FFCP PHASE1:Hg19::chr2:162276951..162276955,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:162276951..162276955,+ | |||
|coexpression_cluster_id=C1619 | |coexpression_cluster_id=C1619 | ||
|description=CAGE_peak_at_chr2:162276951..162276955,+ | |description=CAGE_peak_at_chr2:162276951..162276955,+ | ||
|id=chr2:162276951..162276955,+ | |id=chr2:162276951..162276955,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000047;2.90e-12;2!CL:0002319;5.24e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,7.68e-12,8;CL:0002319,5.64e-08,25 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0002021;4.97e-40;5!UBERON:0001950;2.67e-26;20!UBERON:0002619;4.81e-24;22!UBERON:0000956;2.62e-21;25!UBERON:0000203;2.62e-21;25!UBERON:0002791;9.20e-16;32!UBERON:0001869;1.80e-15;32!UBERON:0003528;1.02e-13;34!UBERON:0002020;1.02e-13;34!UBERON:0001893;1.50e-13;34!UBERON:0002780;5.70e-11;41!UBERON:0001890;5.70e-11;41!UBERON:0001016;2.83e-09;83!UBERON:0001017;7.73e-08;75!UBERON:0000073;3.83e-07;53!UBERON:0002616;3.83e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,4.35e-40,5;UBERON:0001950,2.22e-26,20;UBERON:0002619,4.07e-24,22;UBERON:0000956,2.26e-21,25;UBERON:0000203,2.26e-21,25;UBERON:0002791,6.71e-17,32;UBERON:0001869,6.71e-17,32;UBERON:0001017,8.89e-17,81;UBERON:0003528,5.99e-16,34;UBERON:0002020,5.99e-16,34;UBERON:0001893,5.99e-16,34;UBERON:0001016,4.02e-15,89;UBERON:0002780,2.50e-13,41;UBERON:0001890,2.50e-13,41;UBERON:0003080,2.50e-13,41;UBERON:0006240,2.50e-13,41;UBERON:0000955,2.15e-11,68;UBERON:0006238,2.15e-11,68;UBERON:0000073,2.08e-10,53;UBERON:0002616,2.08e-10,53;UBERON:0001049,7.23e-10,56;UBERON:0005068,7.23e-10,56;UBERON:0006241,7.23e-10,56;UBERON:0007135,7.23e-10,56;UBERON:0003056,4.40e-09,61;UBERON:0004121,7.12e-08,171;UBERON:0000924,7.12e-08,171;UBERON:0006601,7.12e-08,171;UBERON:0003075,8.29e-07,82;UBERON:0007284,8.29e-07,82 | |||
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| ||
|short_description=p@chr2:162276951..162276955,+ | |short_description=p@chr2:162276951..162276955,+ | ||
}} | }} |
Latest revision as of 01:54, 29 July 2015
Short description: | p@chr2:162276951..162276955, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:162276951..162276955, + |
Coexpression cluster: | C1619_medulloblastoma_occipital_duodenum_Neural_parietal_temporal_Neurons |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 7.68e-12 | 8 |
neural cell | 5.64e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
occipital lobe | 4.35e-40 | 5 |
neocortex | 2.22e-26 | 20 |
regional part of cerebral cortex | 4.07e-24 | 22 |
cerebral cortex | 2.26e-21 | 25 |
pallium | 2.26e-21 | 25 |
regional part of telencephalon | 6.71e-17 | 32 |
cerebral hemisphere | 6.71e-17 | 32 |
central nervous system | 8.89e-17 | 81 |
brain grey matter | 5.99e-16 | 34 |
gray matter | 5.99e-16 | 34 |
telencephalon | 5.99e-16 | 34 |
nervous system | 4.02e-15 | 89 |
regional part of forebrain | 2.50e-13 | 41 |
forebrain | 2.50e-13 | 41 |
anterior neural tube | 2.50e-13 | 41 |
future forebrain | 2.50e-13 | 41 |
brain | 2.15e-11 | 68 |
future brain | 2.15e-11 | 68 |
regional part of nervous system | 2.08e-10 | 53 |
regional part of brain | 2.08e-10 | 53 |
neural tube | 7.23e-10 | 56 |
neural rod | 7.23e-10 | 56 |
future spinal cord | 7.23e-10 | 56 |
neural keel | 7.23e-10 | 56 |
pre-chordal neural plate | 4.40e-09 | 61 |
ectoderm-derived structure | 7.12e-08 | 171 |
ectoderm | 7.12e-08 | 171 |
presumptive ectoderm | 7.12e-08 | 171 |
neural plate | 8.29e-07 | 82 |
presumptive neural plate | 8.29e-07 | 82 |