|
|
| (25 intermediate revisions by 3 users not shown) |
| Line 1: |
Line 1: |
| {{#set:id={{{id}}}}} | | {{Loading|loadingimage=sprites.gif}}{{#ask:[[Category:Novel_motif]]|mainlabel=Novel motif ID|?Logo|?name=name|format=ttable|class=novel_motif_list stripe cell-border order-column compact|limit=1100|headers=hide|searchlabel=}}<html> |
| <table> | | <style type="text/css" title="currentStyle"> |
| <tr><th scope="row" align="right">Name:</th><td>[[name::{{{name}}}]]</td></tr> | | @import "/5/sstar/rb_js/html5button/datatables.css"; |
| <tr><th scope="row" align="right">[[Property:Sample_species|Species]]:</th><td>[[sample_species::{{{sample_species}}}]]</td></tr> | | @import "/5/sstar/rb_js/datatables/extras/TableTools/media/css/TableTools.css"; |
| <tr><th scope="row" align="right">Genomic View:</th><td>[https://fantom5-collaboration.gsc.riken.jp/zenbu/dex/#section=Experiments;search={{#replace:{{{id}}}|FF:|}} zenbu] , [https://fantom5-collaboration.gsc.riken.jp/ucsc/cgi-bin/hgTracks?db={{#ifeq: {{{sample_species}}} | Human (Homo sapiens) | hg19 | }}{{#ifeq: {{{sample_species}}} | Mouse (Mus musculus) | mm9 | }}{{#ifeq: {{{sample_species}}} | Rat (Rattus rattus) | rn4 | }}{{#ifeq: {{{sample_species}}} | Dog (Canis lupus familaris) | canFam2 | }}{{#ifeq: {{{sample_species}}} | Chicken (Gallus gallus) | galGal3 | }}&tsCurTab=advancedTab&hgt_tsPage=&hgt_tSearch=search&tsName={{#replace:{{{id}}}|FF:|}} UCSC] </td></tr> | | .bgwhite { background-color: white}; |
| </table>
| | </style> |
| | <script type="text/javascript" src="/5/sstar/rb_js/jquery-1.7.1.min.js"></script> |
| | <script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.js"></script> |
| | <script type="text/javascript" language="javascript" src="/5/sstar/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script> |
| | <script type="text/javascript"> |
| | $(document).ready(function() { |
| | $('.novel_motif_list').DataTable({ |
| | dom: 'Blfrtip', |
| | lengthMenu: [[25, 50, -1], [25, 50, "All"]], |
| | processing: true, |
| | scrollCollapse: true, |
| | autoWidth: false, |
| | buttons: ['copyHtml5', 'excelHtml5', 'csvHtml5', 'pdfHtml5'], |
|
| |
|
| <html>
| | columns: [ |
| <style type="text/css" title="currentStyle">
| | { title: "Novel motif ID" }, |
| @import "/resource_browser/rb_js/datatables/media/css/f5_rb_table.css"; | | { title: "Logo" , |
| </style>
| | render: function ( data, type, row, meta ) { |
| <script type="text/javascript" language="javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.js"></script>
| | return "<img src=\"/5/sstar/seqlogos/novel/" + $(row[0]).text() + ".png\" style=\"width:80px;height:20px;border:1px solid lightgrey\">"; |
| | | }, |
| </html>
| | width: "50px", className: "bgwhite" |
| | }, |
| | { title: "Name", width: "50px" } |
| | ] |
| | }); |
|
| |
|
| {{#if: {{#pos:{{{expression_enrichment_score}}}|chr}} |
| | $('.dataTables_scrollBody').css("resize", "vertical"); |
| <html>
| |
| <br>
| |
| <!-- tf enrich table: start-->
| |
| <script type="text/javascript" charset="utf-8">
| |
| var ffcp_tf_enrichscore_d=
| |
| [
| |
| </html>
| |
| {{#exp_enrichscore_dtarr:{{{expression_enrichment_score}}}|FFCP_PHASE1:{{#switch: {{{sample_species}}} | Human (Homo sapiens) = Hg19 | Mouse (Mus musculus) = Mm9 }}::}}
| |
| <html>
| |
| ];
| |
|
| |
|
| $(document).ready(function() {
| |
| $('#ffcp_tf_enrichscore').html( '<table cellpadding="0" cellspacing="0" border="0" class="display" id="ffcp_tf_enrichscore_cont"></table>' );
| |
| $('#ffcp_tf_enrichscore_cont').dataTable( {
| |
| "sDom": '<"toolbar">frtip',
| |
| "sScrollY": "300px",
| |
| "bPaginate": false,
| |
| "bScrollCollapse": true,
| |
| "iDisplayLength": -1,
| |
| "aaData": ffcp_tf_enrichscore_d,
| |
| "aoColumns": [
| |
| { "sTitle": "FFCP Phase1","sWidth": "30px",
| |
| "fnRender": function(obj) {
| |
| var id = obj.aData[ obj.iDataColumn ].split("!");
| |
| return sReturn = "<a href=\"/resource_browser/"+encodeURI(id[0])+"\">"+id[1]+"</a>";
| |
| }
| |
| },
| |
| { "sTitle": "Enrichment Score","sWidth": "30px"},
| |
| { "sTitle": "TPM","sWidth": "30px"},
| |
| { "sTitle": "TF","sWidth": "30px"}
| |
|
| |
| ],
| |
| "aaSorting": [[ 1, "desc" ]]
| |
| } );
| |
| $("div.toolbar").html('<b>TF expression and enrichment</b>');
| |
| $("div.toolbar").css('border-width', '0 0 2px 0');
| |
| $("div.toolbar").css('border-color', '#6495ED');
