FFCP PHASE1:Hg19::chr6:105405517..105405559,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=389421 | |EntrezGene=389421 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=32207 | |HGNC=32207 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-414bp_to_uc010kda.1_5end | |association_with_transcript=-414bp_to_uc010kda.1_5end | ||
|cluster_id=chr6:105405517..105405559,+ | |||
|coexpression_cluster_id=C4539 | |coexpression_cluster_id=C4539 | ||
|description=CAGE_peak_1_at_LIN28B_5end | |description=CAGE_peak_1_at_LIN28B_5end | ||
|id=chr6:105405517..105405559,+ | |id=chr6:105405517..105405559,+ | ||
|ontology_enrichment_celltype=CL:0002322!4.01e-13!5 | |ontology_enrichment_celltype=CL:0002322!4.01e-13!5 | ||
|ontology_enrichment_celltype_v019=CL:0002322;4.26e-21;5!CL:0002321;2.51e-12;15!CL:0000039;3.36e-09;7!CL:0000586;3.36e-09;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,4.10e-21,5;CL:0000039,3.15e-09,7;CL:0000586,3.15e-09,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.05e-09;10!UBERON:0005564;1.05e-09;10!UBERON:0003104;6.58e-07;31 | |||
|ontology_enrichment_disease=DOID:14566!7.03e-19!239;DOID:162!7.62e-18!235;DOID:3095!1.16e-14!22;DOID:2994!1.16e-14!22;DOID:0050687!1.60e-11!143;DOID:171!9.03e-10!10;DOID:169!7.38e-09!6;DOID:2531!1.20e-08!51;DOID:0060083!1.20e-08!51;DOID:1240!2.89e-08!39;DOID:1036!1.05e-07!8;DOID:8692!7.07e-07!31;DOID:0050686!7.47e-07!137 | |ontology_enrichment_disease=DOID:14566!7.03e-19!239;DOID:162!7.62e-18!235;DOID:3095!1.16e-14!22;DOID:2994!1.16e-14!22;DOID:0050687!1.60e-11!143;DOID:171!9.03e-10!10;DOID:169!7.38e-09!6;DOID:2531!1.20e-08!51;DOID:0060083!1.20e-08!51;DOID:1240!2.89e-08!39;DOID:1036!1.05e-07!8;DOID:8692!7.07e-07!31;DOID:0050686!7.47e-07!137 | ||
|ontology_enrichment_disease_v019=DOID:3095;2.03e-15;22!DOID:2994;2.03e-15;22!DOID:1036;1.26e-12;8!DOID:8692;1.73e-08;31!DOID:74;1.88e-08;2!DOID:1240;5.12e-08;39!DOID:2531;1.52e-07;51!DOID:0060083;1.52e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.86e-15,22;DOID:2994,1.86e-15,22;DOID:1036,1.34e-12,8;DOID:162,1.31e-10,235;DOID:14566,3.13e-10,239;DOID:2531,6.86e-10,51;DOID:0060083,6.86e-10,51;DOID:1240,8.73e-10,39;DOID:8692,1.08e-08,31;DOID:74,1.71e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0000010!6.21e-08!8;UBERON:0000013!3.29e-07!5;UBERON:0002410!3.29e-07!5 | |ontology_enrichment_uberon=UBERON:0000010!6.21e-08!8;UBERON:0000013!3.29e-07!5;UBERON:0002410!3.29e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0000922;2.66e-10;49!UBERON:0000473;4.72e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,4.47e-08,8 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,29.2736894711029,38.4336328132307,28.0027402315539,20.5248888930433,29.7738604033242,24.4534830580806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93375119346596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.23437948524618,0,1.22520107990516,0,0,1.06712765022621,0,0,0,0,2.59697552219644,0,0.684704037099577,0,5.01268954180134,0,0,0.80719882876419,0,0,0,0,0,0,6.40334199959057,0,1.35227839237992,3.66379164797602,0,0,0,0.242721043499027,0.222886768554957,0,0,0,0,0,0,0,0,17.1011580583675,0,0,0,0,1.96935688737711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.689486746482929,1.16641845353302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.06579894587209,0,0,19.1756311524604,17.0574404856433,21.8168063068596,38.1405002775612,0,0,0,2.12029607150911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.443985040371,4.35490403868438,1.32930774541437,0,2.19753042885058,3.58417289318877,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0.561111741760736,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.65983798109815,5.43603957919843,6.84051624563682,7.34698628010615,0,5.33441992014442,0,0,16.2360679949669,20.9059943627795,20.3565765634301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36869470307464,0,0,0.157204305099666,0,0,0.395223263795889,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0.276697269872462,0.999843263696853,0.606596470166591,0.570930667089935,0,0.936669811613763,0.724605143054126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39997479170986,1.49368421571797,0,0,0,0,0,1.79052119825112,0.970423302570136,0.314531883711793,2.29340240203229,1.01839517972415,1.70059936081346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535701835878287,0.672567444437648,0,0.227662191351298,0,1.15233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,1.51113852978563,2.26015753993353,0,0,0,0,0,0.236664001461131,0.426067023795788,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0.356760272332706,0.11294608203896,0,0.150962843566674,0,0,0,0,0.471353094203252,0,0,0,0,0,0,1.29923502702408,0,0,0,0,0,0,0,0,0,0,0,0,0,8.32698403911521,8.19491789727716,0,6.52728510348683,34.2038278739917,2.57305718697566,3.76061308938563,0,0,0,0,0,0,0,0.31037357147929,0,0,0,0,0,0,0,0,0.162806537221949,0.640364075266293,0,0,0,0,0,0,0,0 | ||
|short_description=p1@LIN28B | |short_description=p1@LIN28B | ||
}} | }} |
Latest revision as of 13:56, 19 September 2015
Short description: | p1@LIN28B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LIN28B_5end |
Coexpression cluster: | C4539_H9_chronic_testicular_HES3GFP_iPS_embryonic_anaplastic |
Association with transcript: | -414bp_to_uc010kda.1_5end |
EntrezGene: | LIN28B |
HGNC: | 32207 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 4.10e-21 | 5 |
germ line cell | 3.15e-09 | 7 |
germ cell | 3.15e-09 | 7 |
Ontology term | p-value | n |
---|---|---|
testis | 4.47e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.86e-15 | 22 |
germ cell cancer | 1.86e-15 | 22 |
chronic leukemia | 1.34e-12 | 8 |
cancer | 1.31e-10 | 235 |
disease of cellular proliferation | 3.13e-10 | 239 |
hematologic cancer | 6.86e-10 | 51 |
immune system cancer | 6.86e-10 | 51 |
leukemia | 8.73e-10 | 39 |
myeloid leukemia | 1.08e-08 | 31 |
hematopoietic system disease | 1.71e-08 | 2 |