FFCP PHASE1:Hg19::chr19:18426858..18426889,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:18426858..18426889,-
|short_description=p4@LSM4
|description=CAGE_peak_4_at_LSM4_5end
|association_with_transcript=0bp_to_AB463842,EU832676,EU832756_5end
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=25804 | |EntrezGene=25804 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17259 | |HGNC=17259 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_AB463842,EU832676,EU832756_5end | |||
|cluster_id=chr19:18426858..18426889,- | |||
|coexpression_cluster_id=C64 | |||
|description=CAGE_peak_4_at_LSM4_5end | |||
|id=chr19:18426858..18426889,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000097;8.75e-45;5!CL:0000163;6.96e-25;9!CL:0002553;7.88e-10;1!CL:0000763;3.20e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,1.00e-44,5;CL:0002028,1.00e-44,5;CL:0000163,7.50e-25,9;CL:0000763,2.10e-13,108;CL:0000049,2.10e-13,108;CL:0002553,5.79e-10,1;CL:0002032,1.40e-09,161;CL:0000837,1.40e-09,161;CL:0000037,4.49e-09,168;CL:0000988,1.75e-08,177 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:8692;2.32e-20;31!DOID:1240;3.21e-16;39!DOID:2531;1.05e-10;51!DOID:0060083;1.05e-10;51!DOID:1036;3.28e-10;8!DOID:8552;4.44e-10;1!DOID:5093;1.31e-09;4!DOID:1612;1.31e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,1.99e-21,31;DOID:1240,1.21e-20,39;DOID:2531,1.96e-15,51;DOID:0060083,1.96e-15,51;DOID:8552,4.06e-10,1;DOID:1036,4.37e-10,8;DOID:5093,1.17e-09,4;DOID:1612,1.17e-09,4;DOID:0050686,2.16e-08,137 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p4@LSM4 | |||
}} | }} |
Latest revision as of 15:34, 16 September 2015
Short description: | p4@LSM4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LSM4_5end |
Coexpression cluster: | C64_Mast_chronic_acute_immature_chorionic_Basophils_Dendritic |
Association with transcript: | 0bp_to_AB463842, EU832676, EU832756_5end |
EntrezGene: | LSM4 |
HGNC: | 17259 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 1.00e-44 | 5 |
basophil mast progenitor cell | 1.00e-44 | 5 |
endocrine cell | 7.50e-25 | 9 |
myeloid cell | 2.10e-13 | 108 |
common myeloid progenitor | 2.10e-13 | 108 |
lung fibroblast | 5.79e-10 | 1 |
hematopoietic oligopotent progenitor cell | 1.40e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.40e-09 | 161 |
hematopoietic stem cell | 4.49e-09 | 168 |
hematopoietic cell | 1.75e-08 | 177 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 1.99e-21 | 31 |
leukemia | 1.21e-20 | 39 |
hematologic cancer | 1.96e-15 | 51 |
immune system cancer | 1.96e-15 | 51 |
chronic myeloid leukemia | 4.06e-10 | 1 |
chronic leukemia | 4.37e-10 | 8 |
thoracic cancer | 1.17e-09 | 4 |
breast cancer | 1.17e-09 | 4 |
organ system cancer | 2.16e-08 | 137 |