FFCP PHASE1:Hg19::chr6:31540695..31540713,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4049 | |EntrezGene=4049 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=6709 | |HGNC=6709 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc003nuf.2,uc003nug.2,uc003nuh.2,uc010jsr.2_5end | |association_with_transcript=0bp_to_uc003nuf.2,uc003nug.2,uc003nuh.2,uc010jsr.2_5end | ||
|cluster_id=chr6:31540695..31540713,+ | |||
|coexpression_cluster_id=C21 | |coexpression_cluster_id=C21 | ||
|description=CAGE_peak_3_at_LTA_5end | |description=CAGE_peak_3_at_LTA_5end | ||
|id=chr6:31540695..31540713,+ | |id=chr6:31540695..31540713,+ | ||
|ontology_enrichment_celltype=CL:0000945!8.42e-22!24;CL:0000826!8.42e-22!24;CL:0000838!2.73e-18!52;CL:0000542!6.86e-18!53;CL:0000051!6.86e-18!53;CL:0002087!6.34e-10!119;CL:0000080!1.35e-09!6;CL:0002031!2.19e-09!124;CL:0000988!3.61e-09!182;CL:0000738!4.51e-09!140;CL:0000946!6.38e-07!1;CL:0000786!6.38e-07!1;CL:0000980!6.38e-07!1 | |ontology_enrichment_celltype=CL:0000945!8.42e-22!24;CL:0000826!8.42e-22!24;CL:0000838!2.73e-18!52;CL:0000542!6.86e-18!53;CL:0000051!6.86e-18!53;CL:0002087!6.34e-10!119;CL:0000080!1.35e-09!6;CL:0002031!2.19e-09!124;CL:0000988!3.61e-09!182;CL:0000738!4.51e-09!140;CL:0000946!6.38e-07!1;CL:0000786!6.38e-07!1;CL:0000980!6.38e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0000945;5.50e-15;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,5.31e-15,24;CL:0000826,5.31e-15,24;CL:0000838,9.54e-11,52;CL:0000542,1.51e-10,53;CL:0000051,1.51e-10,53;CL:0000988,1.04e-07,177 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0060058!5.53e-09!10;DOID:0060060!2.36e-07!1;DOID:0060061!2.36e-07!1;DOID:8691!2.36e-07!1;DOID:630!2.66e-07!1;DOID:0050177!2.66e-07!1;DOID:0050427!2.66e-07!1 | |ontology_enrichment_disease=DOID:0060058!5.53e-09!10;DOID:0060060!2.36e-07!1;DOID:0060061!2.36e-07!1;DOID:8691!2.36e-07!1;DOID:630!2.66e-07!1;DOID:0050177!2.66e-07!1;DOID:0050427!2.66e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:0060060;1.67e-23;1!DOID:0060061;1.67e-23;1!DOID:8691;1.67e-23;1!DOID:630;2.93e-23;1!DOID:0050177;2.93e-23;1!DOID:0050427;2.93e-23;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,1.67e-23,1;DOID:0060061,1.67e-23,1;DOID:8691,1.67e-23,1;DOID:630,2.62e-23,1;DOID:0050177,2.62e-23,1;DOID:0050427,2.62e-23,1 | |||
|ontology_enrichment_uberon=UBERON:0004177!2.68e-07!7 | |ontology_enrichment_uberon=UBERON:0004177!2.68e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0002331;1.05e-20;10!UBERON:0000178;4.72e-14;15!UBERON:0000179;4.72e-14;15!UBERON:0000463;4.72e-14;15!UBERON:0000478;5.00e-09;24!UBERON:0002390;5.47e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,1.05e-20,10;UBERON:0000358,1.05e-20,10;UBERON:0000307,1.05e-20,10;UBERON:0000091,1.05e-20,10;UBERON:0000087,1.05e-20,10;UBERON:0007010,1.05e-20,10;UBERON:0007806,1.05e-20,10;UBERON:0008780,1.05e-20,10;UBERON:0005728,1.05e-20,10;UBERON:0000178,4.72e-14,15;UBERON:0000179,4.72e-14,15;UBERON:0000463,4.72e-14,15;UBERON:0000478,5.00e-09,24 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21598876669059,1.64201178899891,1.96776953284198,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0.612167784741805,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0.205601498999509,0.334372990781356,0,0,0,0.334231370655521,0,0,0,0.512365278902701,0.130059347559878,0,0.276350017785848,0,0,0.267540828089713,1.04535523804977,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0.431255149719035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.984678443688556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.44781693020933,16.0633120630454,9.08470960697462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.59945802176198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345701962667338,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0.435433495793923,0,0,0,0,0,0,0,0,0,0,0,0,0,2.24397944612263 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21598876669059,1.64201178899891,1.96776953284198,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0.612167784741805,0,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0.205601498999509,0.334372990781356,0,0,0,0.334231370655521,0,0,0,0.512365278902701,0.130059347559878,0,0.276350017785848,0,0,0.267540828089713,1.04535523804977,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0.431255149719035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.984678443688556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.44781693020933,16.0633120630454,9.08470960697462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.59945802176198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345701962667338,0,0,0,0,0,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0.435433495793923,0,0,0,0,0,0,0,0,0,0,0,0,0,2.24397944612263 | ||
|short_description=p3@LTA | |short_description=p3@LTA | ||
}} | }} |
Latest revision as of 21:12, 17 September 2015
Short description: | p3@LTA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LTA_5end |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | 0bp_to_uc003nuf.2, uc003nug.2, uc003nuh.2, uc010jsr.2_5end |
EntrezGene: | LTA |
HGNC: | 6709 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 5.31e-15 | 24 |
pro-B cell | 5.31e-15 | 24 |
lymphoid lineage restricted progenitor cell | 9.54e-11 | 52 |
lymphocyte | 1.51e-10 | 53 |
common lymphoid progenitor | 1.51e-10 | 53 |
hematopoietic cell | 1.04e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 1.05e-20 | 10 |
blastocyst | 1.05e-20 | 10 |
blastula | 1.05e-20 | 10 |
bilaminar disc | 1.05e-20 | 10 |
inner cell mass | 1.05e-20 | 10 |
cleaving embryo | 1.05e-20 | 10 |
connecting stalk | 1.05e-20 | 10 |
inner cell mass derived epiblast | 1.05e-20 | 10 |
extraembryonic mesoderm | 1.05e-20 | 10 |
blood | 4.72e-14 | 15 |
haemolymphatic fluid | 4.72e-14 | 15 |
organism substance | 4.72e-14 | 15 |
extraembryonic structure | 5.00e-09 | 24 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 1.67e-23 | 1 |
cutaneous T cell lymphoma | 1.67e-23 | 1 |
mycosis fungoides | 1.67e-23 | 1 |
genetic disease | 2.62e-23 | 1 |
monogenic disease | 2.62e-23 | 1 |
xeroderma pigmentosum | 2.62e-23 | 1 |