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{{DOID
{{DOID
|id=DOID:3119
|alt_id=DOID:4945;;DOID:8377
|name=gastrointestinal system cancer
|namespace=disease_ontology
|def="An organ system cancer located_in gastrointestinal tract that is manifested in organs of the gastrointestinal system." [url:http\://en.wikipedia.org/wiki/Human_gastrointestinal_tract]
|xref=ICD9CM:239.0;;MSH:D004067;;SNOMEDCT_2010_1_31:126768004;;SNOMEDCT_2010_1_31:128348002;;SNOMEDCT_2010_1_31:128415001;;SNOMEDCT_2010_1_31:189527000;;SNOMEDCT_2010_1_31:276806006;;SNOMEDCT_2010_1_31:367543008;;SNOMEDCT_2010_1_31:428905002;;SNOMEDCT_2010_1_31:93811007;;UMLS_CUI:C0012243;;UMLS_CUI:C0017185;;UMLS_CUI:C0685938
|is_a=DOID:0050686
|synonym="digestive system cancer" EXACT [];;"gastrointestinal tract cancer" EXACT [NCI2004_11_17:C4890];;"GI tumor" EXACT [NCI2004_11_17:C3052]
|comment=
|comment=
|alt_id=DOID:4945;;DOID:8377
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An organ system cancer located_in gastrointestinal tract that is manifested in organs of the gastrointestinal system." [url:http://en.wikipedia.org/wiki/Human_gastrointestinal_tract]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3119
|is_a=DOID:0050686
|is_obsolete=
|located_in=
|located_in=
|name=gastrointestinal system cancer
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="digestive system cancer" EXACT [];;"gastrointestinal tract cancer" EXACT [NCI2004_11_17:C4890];;"GI tumor" EXACT [NCI2004_11_17:C3052]
|union_of=
|xref=ICD9CM:239.0;;MSH:D004067;;SNOMEDCT_2010_1_31:126768004;;SNOMEDCT_2010_1_31:128348002;;SNOMEDCT_2010_1_31:128415001;;SNOMEDCT_2010_1_31:189527000;;SNOMEDCT_2010_1_31:276806006;;SNOMEDCT_2010_1_31:367543008;;SNOMEDCT_2010_1_31:428905002;;SNOMEDCT_2010_1_31:93811007;;UMLS_CUI:C0012243;;UMLS_CUI:C0017185;;UMLS_CUI:C0685938
}}
}}

Latest revision as of 16:50, 12 September 2014

Name:gastrointestinal system cancer
Namespace:FANTOM
Definition:"An organ system cancer located_in gastrointestinal tract that is manifested in organs of the gastrointestinal system." [url:http://en.wikipedia.org/wiki/Human_gastrointestinal_tract]
Xrefs:
links:

ICD9CM:239.0
MSH:D004067
SNOMEDCT_2010_1_31:126768004
SNOMEDCT_2010_1_31:128348002
SNOMEDCT_2010_1_31:128415001
SNOMEDCT_2010_1_31:189527000
SNOMEDCT_2010_1_31:276806006
SNOMEDCT_2010_1_31:367543008
SNOMEDCT_2010_1_31:428905002
SNOMEDCT_2010_1_31:93811007
UMLS_CUI:C0012243
UMLS_CUI:C0017185

UMLS_CUI:C0685938
Synonyms: "digestive system cancer" EXACT []
"gastrointestinal tract cancer" EXACT [NCI2004_11_17:C4890]
"GI tumor" EXACT [NCI2004_11_17:C3052]
Alt_id: DOID:4945
DOID:8377

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:0050686(organ system cancer)



Children


