19;UBERON:0008835!1.52e-10!22;UBERON:0003894!1.52e-10!22;UBERON:0002146!1.73e-10!1;UBERON:0005623!1.73e-10!1;UBERON:0009854!4.44e-10!23;UBERON:0005172!1.08e-09!55;UBERON:0005173!1.08e-09!55;UBERON:0007499!2.93e-09!25;UBERON:0009497!2.93e-09!25;UBERON:0000015!2.93e-09!25;UBERON:0002423!2.93e-09!25;UBERON:0006235!2.93e-09!25;UBERON:0004161!2.93e-09!25;UBERON:0005057!6.77e-09!26;UBERON:0009856!6.77e-09!26;UBERON:0002417!1.23e-08!61;UBERON:0000916!1.23e-08!61;UBERON:0002365!1.98e-07!31;UBERON:0002330!1.98e-07!31 | |ontology_enrichment_uberon=UBERON:0002107!3.10e-12!19;UBERON:0006925!3.10e-12!19;UBERON:0008836!3.10e-12!19;UBERON:0008835!1.52e-10!22;UBERON:0003894!1.52e-10!22;UBERON:0002146!1.73e-10!1;UBERON:0005623!1.73e-10!1;UBERON:0009854!4.44e-10!23;UBERON:0005172!1.08e-09!55;UBERON:0005173!1.08e-09!55;UBERON:0007499!2.93e-09!25;UBERON:0009497!2.93e-09!25;UBERON:0000015!2.93e-09!25;UBERON:0002423!2.93e-09!25;UBERON:0006235!2.93e-09!25;UBERON:0004161!2.93e-09!25;UBERON:0005057!6.77e-09!26;UBERON:0009856!6.77e-09!26;UBERON:0002417!1.23e-08!61;UBERON:0000916!1.23e-08!61;UBERON:0002365!1.98e-07!31;UBERON:0002330!1.98e-07!31 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;2.59e-37;19!UBERON:0006925;2.59e-37;19!UBERON:0002423;1.70e-28;25!UBERON:0002365;7.79e-24;31!UBERON:0002330;7.79e-24;31!UBERON:0002368;1.89e-19;33!UBERON:0000949;2.00e-15;43!UBERON:0005172;3.80e-11;52!UBERON:0005173;3.80e-11;52!UBERON:0002417;1.09e-08;58!UBERON:0000916;1.09e-08;58!UBERON:0002530;5.78e-08;57!UBERON:0001007;7.38e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.79e-37,19;UBERON:0006925,2.79e-37,19;UBERON:0008836,2.79e-37,19;UBERON:0008835,2.81e-32,22;UBERON:0003894,2.81e-32,22;UBERON:0009854,6.72e-31,23;UBERON:0007499,1.80e-28,25;UBERON:0009497,1.80e-28,25;UBERON:0000015,1.80e-28,25;UBERON:0002423,1.80e-28,25;UBERON:0006235,1.80e-28,25;UBERON:0004161,1.80e-28,25;UBERON:0009856,2.13e-27,26;UBERON:0002365,4.61e-23,31;UBERON:0002330,4.61e-23,31;UBERON:0002368,1.75e-20,35;UBERON:0000949,4.99e-16,45;UBERON:0003929,2.01e-13,54;UBERON:0005172,2.01e-13,54;UBERON:0005173,2.01e-13,54;UBERON:0002530,2.58e-12,59;UBERON:0002417,4.08e-12,60;UBERON:0000916,4.08e-12,60;UBERON:0005911,6.01e-09,82;UBERON:0001041,1.90e-08,87;UBERON:0005177,2.61e-07,101 | |||
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|short_description=p1@RTP3 | |short_description=p1@RTP3 | ||
}} | }} |
Latest revision as of 11:25, 18 September 2015
Short description: | p1@RTP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RTP3_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -1bp_to_NM_031440, uc003cps.1_5end |
EntrezGene: | RTP3 |
HGNC: | 15572 |
UniProt: | Q9BQQ7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 6.00e-38 | 12 |
endodermal cell | 2.72e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 2.79e-37 | 19 |
digestive gland | 2.79e-37 | 19 |
liver bud | 2.79e-37 | 19 |
hepatic diverticulum | 2.81e-32 | 22 |
liver primordium | 2.81e-32 | 22 |
digestive tract diverticulum | 6.72e-31 | 23 |
epithelial sac | 1.80e-28 | 25 |
epithelium of foregut-midgut junction | 1.80e-28 | 25 |
anatomical boundary | 1.80e-28 | 25 |
hepatobiliary system | 1.80e-28 | 25 |
foregut-midgut junction | 1.80e-28 | 25 |
septum transversum | 1.80e-28 | 25 |
sac | 2.13e-27 | 26 |
exocrine gland | 4.61e-23 | 31 |
exocrine system | 4.61e-23 | 31 |
endocrine gland | 1.75e-20 | 35 |
endocrine system | 4.99e-16 | 45 |
gut epithelium | 2.01e-13 | 54 |
abdomen element | 2.01e-13 | 54 |
abdominal segment element | 2.01e-13 | 54 |
gland | 2.58e-12 | 59 |
abdominal segment of trunk | 4.08e-12 | 60 |
abdomen | 4.08e-12 | 60 |
endo-epithelium | 6.01e-09 | 82 |
foregut | 1.90e-08 | 87 |
trunk region element | 2.61e-07 | 101 |