| |
| $("div.toolbar").css('border-style', 'solid');
| |
| } );
| |
| </script>
| |
| <!-- tf enrich table: end-->
| |
| </html>
| |
| }}
| |
|
| |
| {{#if: {{#pos:{{{top_motifs}}}|;}} |
| |
| <html>
| |
| <!-- top motif table: start-->
| |
| <script type="text/javascript" charset="utf-8">
| |
| var top_motif_d=
| |
| [
| |
| </html>
| |
| {{#top_motifs_dtarr:{{{top_motifs}}}}}
| |
| <html>
| |
| ];
| |
|
| |
| $(document).ready(function() {
| |
| $('#top_motiftb').html( '<table cellpadding="0" cellspacing="0" border="0" class="display" id="top_motiftb_cont"></table>' );
| |
| $('#top_motiftb_cont').dataTable( {
| |
| "sDom": '<"top_motif_toolbar">frtip',
| |
| "sScrollY": "300px",
| |
| "bPaginate": false,
| |
| "bScrollCollapse": true,
| |
| "iDisplayLength": -1,
| |
| "aaData": top_motif_d,
| |
| "aoColumns": [
| |
| { "sTitle": "Motifs","sWidth": "30px",
| |
| "fnRender": function(obj) {
| |
| var id = obj.aData[ obj.iDataColumn ].split("!");
| |
| return sReturn = "<a href=\"/resource_browser/"+id[0]+"\">"+id[1]+"</a>";
| |
| }
| |
| },
| |
| { "sTitle": "Z-score", "sType": "numeric", "sWidth": "30px"},
| |
|
| |
| ],
| |
| "aaSorting": [[ 1, "desc" ]]
| |
| } );
| |
| $("div.top_motif_toolbar").html('<b>Top motif activities with MARA</b>');
| |
| $("div.top_motif_toolbar").css('border-width', '0 0 2px 0');
| |
| $("div.top_motif_toolbar").css('border-color', '#6495ED');
| |
| $("div.top_motif_toolbar").css('border-style', 'solid');
| |
| $("#top_motiftb thead th").css('line-height', '34px');
| |
| } );
| |
| </script>
| |
| <!-- top motif table: end-->
| |
| </html>
| |
| }}
| |
|
| |
| <html>
| |
| <div id="ffcp_tf_enrichscore" style="float:left;"></div>
| |
| <div id="top_motiftb" style="float:left;padding-left:15px;"></div>
| |
|
| |
| <div style="clear:both;"></div>
| |
|
| |
| <br>
| |
|
| |
| <script type="text/javascript">
| |
| $(document).ready(function() {
| |
| $('#homer_motif_table').dataTable({
| |
| "sScrollY": "300px",
| |
| "bFilter" : false,
| |
| "bPaginate": false,
| |
| "bScrollCollapse": true,
| |
| "iDisplayLength": -1,
| |
| "aoColumnDefs": [
| |
| { "asSorting": [ "desc" ], "aTargets": [ 2,3,4 ] }, { "bSortable": false, "aTargets": [1,5] }
| |
| ]
| |
| }); | | }); |
| } );
| |
| </script> | | </script> |
|
| |
|
| |
| <H3>Homer <i>de novo</i> Motif Results for CNhs10632_vs_median_8-fold_up-300+50merged</H3>
| |
| P-value threshold: 1e-15<BR/>
| |
| Matrix similarity threshold: 0.75<BR/>
| |
| Information content threshold: 1.5<BR/>
| |
| Minimum target frequency: 50<BR/>
| |
| Minimum background percentage: -1<BR/>
| |
| Total target sequences = 5327<BR/>
| |
| Total background sequences = 43180<BR/>
| |
|
| |
| <TABLE id="homer_motif_table" >
| |
| <thead>
| |
| <TR><th>Rank</th><th>Motif</th><th>Target hits</th><th>Background</th><th>P-value</th><th>Best Match/Details<br> and Motif File</th></TR>
| |
| </thead>
| |
| <tbody>
| |
| <TR><TD>1
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif1.logo.png" width=160 height=25/><TD>9.14% </td><td>1.14%</td><td>1e-264<br>(-6.092e+02)</TD><TD>JUN.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif1.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif1.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>2
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif2.logo.png" width=160 height=25/><TD>11.38% </td><td>2.45%</td><td>1e-209<br>(-4.824e+02)</TD><TD>SOX10_si_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif2.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif2.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>3
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif3.logo.png" width=160 height=25/><TD>7.12% </td><td>1.28%</td><td>1e-153<br>(-3.526e+02)</TD><TD>RFX1..5_RFXANK_RFXAP.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif3.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif3.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>4
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif4.logo.png" width=160 height=25/><TD>14.68% </td><td>5.34%</td><td>1e-140<br>(-3.229e+02)</TD><TD>CREB1_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif4.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif4.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>5