is a:DOID:0060119 (pharynx cancer),FF:0100797 (colonic cancer cell line),DOID:10155 (intestinal cancer),FF:10417-106C3 (papillotubular adenocarcinoma cell line:TGBC18TKB),DOID:10534 (stomach cancer),FF:10628-108H7 (),DOID:3571 (liver cancer),DOID:8618 (oral cavity cancer)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3119 (gastrointestinal system cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.76e-45FFCP PHASE1:Hg19::chr7:13545393..13545395,+#_3a801c9486010a9a25fd6e084cea2858p@chr7:13545393..13545395, +
1.76e-45FFCP PHASE2:Hg19::chr7:13545393..13545395,+#_3a801c9486010a9a25fd6e084cea2858p@chr7:13545393..13545395, +
1.46e-32FFCP PHASE2:Hg19::chr7:12997533..12997536,+#_703ebab38b9e55c2c0791f3c52fba433p@chr7:12997533..12997536, +
1.46e-32FFCP PHASE1:Hg19::chr7:12997533..12997536,+#_703ebab38b9e55c2c0791f3c52fba433p@chr7:12997533..12997536, +
2.02e-32FFCP PHASE1:Hg19::chr8:139755835..139755842,-#_6f4a0e38a1a70f9c4cef89df0692f9a2p@chr8:139755835..139755842, -
2.02e-32FFCP PHASE2:Hg19::chr8:139755835..139755842,-#_6f4a0e38a1a70f9c4cef89df0692f9a2p@chr8:139755835..139755842, -
5.55e-30FFCP PHASE1:Hg19::chr1:20813515..20813530,-#_0ae09fd3f37625f40f676543ce0e1306p@chr1:20813515..20813530, -
5.55e-30FFCP PHASE2:Hg19::chr1:20813515..20813530,-#_0ae09fd3f37625f40f676543ce0e1306p@chr1:20813515..20813530, -
2.55e-29FFCP PHASE1:Hg19::chr2:163942394..163942398,+#_7f4e093949e24eb0389cec8c1eb977abp@chr2:163942394..163942398, +
2.55e-29FFCP PHASE2:Hg19::chr17:63771073..63771114,-#_7f4e093949e24eb0389cec8c1eb977abp@chr17:63771073..63771114, -
2.55e-29FFCP PHASE2:Hg19::chr16:1631093..1631103,-#_7f4e093949e24eb0389cec8c1eb977abp@chr16:1631093..1631103, -
2.55e-29FFCP PHASE2:Hg19::chr7:27282288..27282293,-#_7f4e093949e24eb0389cec8c1eb977abp2@ENST00000519050
2.55e-29FFCP PHASE1:Hg19::chr20:2397889..2397925,+#_7f4e093949e24eb0389cec8c1eb977abp@chr20:2397889..2397925, +
2.55e-29FFCP PHASE1:Hg19::chr7:13045950..13045959,+#_7f4e093949e24eb0389cec8c1eb977abp@chr7:13045950..13045959, +
2.55e-29FFCP PHASE2:Hg19::chr2:163942394..163942398,+#_7f4e093949e24eb0389cec8c1eb977abp@chr2:163942394..163942398, +
2.55e-29FFCP PHASE1:Hg19::chr18:28860939..28860953,-#_7f4e093949e24eb0389cec8c1eb977abp@chr18:28860939..28860953, -
2.55e-29FFCP PHASE2:Hg19::chr7:13045950..13045959,+#_7f4e093949e24eb0389cec8c1eb977abp@chr7:13045950..13045959, +
2.55e-29FFCP PHASE1:Hg19::chr6:102247584..102247620,+#_7f4e093949e24eb0389cec8c1eb977abp@chr6:102247584..102247620, +
2.55e-29FFCP PHASE1:Hg19::chr2:158443804..158443809,-#_7f4e093949e24eb0389cec8c1eb977abp@chr2:158443804..158443809, -
2.55e-29FFCP PHASE2:Hg19::chr20:2397889..2397925,+#_7f4e093949e24eb0389cec8c1eb977abp@chr20:2397889..2397925, +
2.55e-29FFCP PHASE1:Hg19::chr16:1631093..1631103,-#_7f4e093949e24eb0389cec8c1eb977abp@chr16:1631093..1631103, -
2.55e-29FFCP PHASE1:Hg19::chr2:130067633..130067649,-#_7f4e093949e24eb0389cec8c1eb977abp@chr2:130067633..130067649, -
2.55e-29FFCP PHASE2:Hg19::chr18:28860939..28860953,-#_7f4e093949e24eb0389cec8c1eb977abp@chr18:28860939..28860953, -
