UBERON:0002435: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:MA_0000891-FMA_77618 | ||
|anatomical_img_id=FMA:77618 | |||
| | |||
|comment=AO notes: FMA divides striatum of neuraxis into 4, neostriatum is seperate class. In NIF these are synonyms. TODO - check striatum vs corpus striatum see http://en.wikipedia.org/wiki/Striatum#History. Check caudoputamen | |comment=AO notes: FMA divides striatum of neuraxis into 4, neostriatum is seperate class. In NIF these are synonyms. TODO - check striatum vs corpus striatum see http://en.wikipedia.org/wiki/Striatum#History. Check caudoputamen | ||
|created_by= | |created_by= | ||
| | |def="A region of the forebrain consisting of the caudate nucleus, putamen and fundus striati.[GO]." [GOC:jl, Wikipedia:Striatum] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002435 | |||
|is_a=UBERON:0011300 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of=UBERON:0000204;;UBERON:0000369;;UBERON:0002420 | |name=striatum | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000204;;UBERON:0000369;;UBERON:0002420;;UBERON:0006098 | |||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0006514 | |||
|subset=uberon_slim | |||
|synonym="corpus striatum" RELATED [MA:0000891];;"neostriatum" EXACT [GO:0021756, Wikipedia:Striatum];;"striate nucleus" EXACT [GO:0021756, Wikipedia:Striatum] | |||
|union_of= | |||
|xref=ABA:STR;;BM:N;;BTO:0000418;;EFO:0000109;;EMAPA:17549;;FMA:77618;;FMA:83683;;http://upload.wikimedia.org/wikipedia/commons/3/33/BrainCaudatePutamen.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/BrainCaudatePutamen.svg/200px-BrainCaudatePutamen.svg.png;;MA:0000891;;MESH:A.08.186.211.730.885.105.487.550;;ncithesaurus:Striatum;;NIF_GrossAnatomy:birnlex_1672 | |||
}} | }} | ||
Latest revision as of 17:32, 12 September 2014
| Name: | striatum | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A region of the forebrain consisting of the caudate nucleus, putamen and fundus striati.[GO]." [GOC:jl, Wikipedia:Striatum] | ||
| Xrefs: |
| ||
| Synonyms: |
"corpus striatum" RELATED [MA:0000891] "neostriatum" EXACT [GO:0021756, Wikipedia:Striatum] "striate nucleus" EXACT [GO:0021756, Wikipedia:Striatum] | ||
| Comments: | AO notes: FMA divides striatum of neuraxis into 4, neostriatum is seperate class. In NIF these are synonyms. TODO - check striatum vs corpus striatum see http://en.wikipedia.org/wiki/Striatum#History. Check caudoputamen | ||
| Alt_id: | UBERON:MA_0000891-FMA_77618 | ||
| Subset: | uberon_slim |
200px-BrainCaudatePutamen.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0011300(gray matter of telencephalon) |
|---|---|
| part_of: | UBERON:0000204(ventral part of telencephalon),UBERON:0000369(corpus striatum),UBERON:0002420(basal ganglion),UBERON:0006098(basal nuclear complex) |
Children
| part of: | UBERON:0001873 (caudate nucleus),UBERON:0001874 (putamen),CL:0002613 (striatum neuron),UBERON:0005382 (dorsal striatum),UBERON:0005403 (ventral striatum) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10152-102I8 (putamen, adult, donor10252)
- 10164-103B2 (caudate nucleus, adult, donor10252)
- 10176-103C5 (putamen, adult, donor10196)
- 10177-103C6 (caudate nucleus - adult, donor10196)
- 10354-105E3 (caudate nucleus, newborn, donor10223)
- 10365-105F5 (putamen, newborn, donor10223)
- 10372-105G3 (putamen, adult, donor10258)
- 11646-122D8 (Mouse Neurons - striatal, donor3)
- 11723-123D4 (Mouse Neurons - striatal, donor1)
... further results Mouse (Mus musculus)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10152-102I8 (putamen, adult, donor10252)
- 10164-103B2 (caudate nucleus, adult, donor10252)
- 10176-103C5 (putamen, adult, donor10196)
- 10177-103C6 (caudate nucleus - adult, donor10196)
- 10354-105E3 (caudate nucleus, newborn, donor10223)
- 10365-105F5 (putamen, newborn, donor10223)
- 10372-105G3 (putamen, adult, donor10258)
- 11646-122D8 (Mouse Neurons - striatal, donor3)
- 11723-123D4 (Mouse Neurons - striatal, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002435 (striatum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