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif5.logo.png" width=160 height=25/><TD>60.12% </td><td>44.92%</td><td>1e-109<br>(-2.510e+02)</TD><TD>NFYA_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif5.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif5.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>6
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif6.logo.png" width=160 height=25/><TD>14.49% </td><td>6.31%</td><td>1e-99<br>(-2.296e+02)</TD><TD>BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif6.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif6.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>7
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif7.logo.png" width=160 height=25/><TD>26.46% </td><td>15.18%</td><td>1e-98<br>(-2.277e+02)</TD><TD>E4F1_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif7.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif7.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>8
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif8.logo.png" width=160 height=25/><TD>15.02% </td><td>7.77%</td><td>1e-69<br>(-1.602e+02)</TD><TD>RFX1_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif8.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif8.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>9
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif9.logo.png" width=160 height=25/><TD>25.03% </td><td>15.74%</td><td>1e-67<br>(-1.553e+02)</TD><TD>SP1_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif9.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif9.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>10
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif10.logo.png" width=160 height=25/><TD>5.73% </td><td>2.01%</td><td>1e-55<br>(-1.284e+02)</TD><TD>ATF1_si_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif10.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif10.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>11
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif11.logo.png" width=160 height=25/><TD>5.88% </td><td>2.10%</td><td>1e-55<br>(-1.280e+02)</TD><TD>NFYB_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif11.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif11.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>12
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif12.logo.png" width=160 height=25/><TD>11.43% </td><td>5.88%</td><td>1e-52<br>(-1.214e+02)</TD><TD>NRF1(NRF)/MCF7-NRF1-ChIP-Seq/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif12.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif12.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>13
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif13.logo.png" width=160 height=25/><TD>14.31% </td><td>8.32%</td><td>1e-47<br>(-1.083e+02)</TD><TD>ATF5_CREB3.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif13.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif13.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>14
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif14.logo.png" width=160 height=25/><TD>4.98% </td><td>1.78%</td><td>1e-46<br>(-1.081e+02)</TD><TD>RFX2_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif14.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif14.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>15
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif15.logo.png" width=160 height=25/><TD>65.83% </td><td>56.15%</td><td>1e-46<br>(-1.070e+02)</TD><TD>MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif15.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif15.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>16
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif16.logo.png" width=160 height=25/><TD>5.01% </td><td>1.87%</td><td>1e-44<br>(-1.018e+02)</TD><TD>Rfx1(HTH)/NPC-Rfx1-ChIP-Seq/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif16.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif16.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>17
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif17.logo.png" width=160 height=25/><TD>45.42% </td><td>36.08%</td><td>1e-43<br>(-1.010e+02)</TD><TD>ATF3_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif17.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif17.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>18