2.55e-29FFCP PHASE1:Hg19::chr17:63771073..63771114,-#_7f4e093949e24eb0389cec8c1eb977abp@chr17:63771073..63771114, -
2.55e-29FFCP PHASE2:Hg19::chr6:102247584..102247620,+#_7f4e093949e24eb0389cec8c1eb977abp@chr6:102247584..102247620, +
2.55e-29FFCP PHASE2:Hg19::chr2:158443804..158443809,-#_7f4e093949e24eb0389cec8c1eb977abp@chr2:158443804..158443809, -
2.55e-29FFCP PHASE1:Hg19::chr7:27282288..27282293,-#_7f4e093949e24eb0389cec8c1eb977abp2@ENST00000519050
2.55e-29FFCP PHASE2:Hg19::chr2:130067633..130067649,-#_7f4e093949e24eb0389cec8c1eb977abp@chr2:130067633..130067649, -
1.85e-28FFCP PHASE1:Hg19::chr8:140614358..140614378,-#_22d048b72cb2af68de5664f918b7e726p1@KCNK9
1.85e-28FFCP PHASE2:Hg19::chr8:140614358..140614378,-#_22d048b72cb2af68de5664f918b7e726p1@KCNK9
1.19e-25FFCP PHASE2:Hg19::chr19:3068219..3068225,-#_69026c5fdaf3e98777a9e12c2d691d53p@chr19:3068219..3068225, -
1.19e-25FFCP PHASE1:Hg19::chr19:3068219..3068225,-#_69026c5fdaf3e98777a9e12c2d691d53p@chr19:3068219..3068225, -
1.27e-25FFCP PHASE2:Hg19::chr2:2850815..2850821,-#_58d0944087c6c9522789e92a42446e58p@chr2:2850815..2850821, -
1.27e-25FFCP PHASE1:Hg19::chr2:2850815..2850821,-#_58d0944087c6c9522789e92a42446e58p@chr2:2850815..2850821, -
1.37e-23FFCP PHASE1:Hg19::chr12:109747040..109747055,-#_7defa3350b2ec14f5772b10eeb43dc91p1@FOXN4
1.37e-23FFCP PHASE2:Hg19::chr12:109747040..109747055,-#_7defa3350b2ec14f5772b10eeb43dc91p1@FOXN4
5.56e-23FFCP PHASE2:Hg19::chr13:28494130..28494168,+#_e9a9bb14d484f82911a33d3df7e5cb3fp1@PDX1
5.56e-23FFCP PHASE1:Hg19::chr13:28494130..28494168,+#_e9a9bb14d484f82911a33d3df7e5cb3fp1@PDX1
7.83e-23FFCP PHASE1:Hg19::chr3:34281730..34281733,+#_bdf74c8f2acc057c2018381a2106615bp@chr3:34281730..34281733, +
7.83e-23FFCP PHASE2:Hg19::chr3:34281730..34281733,+#_bdf74c8f2acc057c2018381a2106615bp@chr3:34281730..34281733, +
1.46e-22FFCP PHASE2:Hg19::chr7:13524410..13524415,+#_c36bf6d289d40b78ba27baeece5d4fdbp@chr7:13524410..13524415, +
1.46e-22FFCP PHASE1:Hg19::chr7:13524410..13524415,+#_c36bf6d289d40b78ba27baeece5d4fdbp@chr7:13524410..13524415, +
5.6e-22FFCP PHASE1:Hg19::chr7:142457254..142457278,+#_03716795fd4355ffb5ddfdb3d179b31ep3@PRSS1
5.6e-22FFCP PHASE2:Hg19::chr7:142457254..142457278,+#_03716795fd4355ffb5ddfdb3d179b31ep3@PRSS1
5.79e-22FFCP PHASE1:Hg19::chr6:31683157..31683167,+#_34c26525943e207fc69e7b45375da1c9p3@LY6G6D
5.79e-22FFCP PHASE2:Hg19::chr6:31683157..31683167,+#_34c26525943e207fc69e7b45375da1c9p3@LY6G6D
6.21e-22FFCP PHASE1:Hg19::chr17:70614580..70614613,-#_a5f97c29276ba5be0e57cc4811ab8bd6p@chr17:70614580..70614613, -
6.21e-22FFCP PHASE2:Hg19::chr17:70614580..70614613,-#_a5f97c29276ba5be0e57cc4811ab8bd6p@chr17:70614580..70614613, -
6.67e-22FFCP PHASE1:Hg19::chr21:43815581..43815595,-#_ab2d05383d9c2b83cd114a05ea3d2d76p5@TMPRSS3
6.67e-22FFCP PHASE2:Hg19::chr21:43815581..43815595,-#_ab2d05383d9c2b83cd114a05ea3d2d76p5@TMPRSS3
