FFCP PHASE1:Hg19::chr3:383640..383650,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:383640..383650,+ | |||
|coexpression_cluster_id=C552 | |coexpression_cluster_id=C552 | ||
|description=CAGE_peak_at_chr3:383640..383650,+ | |description=CAGE_peak_at_chr3:383640..383650,+ | ||
|id=chr3:383640..383650,+ | |id=chr3:383640..383650,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1909!4.07e-08!2;DOID:114!4.37e-08!2 | |ontology_enrichment_disease=DOID:1909!4.07e-08!2;DOID:114!4.37e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:4556;1.09e-10;3!DOID:3908;6.39e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:4556,1.09e-10,3;DOID:3908,6.39e-07,5 | |||
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| ||
|short_description=p@chr3:383640..383650,+ | |short_description=p@chr3:383640..383650,+ | ||
}} | }} |
Latest revision as of 20:46, 29 July 2015
Short description: | p@chr3:383640..383650, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:383640..383650, + |
Coexpression cluster: | C552_medial_temporal_occipital_parietal_duodenum_brain_spinal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neocortex | 4.41e-22 | 20 |
regional part of cerebral cortex | 3.23e-20 | 22 |
cerebral cortex | 5.90e-18 | 25 |
pallium | 5.90e-18 | 25 |
temporal lobe | 2.90e-17 | 6 |
middle temporal gyrus | 1.15e-15 | 2 |
regional part of telencephalon | 2.87e-14 | 32 |
cerebral hemisphere | 2.87e-14 | 32 |
brain grey matter | 1.75e-13 | 34 |
gray matter | 1.75e-13 | 34 |
telencephalon | 1.75e-13 | 34 |
regional part of forebrain | 2.53e-11 | 41 |
forebrain | 2.53e-11 | 41 |
anterior neural tube | 2.53e-11 | 41 |
future forebrain | 2.53e-11 | 41 |
duodenum | 7.42e-11 | 2 |
brain | 1.89e-10 | 68 |
future brain | 1.89e-10 | 68 |
regional part of nervous system | 6.55e-09 | 53 |
regional part of brain | 6.55e-09 | 53 |
central nervous system | 7.39e-09 | 81 |
neural tube | 1.83e-08 | 56 |
neural rod | 1.83e-08 | 56 |
future spinal cord | 1.83e-08 | 56 |
neural keel | 1.83e-08 | 56 |
nervous system | 5.13e-08 | 89 |
pre-chordal neural plate | 8.15e-08 | 61 |
small intestine | 5.08e-07 | 4 |
occipital lobe | 5.38e-07 | 5 |
parietal lobe | 6.04e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
lung large cell carcinoma | 1.09e-10 | 3 |
non-small cell lung carcinoma | 6.39e-07 | 5 |