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif18.logo.png" width=160 height=25/><TD>3.57% </td><td>1.10%</td><td>1e-41<br>(-9.658e+01)</TD><TD>ATF2.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif18.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif18.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>19
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif19.logo.png" width=160 height=25/><TD>42.47% </td><td>33.66%</td><td>1e-40<br>(-9.269e+01)</TD><TD>PRDM14(Zf)/H1-PRDM14-ChIP-Seq/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif19.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif19.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>20
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif20.logo.png" width=160 height=25/><TD>13.91% </td><td>8.44%</td><td>1e-39<br>(-9.111e+01)</TD><TD>ELK1_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif20.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif20.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>21
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif21.logo.png" width=160 height=25/><TD>8.04% </td><td>4.06%</td><td>1e-38<br>(-8.841e+01)</TD><TD>MYB.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif21.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif21.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>22
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif22.logo.png" width=160 height=25/><TD>43.56% </td><td>35.32%</td><td>1e-34<br>(-8.012e+01)</TD><TD>E2F5_do_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif22.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif22.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>23
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif23.logo.png" width=160 height=25/><TD>51.05% </td><td>42.61%</td><td>1e-34<br>(-8.003e+01)</TD><TD>CDX1_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif23.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif23.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>24
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif24.logo.png" width=160 height=25/><TD>29.05% </td><td>22.01%</td><td>1e-32<br>(-7.498e+01)</TD><TD>ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif24.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif24.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>25
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif25.logo.png" width=160 height=25/><TD>4.41% </td><td>1.84%</td><td>1e-31<br>(-7.364e+01)</TD><TD>BATF_si_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif25.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif25.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>26
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif26.logo.png" width=160 height=25/><TD>9.31% </td><td>5.37%</td><td>1e-30<br>(-7.093e+01)</TD><TD>MAFG_si_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif26.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif26.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>27
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif27.logo.png" width=160 height=25/><TD>24.69% </td><td>18.41%</td><td>1e-29<br>(-6.805e+01)</TD><TD>HBP1_HMGB_SSRP1_UBTF.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif27.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif27.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>28
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif28.logo.png" width=160 height=25/><TD>25.03% </td><td>18.78%</td><td>1e-28<br>(-6.643e+01)</TD><TD>BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif28.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif28.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>29
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif29.logo.png" width=160 height=25/><TD>18.64% </td><td>13.45%</td><td>1e-25<br>(-5.925e+01)</TD><TD>ZBTB33/GM12878-ZBTB33-ChIP-Seq/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif29.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif29.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>30
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif30.logo.png" width=160 height=25/><TD>25.25% </td><td>19.53%</td><td>1e-23<br>(-5.516e+01)</TD><TD>E2F(E2F)/Cell-Cycle-Exp/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif30.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif30.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>31