7.17e-22FFCP PHASE2:Hg19::chr1:163025530..163025535,-#_85f1471e7fa7966f3660e4ee98110a79p@chr1:163025530..163025535, -
7.17e-22FFCP PHASE1:Hg19::chr1:163025530..163025535,-#_85f1471e7fa7966f3660e4ee98110a79p@chr1:163025530..163025535, -
8.27e-22FFCP PHASE1:Hg19::chr1:163025442..163025452,-#_2afd870e8fb69f6e0e185fec006b0a0fp@chr1:163025442..163025452, -
8.27e-22FFCP PHASE2:Hg19::chr1:163025442..163025452,-#_2afd870e8fb69f6e0e185fec006b0a0fp@chr1:163025442..163025452, -
4.85e-21FFCP PHASE1:Hg19::chr7:13447097..13447101,+#_0bb5e9a5e4671e970e60d72db0fdf507p@chr7:13447097..13447101, +
4.85e-21FFCP PHASE2:Hg19::chr7:13447097..13447101,+#_0bb5e9a5e4671e970e60d72db0fdf507p@chr7:13447097..13447101, +
6.72e-21FFCP PHASE2:Hg19::chr13:72358093..72358097,-#_d16b04437f2ee582512b8fb88ed688e3p@chr13:72358093..72358097, -
6.72e-21FFCP PHASE1:Hg19::chr13:72358093..72358097,-#_d16b04437f2ee582512b8fb88ed688e3p@chr13:72358093..72358097, -
5.89e-20FFCP PHASE2:Hg19::chr11:90181744..90181756,+#_c662d2b57ec2d6c67be125d4675643c0p@chr11:90181744..90181756, +
5.89e-20FFCP PHASE2:Hg19::chr7:19417679..19417693,+#_c662d2b57ec2d6c67be125d4675643c0p@chr7:19417679..19417693, +
5.89e-20FFCP PHASE1:Hg19::chr17:27382155..27382164,+#_c662d2b57ec2d6c67be125d4675643c0p@chr17:27382155..27382164, +
5.89e-20FFCP PHASE2:Hg19::chr2:130067654..130067664,-#_c662d2b57ec2d6c67be125d4675643c0p@chr2:130067654..130067664, -
5.89e-20FFCP PHASE1:Hg19::chr6:1054763..1054800,-#_c662d2b57ec2d6c67be125d4675643c0p@chr6:1054763..1054800, -
5.89e-20FFCP PHASE1:Hg19::chr11:90181744..90181756,+#_c662d2b57ec2d6c67be125d4675643c0p@chr11:90181744..90181756, +
5.89e-20FFCP PHASE1:Hg19::chr7:150499243..150499249,-#_c662d2b57ec2d6c67be125d4675643c0p@chr7:150499243..150499249, -
5.89e-20FFCP PHASE1:Hg19::chr1:223853431..223853436,-#_c662d2b57ec2d6c67be125d4675643c0p4@CAPN8
5.89e-20FFCP PHASE1:Hg19::chr1:52442908..52442917,-#_c662d2b57ec2d6c67be125d4675643c0p9@RAB3B
5.89e-20FFCP PHASE2:Hg19::chr6:1054763..1054800,-#_c662d2b57ec2d6c67be125d4675643c0p@chr6:1054763..1054800, -
5.89e-20FFCP PHASE2:Hg19::chr7:150499243..150499249,-#_c662d2b57ec2d6c67be125d4675643c0p@chr7:150499243..150499249, -
5.89e-20FFCP PHASE2:Hg19::chr17:27382155..27382164,+#_c662d2b57ec2d6c67be125d4675643c0p@chr17:27382155..27382164, +
5.89e-20FFCP PHASE2:Hg19::chr1:223853431..223853436,-#_c662d2b57ec2d6c67be125d4675643c0p4@CAPN8
5.89e-20FFCP PHASE2:Hg19::chr1:52442908..52442917,-#_c662d2b57ec2d6c67be125d4675643c0p9@RAB3B
5.89e-20FFCP PHASE1:Hg19::chr7:19417679..19417693,+#_c662d2b57ec2d6c67be125d4675643c0p@chr7:19417679..19417693, +
5.89e-20FFCP PHASE1:Hg19::chr2:130067654..130067664,-#_c662d2b57ec2d6c67be125d4675643c0p@chr2:130067654..130067664, -
6.48e-20FFCP PHASE1:Hg19::chr12:28004664..28004668,+#_799802610c761be5176ee6e3509f267ep@chr12:28004664..28004668, +
6.48e-20FFCP PHASE1:Hg19::chr8:61761056..61761069,+#_799802610c761be5176ee6e3509f267ep@chr8:61761056..61761069, +
