FFCP PHASE1:Hg19::chr1:152572708..152572714,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=353144 | |EntrezGene=353144 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16612 | |HGNC=16612 | ||
|TSSclassifier=strong | |||
|UniProt=Q5T5A8 | |UniProt=Q5T5A8 | ||
|association_with_transcript=-423bp_to_ENST00000333881,NM_178434,uc001fac.2_5end | |association_with_transcript=-423bp_to_ENST00000333881,NM_178434,uc001fac.2_5end | ||
|cluster_id=chr1:152572708..152572714,+ | |||
|coexpression_cluster_id=C441 | |coexpression_cluster_id=C441 | ||
|description=CAGE_peak_1_at_LCE3C_5end | |description=CAGE_peak_1_at_LCE3C_5end | ||
|id=chr1:152572708..152572714,+ | |id=chr1:152572708..152572714,+ | ||
|ontology_enrichment_celltype=CL:0000312!5.03e-17!5;CL:0000240!2.33e-14!6;CL:0000311!2.33e-14!6;CL:0000079!2.33e-14!6;CL:0000237!2.33e-14!6;CL:0000036!2.33e-14!6;CL:0000357!2.33e-14!6;CL:0000114!2.33e-14!6;CL:0000362!5.15e-11!8;CL:0002328!7.26e-08!3;CL:0002159!4.00e-07!13 | |ontology_enrichment_celltype=CL:0000312!5.03e-17!5;CL:0000240!2.33e-14!6;CL:0000311!2.33e-14!6;CL:0000079!2.33e-14!6;CL:0000237!2.33e-14!6;CL:0000036!2.33e-14!6;CL:0000357!2.33e-14!6;CL:0000114!2.33e-14!6;CL:0000362!5.15e-11!8;CL:0002328!7.26e-08!3;CL:0002159!4.00e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0000312;1.70e-32;5!CL:0000240;2.72e-27;6!CL:0000311;2.72e-27;6!CL:0000079;2.72e-27;6!CL:0000237;2.72e-27;6!CL:0000362;1.35e-18;9!CL:0002159;2.37e-12;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000312,1.70e-32,5;CL:0000240,2.72e-27,6;CL:0000311,2.72e-27,6;CL:0000079,2.72e-27,6;CL:0000237,2.72e-27,6;CL:0000036,2.72e-27,6;CL:0000357,2.72e-27,6;CL:0000114,2.72e-27,6;CL:0000362,1.35e-18,9;CL:0002159,2.37e-12,14 | |||
|ontology_enrichment_development_v019=CL:0000357;2.72e-27;6!CL:0000114;2.72e-27;6!UBERON:0008814;6.96e-21;2!UBERON:0010056;6.96e-21;2 | |||
|ontology_enrichment_disease=DOID:3151!1.53e-21!1;DOID:3149!1.53e-21!1;DOID:3451!1.82e-11!2;DOID:4159!1.82e-11!2;DOID:0060122!1.82e-11!2 | |ontology_enrichment_disease=DOID:3151!1.53e-21!1;DOID:3149!1.53e-21!1;DOID:3451!1.82e-11!2;DOID:4159!1.82e-11!2;DOID:0060122!1.82e-11!2 | ||
|ontology_enrichment_disease_v019=DOID:3151;6.62e-41;1!DOID:3149;6.62e-41;1!DOID:3451;3.11e-21;2!DOID:4159;3.11e-21;2!DOID:0060122;3.11e-21;2!DOID:4362;2.97e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,6.62e-41,1;DOID:3149,6.62e-41,1;DOID:3451,3.11e-21,2;DOID:4159,3.11e-21,2;DOID:0060122,3.11e-21,2;DOID:4362,2.97e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0002372!7.72e-21!1;UBERON:0001961!7.72e-21!1;UBERON:0001744!7.72e-21!1;UBERON:0001735!7.72e-21!1;UBERON:0001042!2.62e-18!10;UBERON:0009145!2.62e-18!10;UBERON:0006562!1.03e-16!11;UBERON:0001557!5.87e-10!19;UBERON:0001723!5.93e-08!3;UBERON:0001033!5.93e-08!3;UBERON:0010056!5.93e-08!3;UBERON:0004815!7.26e-08!3;UBERON:0002031!7.26e-08!3;UBERON:0000072!3.47e-07!46 | |ontology_enrichment_uberon=UBERON:0002372!7.72e-21!1;UBERON:0001961!7.72e-21!1;UBERON:0001744!7.72e-21!1;UBERON:0001735!7.72e-21!1;UBERON:0001042!2.62e-18!10;UBERON:0009145!2.62e-18!10;UBERON:0006562!1.03e-16!11;UBERON:0001557!5.87e-10!19;UBERON:0001723!5.93e-08!3;UBERON:0001033!5.93e-08!3;UBERON:0010056!5.93e-08!3;UBERON:0004815!7.26e-08!3;UBERON:0002031!7.26e-08!3;UBERON:0000072!3.47e-07!46 | ||
|ontology_enrichment_uberon_v019=UBERON:0001723;2.09e-14;3!UBERON:0001033;2.09e-14;3!UBERON:0001003;1.34e-11;15!UBERON:0007376;1.34e-11;15!UBERON:0000014;2.53e-11;4!UBERON:0002199;3.70e-10;46!UBERON:0002416;3.70e-10;46!UBERON:0002097;1.75e-08;41!UBERON:0000002;6.34e-08;6!UBERON:0001560;6.34e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001723,2.09e-14,3;UBERON:0001033,2.09e-14,3;UBERON:0010056,2.09e-14,3;UBERON:0001003,1.34e-11,15;UBERON:0007376,1.34e-11,15;UBERON:0007383,1.34e-11,15;UBERON:0000014,2.53e-11,4;UBERON:0002097,1.56e-09,41;UBERON:0002199,1.40e-08,46;UBERON:0002416,1.40e-08,46;UBERON:0000002,6.34e-08,6;UBERON:0001560,6.34e-08,6;UBERON:0003102,4.69e-07,99 | |||
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|short_description=p1@LCE3C | |short_description=p1@LCE3C | ||
}} | }} |
Latest revision as of 03:38, 17 September 2015
Short description: | p1@LCE3C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LCE3C_5end |
Coexpression cluster: | C441_keratoacanthoma_skin_tongue_esophagus_cervical_salivary_Sebocyte |
Association with transcript: | -423bp_to_ENST00000333881, NM_178434, uc001fac.2_5end |
EntrezGene: | LCE3C |
HGNC: | 16612 |
UniProt: | Q5T5A8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
keratinocyte | 1.70e-32 | 5 |
stratified squamous epithelial cell | 2.72e-27 | 6 |
keratin accumulating cell | 2.72e-27 | 6 |
stratified epithelial cell | 2.72e-27 | 6 |
keratinizing barrier epithelial cell | 2.72e-27 | 6 |
epithelial fate stem cell | 2.72e-27 | 6 |
stratified epithelial stem cell | 2.72e-27 | 6 |
surface ectodermal cell | 2.72e-27 | 6 |
epidermal cell | 1.35e-18 | 9 |
general ecto-epithelial cell | 2.37e-12 | 14 |
Ontology term | p-value | n |
---|---|---|
tongue | 2.09e-14 | 3 |
gustatory system | 2.09e-14 | 3 |
future tongue | 2.09e-14 | 3 |
skin epidermis | 1.34e-11 | 15 |
outer epithelium | 1.34e-11 | 15 |
enveloping layer of ectoderm | 1.34e-11 | 15 |
zone of skin | 2.53e-11 | 4 |
skin of body | 1.56e-09 | 41 |
integument | 1.40e-08 | 46 |
integumental system | 1.40e-08 | 46 |
uterine cervix | 6.34e-08 | 6 |
neck of organ | 6.34e-08 | 6 |
surface structure | 4.69e-07 | 99 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 6.62e-41 | 1 |
keratoacanthoma | 6.62e-41 | 1 |
skin carcinoma | 3.11e-21 | 2 |
skin cancer | 3.11e-21 | 2 |
integumentary system cancer | 3.11e-21 | 2 |
cervical cancer | 2.97e-09 | 5 |