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif31.logo.png" width=160 height=25/><TD>22.64% </td><td>17.33%</td><td>1e-22<br>(-5.185e+01)</TD><TD>MYB_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif31.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif31.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>32
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif32.logo.png" width=160 height=25/><TD>48.33% </td><td>41.62%</td><td>1e-22<br>(-5.177e+01)</TD><TD>SPIB.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif32.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif32.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>33
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif33.logo.png" width=160 height=25/><TD>5.91% </td><td>3.25%</td><td>1e-22<br>(-5.162e+01)</TD><TD>MYB.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif33.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif33.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>34
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif34.logo.png" width=160 height=25/><TD>1.69% </td><td>0.49%</td><td>1e-22<br>(-5.087e+01)</TD><TD>HSF2_si_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif34.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif34.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>35
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif35.logo.png" width=160 height=25/><TD>87.66% </td><td>82.97%</td><td>1e-20<br>(-4.812e+01)</TD><TD>Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif35.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif35.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>36
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif36.logo.png" width=160 height=25/><TD>12.20% </td><td>8.41%</td><td>1e-20<br>(-4.724e+01)</TD><TD>NRF1.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif36.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif36.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>37
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif37.logo.png" width=160 height=25/><TD>49.36% </td><td>42.96%</td><td>1e-20<br>(-4.723e+01)</TD><TD>TGIF1_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif37.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif37.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>38
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif38.logo.png" width=160 height=25/><TD>1.88% </td><td>0.62%</td><td>1e-20<br>(-4.671e+01)</TD><TD>CREB1_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif38.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif38.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>39
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif39.logo.png" width=160 height=25/><TD>3.76% </td><td>1.81%</td><td>1e-20<br>(-4.632e+01)</TD><TD>ETS:E-box/HPC7-Scl-ChIP-Seq/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif39.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif39.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>40
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif40.logo.png" width=160 height=25/><TD>13.67% </td><td>9.71%</td><td>1e-19<br>(-4.582e+01)</TD><TD>PRGR_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif40.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif40.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>41
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif41.logo.png" width=160 height=25/><TD>9.01% </td><td>5.88%</td><td>1e-19<br>(-4.403e+01)</TD><TD>ZBT7B_si_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif41.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif41.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>42
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif42.logo.png" width=160 height=25/><TD>50.54% </td><td>44.43%</td><td>1e-18<br>(-4.313e+01)</TD><TD>TBP.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif42.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif42.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>43
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif43.logo.png" width=160 height=25/><TD>3.32% </td><td>1.60%</td><td>1e-18<br>(-4.160e+01)</TD><TD>ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif43.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif43.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>44