6.48e-20FFCP PHASE1:Hg19::chr7:13531282..13531289,+#_799802610c761be5176ee6e3509f267ep@chr7:13531282..13531289, +
6.48e-20FFCP PHASE1:Hg19::chr11:90181710..90181723,+#_799802610c761be5176ee6e3509f267ep@chr11:90181710..90181723, +
6.48e-20FFCP PHASE1:Hg19::chr19:48876344..48876351,+#_799802610c761be5176ee6e3509f267ep@chr19:48876344..48876351, +
6.48e-20FFCP PHASE2:Hg19::chr2:50452322..50452343,+#_799802610c761be5176ee6e3509f267ep@chr2:50452322..50452343, +
6.48e-20FFCP PHASE1:Hg19::chr18:53165290..53165321,-#_799802610c761be5176ee6e3509f267ep@chr18:53165290..53165321, -
6.48e-20FFCP PHASE2:Hg19::chr7:13531282..13531289,+#_799802610c761be5176ee6e3509f267ep@chr7:13531282..13531289, +
6.48e-20FFCP PHASE2:Hg19::chr8:61761056..61761069,+#_799802610c761be5176ee6e3509f267ep@chr8:61761056..61761069, +
6.48e-20FFCP PHASE1:Hg19::chr1:165198157..165198181,-#_799802610c761be5176ee6e3509f267ep@chr1:165198157..165198181, -
6.48e-20FFCP PHASE1:Hg19::chr10:102207688..102207707,+#_799802610c761be5176ee6e3509f267ep@chr10:102207688..102207707, +
6.48e-20FFCP PHASE2:Hg19::chr19:48876344..48876351,+#_799802610c761be5176ee6e3509f267ep@chr19:48876344..48876351, +
6.48e-20FFCP PHASE2:Hg19::chr18:53165290..53165321,-#_799802610c761be5176ee6e3509f267ep@chr18:53165290..53165321, -
6.48e-20FFCP PHASE2:Hg19::chr1:165198157..165198181,-#_799802610c761be5176ee6e3509f267ep@chr1:165198157..165198181, -
6.48e-20FFCP PHASE1:Hg19::chr8:128908649..128908661,+#_799802610c761be5176ee6e3509f267ep@chr8:128908649..128908661, +
6.48e-20FFCP PHASE1:Hg19::chr8:128808502..128808513,+#_799802610c761be5176ee6e3509f267ep@chr8:128808502..128808513, +
6.48e-20FFCP PHASE1:Hg19::chr9:12159267..12159271,+#_799802610c761be5176ee6e3509f267ep@chr9:12159267..12159271, +
6.48e-20FFCP PHASE2:Hg19::chr12:28004664..28004668,+#_799802610c761be5176ee6e3509f267ep@chr12:28004664..28004668, +
6.48e-20FFCP PHASE2:Hg19::chr11:90181710..90181723,+#_799802610c761be5176ee6e3509f267ep@chr11:90181710..90181723, +
6.48e-20FFCP PHASE2:Hg19::chr8:128908649..128908661,+#_799802610c761be5176ee6e3509f267ep@chr8:128908649..128908661, +
6.48e-20FFCP PHASE2:Hg19::chr8:128808502..128808513,+#_799802610c761be5176ee6e3509f267ep@chr8:128808502..128808513, +
6.48e-20FFCP PHASE2:Hg19::chr9:12159267..12159271,+#_799802610c761be5176ee6e3509f267ep@chr9:12159267..12159271, +
6.48e-20FFCP PHASE1:Hg19::chr2:50452322..50452343,+#_799802610c761be5176ee6e3509f267ep@chr2:50452322..50452343, +
6.48e-20FFCP PHASE2:Hg19::chr10:102207688..102207707,+#_799802610c761be5176ee6e3509f267ep@chr10:102207688..102207707, +
7.13e-20FFCP PHASE2:Hg19::chr14:54235896..54235906,-#_cd35a5c5b2ad16ae69209dcddd043599p@chr14:54235896..54235906, -
7.13e-20FFCP PHASE1:Hg19::chr7:100807004..100807014,+#_cd35a5c5b2ad16ae69209dcddd043599p@chr7:100807004..100807014, +

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