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif44.logo.png" width=160 height=25/><TD>59.59% </td><td>53.74%</td><td>1e-17<br>(-4.004e+01)</TD><TD>ISL1_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif44.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif44.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>45
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif45.logo.png" width=160 height=25/><TD>5.43% </td><td>3.16%</td><td>1e-17<br>(-3.975e+01)</TD><TD>SRBP2_f1_HM09<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif45.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif45.motif">Motif File (PWM)</A></TD></TR>
| |
| <TR><TD>46
| |
| </TD><TD><IMG src="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif46.logo.png" width=160 height=25/><TD>2.97% </td><td>1.41%</td><td>1e-16<br>(-3.816e+01)</TD><TD>NFY{A,B,C}.p2.SwissRegulon.nucfreq<BR/><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif46.info.html">More Info/Top 5 Known Motifs</A><br><A target="_blank" HREF="/resource_browser/Homer_de_novo_Motif_Results/testis_adult_pool1.CNhs10632.10026-101D8/homerResults/motif46.motif">Motif File (PWM)</A></TD></TR>
| |
| </tbody>
| |
| </TABLE>
| |
|
| |
|
| |
| </html> | | </html> |
|
| |
|
| |
|
| |
| == Details ==
| |
|
| |
|
| |
| === Transcriptome profiling ===
| |
| <table>
| |
| <tr><th scope="row" align="right"> [[Property:profile_hcage|hCAGE]] </th> <td> [[profile_hcage::{{{profile_hcage}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:profile_rnaseq|RNA-seq]] </th><td> [[profile_rnaseq::{{{profile_rnaseq}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:profile_srnaseq|smallRNA seq]] </th><td> [[profile_srnaseq::{{{profile_srnaseq}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:profile_cagescan|nanoCAGEscan]]</th><td> [[profile_cagescan::{{{profile_cagescan}}}]]
| |
| </table>
| |
|
| |
| === Sample info ===
| |
| <table>
| |
| <tr><th scope="row" align="right"> [[Property:sample_strain|strain]] </th><td> [[sample_strain::{{{sample_strain}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:sample_tissue|tissue]]</th><td> [[sample_tissue::{{{sample_tissue}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:sample_dev_stage|dev_stage]] </th><td> [[sample_dev_stage::{{{sample_dev_stage}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:sample_sex|sex]]</th><td> [[sample_sex::{{{sample_sex}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:sample_age|age]]</th><td> [[sample_age::{{{sample_age}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:sample_ethnicity|ethnicity]]</th><td> [[sample_ethnicity::{{{sample_ethnicity}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:sample_cell_type|cell_type]]</th><td> [[sample_cell_type::{{{sample_cell_type}}}]] </td>
| |
| <tr><th scope="row" align="right"> [[Property:sample_cell_line|cell_line]]</th><td> [[sample_cell_line::{{{sample_cell_line}}}]] </td>
| |
| <tr><th scope="row" align="right"> [[Property:sample_collaboration|collaboration]]</th><td> [[sample_collaboration::{{{sample_collaboration}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:sample_experimental_condition|Experimental condition]]</th><td>[[sample_experimental_condition::{{{sample_experimental_condition}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:sample_disease|disease]]</th><td> [[sample_disease::{{{sample_disease}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:sample_cell_lot|cell_lot]]</th><td> [[sample_cell_lot::{{{sample_cell_lot}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:sample_cell_catalog|cell_catalog]]</th><td> [[sample_cell_catalog::{{{sample_cell_catalog}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:sample_company|company]]</th><td> [[sample_company::{{{sample_company}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:sample_donor(cell lot)|donor(cell lot)]]</th><td> [[sample_donor(cell lot)::{{{sample_donor(cell lot)}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:sample_note|Note]]</th><td> [[sample_note::{{{sample_note}}}]]</td>
| |
| </table>
| |
|
| |
|
| |
|
| |
| === RNA info ===
| |
| <table>
| |
| <tr><th scope="row" align="right"> [[Property:sample_id|sample_id]] </th><td>[[sample_id::{{{sample_id}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:rna_tube_id|tube_id]]</th><td> [[rna_tube_id::{{{rna_tube_id}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:rna_box|box]]</th><td> [[rna_box::{{{rna_box}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:rna_position|position]]</th><td> [[rna_position::{{{rna_position}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:rna_lot_number|lot_number]]</th><td> [[rna_lot_number::{{{rna_lot_number}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:rna_catalog_number|catalog_number]]</th><td> [[rna_catalog_number::{{{rna_catalog_number}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:rna_rin|RIN]]</th><td> [[rna_rin::{{{rna_rin}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:rna_od260/230|OD260/230]]</th><td> [[rna_od260/230::{{{rna_od260/230}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:rna_od260/280|OD260/280]]</th><td> [[rna_od260/280::{{{rna_od260/280}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:rna_sample_type|sample_type]]</th><td> [[rna_sample_type::{{{rna_sample_type}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:rna_extraction_protocol|extraction_protocol]]</th><td> [[rna_extraction_protocol::{{{rna_extraction_protocol}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:rna_weight_ug|weight_ug]]</th><td> [[rna_weight_ug::{{{rna_weight_ug}}}]]</td>
| |
| <tr><th scope="row" align="right"> [[Property:rna_concentration|concentration]]</th><td>[[rna_concentration::{{{rna_concentration}}}]]</td>
| |
| </table>
| |
|
| |
| == Parent ontology==
| |
| {{#if: {{{is_a}}} |
| |
| <div style="width:25%; float:left;">
| |
| '''is_a relathionship'''<br>{{#arraymap:{{{is_a}}}|;;|$|
| |
| {{#set:is_a=$}}{{#ifexist:$|[[$|$ {{#show:$|?name}}]]|$}}|<br>}}
| |
| </div>
| |
| |}}
| |
| {{#if: {{{part_of}}} |
| |
| <div style="width:25%; float:left;">
| |
| '''part_of relathionship'''<br>{{#arraymap:{{{part_of}}}|;;|$|
| |
| {{#set:part_of=$}}{{#ifexist:$|[[$|$ {{#show:$|?name}}]]|$}}|<br>}}
| |
| </div>
| |
| |}}
| |
| {{#if: {{{has_quality}}} |
| |
| <div style="width:25%; float:left;">
| |
| '''has_quality relathionship'''<br>{{#arraymap:{{{has_quality}}}|;;|$|
| |
| {{#set:has_quality=$}}{{#ifexist:$|[[$|$ {{#show:$|?name}}]]|$}}|<br>}}
| |
| </div>
| |
| |}}
| |
|
| |
| <div style="clear:both;"></div>
| |
|
| |
| == Ancestors in FF ontology ==
| |
| <!--
| |
| {{#if: {{{ancestors_in_cell_lineage_facet}}} |'''Cell_lineage'''<br>{{#arraymap:{{{ancestors_in_cell_lineage_facet}}}|,|$|
| |
| {{#set:ancestors_in_cell_lineage_facet=$}}CL:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}|}}
| |
| {{#if: {{{ancestors_in_disease_facet}}} |<br>'''Disease'''<br>{{#arraymap:{{{ancestors_in_disease_facet}}}|,|$|
| |
| {{#set:ancestors_in_disease_facet=$}}DOID:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}|}}
| |
| {{#if: {{{ancestors_in_anatomy_facet}}} |<br>'''Anatomy'''<br>{{#arraymap:{{{ancestors_in_anatomy_facet}}}|,|$|
| |
| {{#set:ancestors_in_anatomy_facet=$}}UBERON:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}|}}
| |
| -->
| |
|
| |
| <table>
| |
| <tr><th align="left">Anatomy</th><th align="left">Cell type</th> <th align="left">Disease</th>
| |
| <tr>
| |
| <td align="left" valign="top">
| |
| {{#arraymap:{{{ancestors_in_anatomy_facet}}}|,|$|{{#set:ancestors_in_anatomy_facet=$}}UBERON:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}
| |
| </td>
| |
| <td align="left" valign="top">
| |
| {{#arraymap:{{{ancestors_in_cell_lineage_facet}}}|,|$|{{#set:ancestors_in_cell_lineage_facet=$}}CL:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}
| |
| </td>
| |
| <td align="left" valign="top">
| |
| {{#arraymap:{{{ancestors_in_disease_facet}}}|,|$|{{#set:ancestors_in_disease_facet=$}}DOID:{{#ask:[[id::$]]|?name=|format=list}}|<br>}}
| |
| </td>
| |
|
| |
|
| |
|
| |
|
| |
|
| |
| <!-- turn off for now
| |
| <div>
| |
| {{#ifeq: {{{sample_species}}} | Human (Homo sapiens) | http://upload.wikimedia.org/wikipedia/commons/thumb/1/11/Uomo_Vitruviano.jpg/86px-Uomo_Vitruviano.jpg | }}
| |
| {{#ifeq: {{{sample_species}}} | Mouse (Mus musculus) | http://genome.ucsc.edu/images/Mus_musculus.jpg | }}
| |
| {{#ifeq: {{{sample_species}}} | Rat (Rattus rattus) | http://genome.ucsc.edu/images/Rattus_norvegicus.jpg | }}
| |
| {{#ifeq: {{{sample_species}}} | Dog (Canis lupus familaris) | http://genome.ucsc.edu/images/Canis_familiaris.jpg | }}
| |
| {{#ifeq: {{{sample_species}}} | Chicken (Gallus gallus) | http://genome.ucsc.edu/images/Gallus_gallus.jpg | }}
| |
| </div>
| |
| -->
| |
|
| |
| [[Category:FF_Ontology]]
| |
| [[Category:FF_Samples]]
| |
